RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 ZNF316A6NFI3 1004 aaPredicted RBP28.02■■■□□ 2.08
LIME1-207ENST00000489212 STARD3NLO95772 234 aa28.01■■■□□ 2.07
LIME1-207ENST00000489212 THUMPD2Q9BTF0 503 aaKnown RBP28.01■■■□□ 2.07
LIME1-207ENST00000489212 COL15A1P39059 1388 aa28■■■□□ 2.07
LIME1-207ENST00000489212 CANXP27824 592 aaKnown RBP28■■■□□ 2.07
LIME1-207ENST00000489212 FKBP8Q14318 412 aa28■■■□□ 2.07
LIME1-207ENST00000489212 TAF7Q15545 349 aaPredicted RBP28■■■□□ 2.07
LIME1-207ENST00000489212 TEX13AQ9BXU3 409 aaPredicted RBP27.99■■■□□ 2.07
LIME1-207ENST00000489212 MIS18AQ9NYP9 233 aa27.99■■■□□ 2.07
LIME1-207ENST00000489212 PRAMEF22A3QJZ6 481 aa27.98■■■□□ 2.07
LIME1-207ENST00000489212 GPR162Q16538 588 aa27.97■■■□□ 2.07
LIME1-207ENST00000489212 USPL1Q5W0Q7 1092 aa27.97■■■□□ 2.07
LIME1-207ENST00000489212 CCDC146Q8IYE0 955 aa27.97■■■□□ 2.07
LIME1-207ENST00000489212 EIF5P55010 431 aaKnown RBP27.96■■■□□ 2.07
LIME1-207ENST00000489212 ADAMTS8Q9UP79 889 aa27.96■■■□□ 2.07
LIME1-207ENST00000489212 USP16Q9Y5T5 823 aa27.96■■■□□ 2.07
LIME1-207ENST00000489212 ZPR1O75312 459 aa27.95■■■□□ 2.06
LIME1-207ENST00000489212 A1BGP04217 495 aa27.95■■■□□ 2.06
LIME1-207ENST00000489212 RIPK4P57078 832 aa27.95■■■□□ 2.06
LIME1-207ENST00000489212 WDR43Q15061 677 aaKnown RBP eCLIP27.95■■■□□ 2.06
LIME1-207ENST00000489212 PELP1Q8IZL8 1130 aaKnown RBP27.95■■■□□ 2.06
LIME1-207ENST00000489212 NARFQ9UHQ1 456 aa27.95■■■□□ 2.06
LIME1-207ENST00000489212 KDM3BQ7LBC6 1761 aa27.94■■■□□ 2.06
LIME1-207ENST00000489212 TMPOP42166 694 aaKnown RBP27.94■■■□□ 2.06
LIME1-207ENST00000489212 DDR1Q08345 913 aa27.94■■■□□ 2.06
LIME1-207ENST00000489212 KIF13BQ9NQT8 1826 aa27.94■■■□□ 2.06
LIME1-207ENST00000489212 YBX3P16989 372 aaKnown RBP eCLIP27.93■■■□□ 2.06
LIME1-207ENST00000489212 BCL2L12Q9HB09 334 aa27.93■■■□□ 2.06
LIME1-207ENST00000489212 PARP3Q9Y6F1 533 aa27.93■■■□□ 2.06
LIME1-207ENST00000489212 SNRPA1P09661 255 aaKnown RBP27.92■■■□□ 2.06
LIME1-207ENST00000489212 YY1P25490 414 aa27.92■■■□□ 2.06
LIME1-207ENST00000489212 RRP7AQ9Y3A4 280 aaKnown RBP27.92■■■□□ 2.06
LIME1-207ENST00000489212 C10orf71Q711Q0 1435 aa27.92■■■□□ 2.06
LIME1-207ENST00000489212 TM4SF1P30408 202 aa27.91■■■□□ 2.06
LIME1-207ENST00000489212 RUNDC1Q96C34 613 aa27.91■■■□□ 2.06
LIME1-207ENST00000489212 IL6STP40189 918 aaPredicted RBP27.9■■■□□ 2.06
LIME1-207ENST00000489212 PNISRQ8TF01 805 aaKnown RBP27.9■■■□□ 2.06
LIME1-207ENST00000489212 KIAA1551Q9HCM1 1747 aa27.89■■■□□ 2.06
LIME1-207ENST00000489212 PIP4K2AP48426 406 aaPredicted RBP27.89■■■□□ 2.06
LIME1-207ENST00000489212 A0A087WZG4 1122 aa27.88■■■□□ 2.05
LIME1-207ENST00000489212 POLRMTO00411 1230 aaKnown RBP27.88■■■□□ 2.05
LIME1-207ENST00000489212 ZNF330Q9Y3S2 320 aaPredicted RBP27.88■■■□□ 2.05
LIME1-207ENST00000489212 CHD4Q14839 1912 aa27.87■■■□□ 2.05
LIME1-207ENST00000489212 NFIXQ14938 502 aa27.87■■■□□ 2.05
LIME1-207ENST00000489212 NEUROD2Q15784 382 aa27.87■■■□□ 2.05
LIME1-207ENST00000489212 CCDC184Q52MB2 194 aa27.87■■■□□ 2.05
LIME1-207ENST00000489212 PXDNLA1KZ92 1463 aa27.87■■■□□ 2.05
LIME1-207ENST00000489212 EIF4A1P60842 406 aaKnown RBP27.86■■■□□ 2.05
LIME1-207ENST00000489212 WWC3Q9ULE0 1092 aa27.86■■■□□ 2.05
