RNA–Protein interactions for RNA: ENST00000489357.5

VTI1A-207, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 3

Gene VTI1A, Length 444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-207ENST00000489357 RIPK4P57078 832 aa10.81□□□□□ -0.68
VTI1A-207ENST00000489357 CAMK2BQ13554 666 aa10.81□□□□□ -0.68
VTI1A-207ENST00000489357 ZKSCAN2Q63HK3 967 aa10.81□□□□□ -0.68
VTI1A-207ENST00000489357 LARP1Q6PKG0 1096 aaKnown RBP10.81□□□□□ -0.68
VTI1A-207ENST00000489357 BARGINQ6ZT62 677 aa10.81□□□□□ -0.68
VTI1A-207ENST00000489357 UPF1Q92900 1129 aaKnown RBP eCLIP10.81□□□□□ -0.688e-7■■■■■ 27.8
VTI1A-207ENST00000489357 CHMP4BQ9H444 224 aaKnown RBP10.81□□□□□ -0.68
VTI1A-207ENST00000489357 THSD7AQ9UPZ6 1657 aa10.81□□□□□ -0.68
VTI1A-207ENST00000489357 WDR17Q8IZU2 1322 aa10.81□□□□□ -0.68
VTI1A-207ENST00000489357 RGPD2P0DJD1 1756 aa10.8□□□□□ -0.68
VTI1A-207ENST00000489357 RTL1A6NKG5 1358 aa10.8□□□□□ -0.68
VTI1A-207ENST00000489357 HOXC9P31274 260 aa10.8□□□□□ -0.68
VTI1A-207ENST00000489357 PRKAR2BP31323 418 aa10.8□□□□□ -0.68
VTI1A-207ENST00000489357 KCNV2Q8TDN2 545 aa10.8□□□□□ -0.68
VTI1A-207ENST00000489357 OTUD5Q96G74 571 aa10.8□□□□□ -0.68
VTI1A-207ENST00000489357 BACH2Q9BYV9 841 aa10.8□□□□□ -0.68
VTI1A-207ENST00000489357 IFT57Q9NWB7 429 aa10.8□□□□□ -0.68
VTI1A-207ENST00000489357 THRAP3Q9Y2W1 955 aaKnown RBP10.8□□□□□ -0.68
VTI1A-207ENST00000489357 CCDC9Q9Y3X0 531 aaKnown RBP10.8□□□□□ -0.68
VTI1A-207ENST00000489357 CRB1P82279 1406 aa10.8□□□□□ -0.68
VTI1A-207ENST00000489357 ERBB3P21860 1342 aa10.8□□□□□ -0.68
VTI1A-207ENST00000489357 GNAI1P63096 354 aa10.79□□□□□ -0.68
VTI1A-207ENST00000489357 RRS1Q15050 365 aaKnown RBP10.79□□□□□ -0.68
VTI1A-207ENST00000489357 ANP32EQ9BTT0 268 aa10.79□□□□□ -0.68
VTI1A-207ENST00000489357 CARD10Q9BWT7 1032 aa10.79□□□□□ -0.68
VTI1A-207ENST00000489357 WNK3Q9BYP7 1800 aa10.79□□□□□ -0.68
VTI1A-207ENST00000489357 FAM208AQ9UK61 1670 aaKnown RBP10.79□□□□□ -0.68
VTI1A-207ENST00000489357 EVA1CP58658 441 aa10.78□□□□□ -0.68
VTI1A-207ENST00000489357 ARHGAP45Q92619 1136 aa10.78□□□□□ -0.68
VTI1A-207ENST00000489357 STRN4Q9NRL3 753 aa10.78□□□□□ -0.68
VTI1A-207ENST00000489357 PARP4Q9UKK3 1724 aaKnown RBP10.78□□□□□ -0.68
VTI1A-207ENST00000489357 FLT4P35916 1363 aa10.77□□□□□ -0.68
