RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 ZPR1O75312 459 aa30.66■■■□□ 2.5
COL9A3-213ENST00000489045 USPL1Q5W0Q7 1092 aa30.66■■■□□ 2.5
COL9A3-213ENST00000489045 STARD3NLO95772 234 aa30.65■■■□□ 2.5
COL9A3-213ENST00000489045 DDR1Q08345 913 aa30.65■■■□□ 2.5
COL9A3-213ENST00000489045 BTBD11A6QL63 1104 aa30.64■■■□□ 2.5
COL9A3-213ENST00000489045 TGFB2P61812 414 aa30.64■■■□□ 2.5
COL9A3-213ENST00000489045 MCM10Q7L590 875 aa30.64■■■□□ 2.5
COL9A3-213ENST00000489045 RTF1Q92541 710 aaKnown RBP30.64■■■□□ 2.5
COL9A3-213ENST00000489045 CANXP27824 592 aaKnown RBP30.63■■■□□ 2.49
COL9A3-213ENST00000489045 FMNL2Q96PY5 1086 aa30.63■■■□□ 2.49
COL9A3-213ENST00000489045 AFDNP55196 1824 aaKnown RBP30.63■■■□□ 2.49
COL9A3-213ENST00000489045 NARFQ9UHQ1 456 aa30.62■■■□□ 2.49
COL9A3-213ENST00000489045 A0A0G2JLW4 131 aa30.61■■■□□ 2.49
COL9A3-213ENST00000489045 KCNQ3O43525 872 aa30.61■■■□□ 2.49
COL9A3-213ENST00000489045 TEX13AQ9BXU3 409 aaPredicted RBP30.61■■■□□ 2.49
COL9A3-213ENST00000489045 TM4SF1P30408 202 aa30.6■■■□□ 2.49
COL9A3-213ENST00000489045 SCN7AQ01118 1682 aa30.6■■■□□ 2.49
COL9A3-213ENST00000489045 DCTN1Q14203 1278 aa30.6■■■□□ 2.49
COL9A3-213ENST00000489045 POLRMTO00411 1230 aaKnown RBP30.59■■■□□ 2.49
COL9A3-213ENST00000489045 HTATSF1O43719 755 aaKnown RBP30.58■■■□□ 2.49
COL9A3-213ENST00000489045 DPEP1P16444 411 aa30.58■■■□□ 2.49
COL9A3-213ENST00000489045 DDX10Q13206 875 aaKnown RBP30.58■■■□□ 2.49
COL9A3-213ENST00000489045 NRXN2Q9P2S2 1712 aa30.58■■■□□ 2.49
COL9A3-213ENST00000489045 NEFMP07197 916 aa30.57■■■□□ 2.48
COL9A3-213ENST00000489045 EIF5P55010 431 aaKnown RBP30.57■■■□□ 2.48
COL9A3-213ENST00000489045 RALBP1Q15311 655 aa30.56■■■□□ 2.48
COL9A3-213ENST00000489045 BCL2L12Q9HB09 334 aa30.56■■■□□ 2.48
COL9A3-213ENST00000489045 ARFGEF1Q9Y6D6 1849 aa30.55■■■□□ 2.48
COL9A3-213ENST00000489045 NFIXQ14938 502 aa30.55■■■□□ 2.48
COL9A3-213ENST00000489045 PLEKHF1Q96S99 279 aa30.55■■■□□ 2.48
COL9A3-213ENST00000489045 BCS1LQ9Y276 419 aa30.55■■■□□ 2.48
COL9A3-213ENST00000489045 A0A087WZG4 1122 aa30.54■■■□□ 2.48
COL9A3-213ENST00000489045 ZNF330Q9Y3S2 320 aaPredicted RBP30.53■■■□□ 2.48
COL9A3-213ENST00000489045 BCORQ6W2J9 1755 aa30.52■■■□□ 2.48