LIME1-207ENST00000489212 TBC1D2BQ9UPU7 963 aa27.86■■■□□ 2.05
LIME1-207ENST00000489212 N4BP2Q86UW6 1770 aaPredicted RBP27.86■■■□□ 2.05
LIME1-207ENST00000489212 SCN7AQ01118 1682 aa27.85■■■□□ 2.05
LIME1-207ENST00000489212 NBPF26B4DH59 902 aa27.84■■■□□ 2.05
LIME1-207ENST00000489212 LMOD3Q0VAK6 560 aa27.84■■■□□ 2.05
LIME1-207ENST00000489212 NBPF10Q6P3W6 841 aaKnown RBP27.84■■■□□ 2.05
LIME1-207ENST00000489212 NBPF15Q8N660 670 aa27.84■■■□□ 2.05
LIME1-207ENST00000489212 TRIM35Q9UPQ4 493 aa27.84■■■□□ 2.05
LIME1-207ENST00000489212 LAMB4A4D0S4 1761 aa27.83■■■□□ 2.05
LIME1-207ENST00000489212 GIGYF1O75420 1035 aaPredicted RBP27.83■■■□□ 2.05
LIME1-207ENST00000489212 TGFB2P61812 414 aa27.83■■■□□ 2.05
LIME1-207ENST00000489212 AFDNP55196 1824 aaKnown RBP27.83■■■□□ 2.05
LIME1-207ENST00000489212 A0A0G2JLW4 131 aa27.82■■■□□ 2.04
LIME1-207ENST00000489212 TSPYL4Q9UJ04 414 aa27.82■■■□□ 2.04
LIME1-207ENST00000489212 GRIN3BO60391 1043 aa27.81■■■□□ 2.04
LIME1-207ENST00000489212 CAMTA2O94983 1202 aa27.81■■■□□ 2.04
LIME1-207ENST00000489212 NRXN2Q9P2S2 1712 aa27.81■■■□□ 2.04
LIME1-207ENST00000489212 DPEP1P16444 411 aa27.8■■■□□ 2.04
LIME1-207ENST00000489212 BCORQ6W2J9 1755 aa27.79■■■□□ 2.04
LIME1-207ENST00000489212 TBC1D9BQ66K14 1250 aa27.79■■■□□ 2.04
LIME1-207ENST00000489212 BICDL1Q6ZP65 573 aa27.79■■■□□ 2.04
LIME1-207ENST00000489212 DZIP3Q86Y13 1208 aaKnown RBP27.79■■■□□ 2.04
LIME1-207ENST00000489212 NPM2Q86SE8 214 aaKnown RBP27.78■■■□□ 2.04
LIME1-207ENST00000489212 SERPINB2P05120 415 aa27.77■■■□□ 2.04
LIME1-207ENST00000489212 KCNA3P22001 575 aa27.77■■■□□ 2.04
LIME1-207ENST00000489212 BABAM1Q9NWV8 329 aa27.77■■■□□ 2.04
LIME1-207ENST00000489212 BRCA1P38398 1863 aaKnown RBP27.76■■■□□ 2.04
LIME1-207ENST00000489212 APAF1O14727 1248 aa27.75■■■□□ 2.03
LIME1-207ENST00000489212 ANP32CO43423 234 aa27.75■■■□□ 2.03
LIME1-207ENST00000489212 CHL1O00533 1208 aa27.73■■■□□ 2.03
LIME1-207ENST00000489212 CARMIL3Q8ND23 1372 aa27.73■■■□□ 2.03
LIME1-207ENST00000489212 CHRNA5P30532 468 aa27.72■■■□□ 2.03
LIME1-207ENST00000489212 BCS1LQ9Y276 419 aa27.71■■■□□ 2.03
LIME1-207ENST00000489212 LAS1LQ9Y4W2 734 aaKnown RBP27.7■■■□□ 2.02
LIME1-207ENST00000489212 CLEC4GQ6UXB4 293 aa27.69■■■□□ 2.02
LIME1-207ENST00000489212 NGEFQ8N5V2 710 aa27.69■■■□□ 2.02
LIME1-207ENST00000489212 ZNF784Q8NCA9 323 aaPredicted RBP27.69■■■□□ 2.02
LIME1-207ENST00000489212 MRS2Q9HD23 443 aa27.69■■■□□ 2.02
LIME1-207ENST00000489212 KRT24Q2M2I5 525 aa27.68■■■□□ 2.02
LIME1-207ENST00000489212 SETDB2Q96T68 719 aa27.68■■■□□ 2.02
LIME1-207ENST00000489212 MYL6BP14649 208 aa27.67■■■□□ 2.02
LIME1-207ENST00000489212 HLFQ16534 295 aa27.67■■■□□ 2.02
LIME1-207ENST00000489212 PRR5LQ6MZQ0 368 aa27.67■■■□□ 2.02
LIME1-207ENST00000489212 CCDC24Q8N4L8 307 aa27.67■■■□□ 2.02
LIME1-207ENST00000489212 PIM2Q9P1W9 311 aa27.67■■■□□ 2.02
LIME1-207ENST00000489212 ANKRD31Q8N7Z5 1873 aa27.67■■■□□ 2.02
LIME1-207ENST00000489212 EIF2S2P20042 333 aaKnown RBP27.66■■■□□ 2.02
LIME1-207ENST00000489212 ERBB4Q15303 1308 aa27.66■■■□□ 2.02
LIME1-207ENST00000489212 PDIA6Q15084 440 aa27.65■■■□□ 2.02
LIME1-207ENST00000489212 TTLL7Q6ZT98 887 aa27.65■■■□□ 2.02
LIME1-207ENST00000489212 CFAP44Q96MT7 982 aa27.65■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms