RNA–Protein interactions for RNA: ENST00000489414.5

EXOSC3-206, Transcript of exosome component 3, humanhuman

TSL 4

Gene EXOSC3, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-206ENST00000489414 SAGE1Q9NXZ1 904 aa11.39□□□□□ -0.59
EXOSC3-206ENST00000489414 ZBTB12Q9Y330 459 aaPredicted RBP11.39□□□□□ -0.59
EXOSC3-206ENST00000489414 GYS1P13807 737 aa11.38□□□□□ -0.59
EXOSC3-206ENST00000489414 FMR1Q06787 632 aaKnown RBP eCLIP11.38□□□□□ -0.594e-6■■■■□ 21.6
EXOSC3-206ENST00000489414 CDK19Q9BWU1 502 aa11.38□□□□□ -0.59
EXOSC3-206ENST00000489414 PKN2Q16513 984 aaKnown RBP11.37□□□□□ -0.59
EXOSC3-206ENST00000489414 HHIPL1Q96JK4 782 aa11.37□□□□□ -0.59
EXOSC3-206ENST00000489414 INSRP06213 1382 aa11.37□□□□□ -0.59
EXOSC3-206ENST00000489414 LAMB4A4D0S4 1761 aa11.36□□□□□ -0.59
EXOSC3-206ENST00000489414 SOX12O15370 315 aa11.36□□□□□ -0.59
EXOSC3-206ENST00000489414 EPHX2P34913 555 aa11.36□□□□□ -0.59
EXOSC3-206ENST00000489414 SAPCD2Q86UD0 394 aa11.36□□□□□ -0.59
EXOSC3-206ENST00000489414 PNMA8AQ86V59 439 aaPredicted RBP11.36□□□□□ -0.59
EXOSC3-206ENST00000489414 REM2Q8IYK8 340 aaPredicted RBP11.36□□□□□ -0.59
EXOSC3-206ENST00000489414 FAM122AQ96E09 287 aa11.36□□□□□ -0.59
EXOSC3-206ENST00000489414 SCN11AQ9UI33 1791 aa11.36□□□□□ -0.59
EXOSC3-206ENST00000489414 ZIC5Q96T25 663 aa11.35□□□□□ -0.59
EXOSC3-206ENST00000489414 FOXD4L1Q9NU39 408 aa11.35□□□□□ -0.59
EXOSC3-206ENST00000489414 RAPGEFL1Q9UHV5 662 aa11.35□□□□□ -0.59
EXOSC3-206ENST00000489414 HACL1Q9UJ83 578 aa11.35□□□□□ -0.59
EXOSC3-206ENST00000489414 RBBP6Q7Z6E9 1792 aaKnown RBP11.35□□□□□ -0.59
EXOSC3-206ENST00000489414 AKAP4Q5JQC9 854 aa11.34□□□□□ -0.59
EXOSC3-206ENST00000489414 PIP4P2Q8N4L2 257 aa11.34□□□□□ -0.59
EXOSC3-206ENST00000489414 ERBB4Q15303 1308 aa11.34□□□□□ -0.59
EXOSC3-206ENST00000489414 KIAA0100Q14667 2235 aaKnown RBP11.33□□□□□ -0.59
EXOSC3-206ENST00000489414 NOGQ13253 232 aa11.33□□□□□ -0.6
EXOSC3-206ENST00000489414 TRAPPC3LQ5T215 181 aa11.33□□□□□ -0.6
EXOSC3-206ENST00000489414 TTLL6Q8N841 843 aa11.33□□□□□ -0.6
EXOSC3-206ENST00000489414 ANKRD24Q8TF21 1146 aa11.33□□□□□ -0.6
EXOSC3-206ENST00000489414 SMARCC1Q92922 1105 aaPredicted RBP11.33□□□□□ -0.6
EXOSC3-206ENST00000489414 SLC4A1APQ9BWU0 796 aaKnown RBP11.33□□□□□ -0.6