VTI1A-207ENST00000489357 DISP2A7MBM2 1401 aa10.77□□□□□ -0.68
VTI1A-207ENST00000489357 NCAPD2Q15021 1401 aa10.77□□□□□ -0.68
VTI1A-207ENST00000489357 MVPQ14764 893 aaKnown RBP10.77□□□□□ -0.69
VTI1A-207ENST00000489357 SEPT12Q8IYM1 358 aa10.77□□□□□ -0.69
VTI1A-207ENST00000489357 DZIP1LQ8IYY4 767 aaKnown RBP10.77□□□□□ -0.69
VTI1A-207ENST00000489357 DDX19BQ9UMR2 479 aa10.77□□□□□ -0.69
VTI1A-207ENST00000489357 EMILIN1Q9Y6C2 1016 aa10.77□□□□□ -0.69
VTI1A-207ENST00000489357 VIRMAQ69YN4 1812 aaKnown RBP10.77□□□□□ -0.69
VTI1A-207ENST00000489357 DLG5Q8TDM6 1919 aa10.76□□□□□ -0.69
VTI1A-207ENST00000489357 PPM1GO15355 546 aaPredicted RBP10.76□□□□□ -0.69
VTI1A-207ENST00000489357 ZNF853P0CG23 659 aa10.76□□□□□ -0.69
VTI1A-207ENST00000489357 AMPHP49418 695 aa10.76□□□□□ -0.69
VTI1A-207ENST00000489357 FAM98CQ17RN3 349 aaKnown RBP10.76□□□□□ -0.69
VTI1A-207ENST00000489357 HSP90AB2PQ58FF8 381 aa10.76□□□□□ -0.69
VTI1A-207ENST00000489357 ANKRD24Q8TF21 1146 aa10.76□□□□□ -0.69
VTI1A-207ENST00000489357 IPO9Q96P70 1041 aaKnown RBP10.76□□□□□ -0.69
VTI1A-207ENST00000489357 RWDD1Q9H446 243 aaPredicted RBP10.76□□□□□ -0.69
VTI1A-207ENST00000489357 KDRP35968 1356 aa10.76□□□□□ -0.69
VTI1A-207ENST00000489357 ZBTB7CA1YPR0 619 aa10.75□□□□□ -0.69
VTI1A-207ENST00000489357 EXOSC9Q06265 439 aaKnown RBP10.75□□□□□ -0.69
VTI1A-207ENST00000489357 ATF7IPQ6VMQ6 1270 aa10.75□□□□□ -0.69
VTI1A-207ENST00000489357 FTSJ3Q8IY81 847 aaKnown RBP10.75□□□□□ -0.69
VTI1A-207ENST00000489357 FRAT1Q92837 279 aaPredicted RBP10.75□□□□□ -0.69
VTI1A-207ENST00000489357 ARHGEF1Q92888 912 aaKnown RBP10.75□□□□□ -0.69
VTI1A-207ENST00000489357 SMC4Q9NTJ3 1288 aa10.75□□□□□ -0.69
VTI1A-207ENST00000489357 A0A0G2JS52 829 aa10.74□□□□□ -0.69
VTI1A-207ENST00000489357 FAM161AQ3B820 660 aa10.74□□□□□ -0.69
VTI1A-207ENST00000489357 TOM1L2Q6ZVM7 507 aa10.74□□□□□ -0.69
VTI1A-207ENST00000489357 ERICH6Q7L0X2 663 aa10.74□□□□□ -0.69
VTI1A-207ENST00000489357 DDRGK1Q96HY6 314 aa10.74□□□□□ -0.69
VTI1A-207ENST00000489357 EMILIN3Q9NT22 766 aa10.74□□□□□ -0.69
VTI1A-207ENST00000489357 COG6Q9Y2V7 657 aa10.74□□□□□ -0.69
VTI1A-207ENST00000489357 HDAC1Q13547 482 aaPredicted RBP10.73□□□□□ -0.69
VTI1A-207ENST00000489357 EIF4A2Q14240 407 aaKnown RBP10.73□□□□□ -0.69
VTI1A-207ENST00000489357 NBPF6Q5VWK0 638 aa10.73□□□□□ -0.69
VTI1A-207ENST00000489357 PANK1Q8TE04 598 aa10.73□□□□□ -0.69
VTI1A-207ENST00000489357 SSH1Q8WYL5 1049 aa10.73□□□□□ -0.69
VTI1A-207ENST00000489357 TSR2Q969E8 191 aaKnown RBP10.73□□□□□ -0.69
VTI1A-207ENST00000489357 NBPF4Q96M43 638 aa10.73□□□□□ -0.69
VTI1A-207ENST00000489357 CDCA7Q9BWT1 371 aaPredicted RBP10.73□□□□□ -0.69
VTI1A-207ENST00000489357 ARIH1Q9Y4X5 557 aaPredicted RBP10.73□□□□□ -0.69
VTI1A-207ENST00000489357 SOS1Q07889 1333 aaPredicted RBP10.73□□□□□ -0.69
VTI1A-207ENST00000489357 HTATSF1O43719 755 aaKnown RBP10.72□□□□□ -0.69
VTI1A-207ENST00000489357 TRIM27P14373 513 aa10.72□□□□□ -0.69
VTI1A-207ENST00000489357 KRT27Q7Z3Y8 459 aa10.72□□□□□ -0.69
VTI1A-207ENST00000489357 PHACTR3Q96KR7 559 aa10.72□□□□□ -0.69
VTI1A-207ENST00000489357 USP35Q9P2H5 1018 aa10.72□□□□□ -0.69
VTI1A-207ENST00000489357 NOP58Q9Y2X3 529 aaKnown RBP10.72□□□□□ -0.69
VTI1A-207ENST00000489357 SBF2Q86WG5 1849 aa10.72□□□□□ -0.69
VTI1A-207ENST00000489357 BCL9O00512 1426 aa10.71□□□□□ -0.69
VTI1A-207ENST00000489357 LRRC37A3O60309 1634 aa10.71□□□□□ -0.69
VTI1A-207ENST00000489357 SLC34A2O95436 690 aa10.71□□□□□ -0.69
VTI1A-207ENST00000489357 HMOX1P09601 288 aa10.71□□□□□ -0.69
VTI1A-207ENST00000489357 IGSF1Q8N6C5 1336 aa10.71□□□□□ -0.69
VTI1A-207ENST00000489357 NLRP2Q9NX02 1062 aa10.71□□□□□ -0.69
VTI1A-207ENST00000489357 SHANK3Q9BYB0 1731 aa10.7□□□□□ -0.7
VTI1A-207ENST00000489357 EP400Q96L91 3159 aa10.7□□□□□ -0.7
VTI1A-207ENST00000489357 CSB-PGBD3P0DP91 1061 aa10.7□□□□□ -0.7
VTI1A-207ENST00000489357 RLBP1P12271 317 aa10.7□□□□□ -0.7
VTI1A-207ENST00000489357 DOK7Q18PE1 504 aa10.7□□□□□ -0.7
VTI1A-207ENST00000489357 CCDC125Q86Z20 511 aa10.7□□□□□ -0.7
VTI1A-207ENST00000489357 EYA1Q99502 592 aa10.7□□□□□ -0.7
VTI1A-207ENST00000489357 BABAM1Q9NWV8 329 aa10.7□□□□□ -0.7
VTI1A-207ENST00000489357 PLEKHG2Q9H7P9 1386 aa10.69□□□□□ -0.7
VTI1A-207ENST00000489357 SNPHO15079 494 aa10.69□□□□□ -0.7
VTI1A-207ENST00000489357 VAMP4O75379 141 aa10.69□□□□□ -0.7
VTI1A-207ENST00000489357 IGHDP01880 384 aa10.69□□□□□ -0.7
VTI1A-207ENST00000489357 IL2RBP14784 551 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 111.2 ms