COL9A3-213ENST00000489045 KDM3BQ7LBC6 1761 aa30.52■■■□□ 2.48
COL9A3-213ENST00000489045 A1BGP04217 495 aa30.52■■■□□ 2.48
COL9A3-213ENST00000489045 KCNA3P22001 575 aa30.52■■■□□ 2.48
COL9A3-213ENST00000489045 ATP10DQ9P241 1426 aa30.52■■■□□ 2.48
COL9A3-213ENST00000489045 ADCY9O60503 1353 aa30.52■■■□□ 2.48
COL9A3-213ENST00000489045 IL6STP40189 918 aaPredicted RBP30.51■■■□□ 2.47
COL9A3-213ENST00000489045 LAMB4A4D0S4 1761 aa30.5■■■□□ 2.47
COL9A3-213ENST00000489045 PRAMEF22A3QJZ6 481 aa30.49■■■□□ 2.47
COL9A3-213ENST00000489045 USP16Q9Y5T5 823 aa30.49■■■□□ 2.47
COL9A3-213ENST00000489045 MAPK8IP3Q9UPT6 1336 aa30.48■■■□□ 2.47
COL9A3-213ENST00000489045 TAF7Q15545 349 aaPredicted RBP30.48■■■□□ 2.47
COL9A3-213ENST00000489045 NFE2L2Q16236 605 aa30.48■■■□□ 2.47
COL9A3-213ENST00000489045 PNNQ9H307 717 aaKnown RBP30.48■■■□□ 2.47
COL9A3-213ENST00000489045 TBC1D2BQ9UPU7 963 aa30.48■■■□□ 2.47
COL9A3-213ENST00000489045 DLEC1Q9Y238 1755 aa30.48■■■□□ 2.47
COL9A3-213ENST00000489045 SNRPA1P09661 255 aaKnown RBP30.47■■■□□ 2.47
COL9A3-213ENST00000489045 CHRNA5P30532 468 aa30.47■■■□□ 2.47
COL9A3-213ENST00000489045 SERPINB2P05120 415 aa30.46■■■□□ 2.47
COL9A3-213ENST00000489045 BICDL1Q6ZP65 573 aa30.46■■■□□ 2.47
COL9A3-213ENST00000489045 PIM2Q9P1W9 311 aa30.46■■■□□ 2.47
COL9A3-213ENST00000489045 MYBBP1AQ9BQG0 1328 aaKnown RBP30.46■■■□□ 2.47
COL9A3-213ENST00000489045 PIP4K2AP48426 406 aaPredicted RBP30.45■■■□□ 2.47
COL9A3-213ENST00000489045 NPM2Q86SE8 214 aaKnown RBP30.45■■■□□ 2.47
COL9A3-213ENST00000489045 MIS18AQ9NYP9 233 aa30.45■■■□□ 2.47
COL9A3-213ENST00000489045 GIGYF1O75420 1035 aaPredicted RBP30.44■■■□□ 2.46
COL9A3-213ENST00000489045 TBC1D9BQ66K14 1250 aa30.43■■■□□ 2.46
COL9A3-213ENST00000489045 ANKRD31Q8N7Z5 1873 aa30.43■■■□□ 2.46
COL9A3-213ENST00000489045 CARMIL3Q8ND23 1372 aa30.42■■■□□ 2.46
COL9A3-213ENST00000489045 ARHGAP27Q6ZUM4 889 aa30.42■■■□□ 2.46
COL9A3-213ENST00000489045 THUMPD2Q9BTF0 503 aaKnown RBP30.42■■■□□ 2.46
COL9A3-213ENST00000489045 CAMTA2O94983 1202 aa30.41■■■□□ 2.46
COL9A3-213ENST00000489045 DALRD3Q5D0E6 543 aaKnown RBP30.41■■■□□ 2.46
COL9A3-213ENST00000489045 C1QTNF8P60827 252 aa30.4■■■□□ 2.46