EXOSC3-206ENST00000489414 RBM27Q9P2N5 1060 aaKnown RBP11.33□□□□□ -0.6
EXOSC3-206ENST00000489414 TTC28Q96AY4 2481 aa11.33□□□□□ -0.6
EXOSC3-206ENST00000489414 ITGB4P16144 1822 aa11.32□□□□□ -0.6
EXOSC3-206ENST00000489414 LTN1O94822 1766 aa11.32□□□□□ -0.6
EXOSC3-206ENST00000489414 PAPPA2Q9BXP8 1791 aa11.32□□□□□ -0.6
EXOSC3-206ENST00000489414 DDR1Q08345 913 aa11.32□□□□□ -0.6
EXOSC3-206ENST00000489414 ZCRB1Q8TBF4 217 aaKnown RBP11.32□□□□□ -0.6
EXOSC3-206ENST00000489414 FAM208AQ9UK61 1670 aaKnown RBP11.32□□□□□ -0.6
EXOSC3-206ENST00000489414 LTBP3Q9NS15 1303 aa11.32□□□□□ -0.6
EXOSC3-206ENST00000489414 AKAP11Q9UKA4 1901 aa11.31□□□□□ -0.6
EXOSC3-206ENST00000489414 LOC102724428A0A0B4J2F2 783 aa11.31□□□□□ -0.6
EXOSC3-206ENST00000489414 POTEFA5A3E0 1075 aa11.31□□□□□ -0.6
EXOSC3-206ENST00000489414 SIK1P57059 783 aa11.31□□□□□ -0.6
EXOSC3-206ENST00000489414 ITPK1Q13572 414 aa11.31□□□□□ -0.6
EXOSC3-206ENST00000489414 ARHGEF1Q92888 912 aaKnown RBP11.31□□□□□ -0.6
EXOSC3-206ENST00000489414 H0YGN5 161 aa11.3□□□□□ -0.6
EXOSC3-206ENST00000489414 MPRIPQ6WCQ1 1025 aa11.3□□□□□ -0.6
EXOSC3-206ENST00000489414 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.3□□□□□ -0.6
EXOSC3-206ENST00000489414 EYSQ5T1H1 3165 aa11.3□□□□□ -0.6
EXOSC3-206ENST00000489414 TRAF5O00463 557 aa11.29□□□□□ -0.6
EXOSC3-206ENST00000489414 RNF186Q9NXI6 227 aa11.29□□□□□ -0.6
EXOSC3-206ENST00000489414 RTCBQ9Y3I0 505 aaKnown RBP11.29□□□□□ -0.6
EXOSC3-206ENST00000489414 TRPA1O75762 1119 aa11.28□□□□□ -0.6
EXOSC3-206ENST00000489414 CABP2Q9NPB3 220 aa11.28□□□□□ -0.6
EXOSC3-206ENST00000489414 STXBP5LQ9Y2K9 1186 aa11.28□□□□□ -0.6
EXOSC3-206ENST00000489414 RNF123Q5XPI4 1314 aa11.28□□□□□ -0.6
EXOSC3-206ENST00000489414 SMG6Q86US8 1419 aaKnown RBP11.27□□□□□ -0.6
EXOSC3-206ENST00000489414 LAMA2P24043 3122 aaKnown RBP11.27□□□□□ -0.6
EXOSC3-206ENST00000489414 FBXO46Q6PJ61 603 aaPredicted RBP11.27□□□□□ -0.61
EXOSC3-206ENST00000489414 TAOK3Q9H2K8 898 aa11.27□□□□□ -0.61
EXOSC3-206ENST00000489414 ZNF541Q9H0D2 1346 aa11.27□□□□□ -0.61
EXOSC3-206ENST00000489414 POLRMTO00411 1230 aaKnown RBP11.26□□□□□ -0.61
EXOSC3-206ENST00000489414 PITPNM1O00562 1244 aa11.26□□□□□ -0.61
EXOSC3-206ENST00000489414 RFC4P35249 363 aa11.26□□□□□ -0.61
EXOSC3-206ENST00000489414 CCDC24Q8N4L8 307 aa11.26□□□□□ -0.61