COL9A3-213ENST00000489045 DZIP3Q86Y13 1208 aaKnown RBP30.4■■■□□ 2.46
COL9A3-213ENST00000489045 PNISRQ8TF01 805 aaKnown RBP30.4■■■□□ 2.46
COL9A3-213ENST00000489045 ZNF526Q8TF50 670 aaPredicted RBP30.38■■■□□ 2.45
COL9A3-213ENST00000489045 GPBP1L1Q9HC44 474 aaPredicted RBP30.37■■■□□ 2.45
COL9A3-213ENST00000489045 NBPF26B4DH59 902 aa30.36■■■□□ 2.45
COL9A3-213ENST00000489045 NBPF10Q6P3W6 841 aaKnown RBP30.36■■■□□ 2.45
COL9A3-213ENST00000489045 NBPF15Q8N660 670 aa30.36■■■□□ 2.45
COL9A3-213ENST00000489045 COL11A2P13942 1736 aaPredicted RBP30.36■■■□□ 2.45
COL9A3-213ENST00000489045 SBF1O95248 1867 aa30.33■■■□□ 2.45
COL9A3-213ENST00000489045 RIPK4P57078 832 aa30.33■■■□□ 2.45
COL9A3-213ENST00000489045 PRR5LQ6MZQ0 368 aa30.33■■■□□ 2.45
COL9A3-213ENST00000489045 C2CD5Q86YS7 1000 aa30.33■■■□□ 2.45
COL9A3-213ENST00000489045 SETDB2Q96T68 719 aa30.33■■■□□ 2.45
COL9A3-213ENST00000489045 EIF4A1P60842 406 aaKnown RBP30.32■■■□□ 2.44
COL9A3-213ENST00000489045 CCDC24Q8N4L8 307 aa30.31■■■□□ 2.44
COL9A3-213ENST00000489045 H0YIN7 160 aa30.3■■■□□ 2.44
COL9A3-213ENST00000489045 TMPOP42166 694 aaKnown RBP30.3■■■□□ 2.44
COL9A3-213ENST00000489045 CCDC146Q8IYE0 955 aa30.29■■■□□ 2.44
COL9A3-213ENST00000489045 CNBD1Q8NA66 436 aa30.29■■■□□ 2.44
COL9A3-213ENST00000489045 BRIP1Q9BX63 1249 aa30.29■■■□□ 2.44
COL9A3-213ENST00000489045 PRKRIP1Q9H875 184 aaPredicted RBP30.29■■■□□ 2.44
COL9A3-213ENST00000489045 ZNF652Q9Y2D9 606 aa30.29■■■□□ 2.44
COL9A3-213ENST00000489045 CACNA1SQ13698 1873 aa30.29■■■□□ 2.44
COL9A3-213ENST00000489045 WDR43Q15061 677 aaKnown RBP eCLIP30.28■■■□□ 2.441e-6■□□□□ 9.5
COL9A3-213ENST00000489045 CLEC4GQ6UXB4 293 aa30.28■■■□□ 2.44
COL9A3-213ENST00000489045 C9orf131Q5VYM1 1079 aa30.27■■■□□ 2.44
COL9A3-213ENST00000489045 TTLL6Q8N841 843 aa30.27■■■□□ 2.44
COL9A3-213ENST00000489045 TSPYL4Q9UJ04 414 aa30.27■■■□□ 2.44
COL9A3-213ENST00000489045 NPHP1O15259 732 aa30.26■■■□□ 2.43
COL9A3-213ENST00000489045 PDE6BP35913 854 aa30.26■■■□□ 2.43
COL9A3-213ENST00000489045 LMOD3Q0VAK6 560 aa30.26■■■□□ 2.43
COL9A3-213ENST00000489045 RRP7AQ9Y3A4 280 aaKnown RBP30.26■■■□□ 2.43
COL9A3-213ENST00000489045 NUP98P52948 1817 aa30.26■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 220.5 ms