EXOSC3-206ENST00000489414 USP31Q70CQ4 1352 aa11.26□□□□□ -0.61
EXOSC3-206ENST00000489414 AFDNP55196 1824 aaKnown RBP11.25□□□□□ -0.61
EXOSC3-206ENST00000489414 PIEZO1Q92508 2521 aa11.25□□□□□ -0.61
EXOSC3-206ENST00000489414 SOX1O00570 391 aaPredicted RBP11.25□□□□□ -0.61
EXOSC3-206ENST00000489414 PRO3102Q9H379 93 aa11.25□□□□□ -0.61
EXOSC3-206ENST00000489414 NRXN2Q9P2S2 1712 aa11.25□□□□□ -0.61
EXOSC3-206ENST00000489414 CELF2O95319 508 aaKnown RBP11.24□□□□□ -0.61
EXOSC3-206ENST00000489414 FKBP8Q14318 412 aa11.24□□□□□ -0.61
EXOSC3-206ENST00000489414 C21orf2O43822 256 aa11.23□□□□□ -0.61
EXOSC3-206ENST00000489414 ATP6V1AP38606 617 aa11.23□□□□□ -0.61
EXOSC3-206ENST00000489414 LRCH3Q96II8 777 aa11.23□□□□□ -0.61
EXOSC3-206ENST00000489414 TTC21BQ7Z4L5 1316 aa11.23□□□□□ -0.61
EXOSC3-206ENST00000489414 PRUNE2Q8WUY3 3088 aa11.23□□□□□ -0.61
EXOSC3-206ENST00000489414 COL5A3P25940 1745 aaPredicted RBP11.23□□□□□ -0.61
EXOSC3-206ENST00000489414 FAM155AB1AL88 458 aaPredicted RBP11.22□□□□□ -0.61
EXOSC3-206ENST00000489414 HAX1O00165 279 aa11.22□□□□□ -0.61
EXOSC3-206ENST00000489414 INTS3Q68E01 1043 aaKnown RBP11.22□□□□□ -0.61
EXOSC3-206ENST00000489414 PIGBQ92521 554 aa11.22□□□□□ -0.61
EXOSC3-206ENST00000489414 HDAC9Q9UKV0 1011 aa11.22□□□□□ -0.61
EXOSC3-206ENST00000489414 RGPD2P0DJD1 1756 aa11.21□□□□□ -0.61
EXOSC3-206ENST00000489414 SYNGAP1Q96PV0 1343 aa11.21□□□□□ -0.61
EXOSC3-206ENST00000489414 SYNE4Q8N205 404 aa11.21□□□□□ -0.61
EXOSC3-206ENST00000489414 MYH14Q7Z406 1995 aaKnown RBP11.21□□□□□ -0.62
EXOSC3-206ENST00000489414 EN2P19622 333 aaPredicted RBP11.2□□□□□ -0.62
EXOSC3-206ENST00000489414 TM4SF1P30408 202 aa11.2□□□□□ -0.62
EXOSC3-206ENST00000489414 ANKRD13DQ6ZTN6 518 aa11.2□□□□□ -0.62
EXOSC3-206ENST00000489414 C2CD5Q86YS7 1000 aa11.2□□□□□ -0.62
EXOSC3-206ENST00000489414 CABP1Q9NZU7 370 aa11.2□□□□□ -0.62
EXOSC3-206ENST00000489414 ZNF831Q5JPB2 1677 aa11.2□□□□□ -0.62
EXOSC3-206ENST00000489414 KDRP35968 1356 aa11.19□□□□□ -0.62
EXOSC3-206ENST00000489414 TTC21AQ8NDW8 1320 aa11.19□□□□□ -0.62
EXOSC3-206ENST00000489414 USP42Q9H9J4 1324 aaKnown RBP11.19□□□□□ -0.62
EXOSC3-206ENST00000489414 RPS6KA4O75676 772 aa11.19□□□□□ -0.62
EXOSC3-206ENST00000489414 FXR2P51116 673 aaKnown RBP eCLIP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms