RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 ABHD17AQ96GS6 310 aa8.85□□□□□ -0.99
SMC4-220ENST00000488017 FIGNL1Q6PIW4 674 aa8.84□□□□□ -0.99
SMC4-220ENST00000488017 TPSG1Q9NRR2 321 aa8.84□□□□□ -0.99
SMC4-220ENST00000488017 BNIP3LO60238 219 aa8.83□□□□□ -1
SMC4-220ENST00000488017 USP4Q13107 963 aa8.83□□□□□ -1
SMC4-220ENST00000488017 IL27Q8NEV9 243 aa8.83□□□□□ -1
SMC4-220ENST00000488017 TRIM11Q96F44 468 aa8.83□□□□□ -1
SMC4-220ENST00000488017 NEURL1BA8MQ27 555 aa8.82□□□□□ -1
SMC4-220ENST00000488017 C1orf216Q8TAB5 229 aa8.82□□□□□ -1
SMC4-220ENST00000488017 PLVAPQ9BX97 442 aa8.82□□□□□ -1
SMC4-220ENST00000488017 PRSS36Q5K4E3 855 aa8.81□□□□□ -1
SMC4-220ENST00000488017 ETNK1Q9HBU6 452 aa8.81□□□□□ -1
SMC4-220ENST00000488017 LRP8Q14114 963 aa8.8□□□□□ -1
SMC4-220ENST00000488017 TLR1Q15399 786 aa8.8□□□□□ -1
SMC4-220ENST00000488017 TBC1D9Q6ZT07 1266 aa8.8□□□□□ -1
SMC4-220ENST00000488017 NLRP8Q86W28 1048 aa8.8□□□□□ -1
SMC4-220ENST00000488017 PHTF2Q8N3S3 785 aa8.8□□□□□ -1
SMC4-220ENST00000488017 SIRT1Q96EB6 747 aa8.8□□□□□ -1
SMC4-220ENST00000488017 DOLKQ9UPQ8 538 aa8.8□□□□□ -1
SMC4-220ENST00000488017 PCDHGC4Q9Y5F7 938 aa8.8□□□□□ -1
SMC4-220ENST00000488017 NEUROD2Q15784 382 aa8.79□□□□□ -1
SMC4-220ENST00000488017 DNAAF2Q9NVR5 837 aaKnown RBP8.79□□□□□ -1
SMC4-220ENST00000488017 EIF4G2P78344 907 aaKnown RBP eCLIP8.78□□□□□ -1
SMC4-220ENST00000488017 BCANQ96GW7 911 aa8.78□□□□□ -1
SMC4-220ENST00000488017 ZCCHC2Q9C0B9 1178 aaKnown RBP8.78□□□□□ -1
SMC4-220ENST00000488017 AVENQ9NQS1 362 aaPredicted RBP8.78□□□□□ -1
SMC4-220ENST00000488017 SNRKQ9NRH2 765 aa8.78□□□□□ -1
SMC4-220ENST00000488017 ADH6P28332 368 aa8.77□□□□□ -1.01
SMC4-220ENST00000488017 PLA2G4AP47712 749 aa8.77□□□□□ -1.01
SMC4-220ENST00000488017 FAM182BQ5T319 152 aa8.77□□□□□ -1.01
SMC4-220ENST00000488017 CHIC2Q9UKJ5 165 aa8.77□□□□□ -1.01
SMC4-220ENST00000488017 TSGA10IPQ3SY00 556 aa8.76□□□□□ -1.01
SMC4-220ENST00000488017 SLFNL1Q499Z3 407 aa8.76□□□□□ -1.01
SMC4-220ENST00000488017 KLF15Q9UIH9 416 aa8.76□□□□□ -1.01
SMC4-220ENST00000488017 ATXN7O15265 892 aaPredicted RBP8.75□□□□□ -1.01
SMC4-220ENST00000488017 INHAP05111 366 aa8.75□□□□□ -1.01
SMC4-220ENST00000488017 ATP4AP20648 1035 aa8.75□□□□□ -1.01
SMC4-220ENST00000488017 NIFKQ9BYG3 293 aaKnown RBP8.75□□□□□ -1.01
SMC4-220ENST00000488017 KRTAP4-7Q9BYR0 210 aa8.75□□□□□ -1.01
SMC4-220ENST00000488017 PRM3Q9NNZ6 103 aa8.75□□□□□ -1.01
SMC4-220ENST00000488017 SPDYE3A6NKU9 549 aa8.74□□□□□ -1.01
SMC4-220ENST00000488017 HYAL3O43820 417 aaPredicted RBP8.74□□□□□ -1.01
SMC4-220ENST00000488017 FCHSD1Q86WN1 690 aa8.74□□□□□ -1.01
SMC4-220ENST00000488017 STAU1O95793 577 aaKnown RBP8.73□□□□□ -1.01
SMC4-220ENST00000488017 APBA3O96018 575 aa8.73□□□□□ -1.01
SMC4-220ENST00000488017 SCNN1DP51172 638 aa8.73□□□□□ -1.01
SMC4-220ENST00000488017 TNP2Q05952 138 aa8.73□□□□□ -1.01
SMC4-220ENST00000488017 OXLD1Q5BKU9 147 aa8.73□□□□□ -1.01
SMC4-220ENST00000488017 PRRT3Q5FWE3 981 aa8.73□□□□□ -1.01
SMC4-220ENST00000488017 MAPTP10636 758 aaKnown RBP8.72□□□□□ -1.01
SMC4-220ENST00000488017 SMTNP53814 917 aa8.72□□□□□ -1.01
SMC4-220ENST00000488017 GDF10P55107 478 aa8.72□□□□□ -1.01
SMC4-220ENST00000488017 A0A1W2PNR3 127 aa8.71□□□□□ -1.02
SMC4-220ENST00000488017 NBPF1Q3BBV0 1214 aa8.71□□□□□ -1.02
SMC4-220ENST00000488017 AIDAQ96BJ3 306 aa8.71□□□□□ -1.02
SMC4-220ENST00000488017 H2AFB1P0C5Y9 115 aa8.7□□□□□ -1.02
SMC4-220ENST00000488017 H2AFB2P0C5Z0 115 aa8.7□□□□□ -1.02
SMC4-220ENST00000488017 MAP7D1Q3KQU3 841 aa8.7□□□□□ -1.02
SMC4-220ENST00000488017 LCE1DQ5T752 114 aa8.7□□□□□ -1.02
SMC4-220ENST00000488017 ZDHHC3Q9NYG2 299 aa8.7□□□□□ -1.02
SMC4-220ENST00000488017 TBC1D2BQ9UPU7 963 aa8.7□□□□□ -1.02
SMC4-220ENST00000488017 DCDC2BA2VCK2 349 aa8.69□□□□□ -1.02
SMC4-220ENST00000488017 FAM157BP0CG42 384 aa8.69□□□□□ -1.02
SMC4-220ENST00000488017 TATP17735 454 aaPredicted RBP8.69□□□□□ -1.02
SMC4-220ENST00000488017 ARSJQ5FYB0 599 aaPredicted RBP8.69□□□□□ -1.02
SMC4-220ENST00000488017 SLC4A9Q96Q91 983 aa8.69□□□□□ -1.02
SMC4-220ENST00000488017 CDK2AP1O14519 115 aa8.68□□□□□ -1.02
SMC4-220ENST00000488017 KHNYNO15037 678 aaKnown RBP8.68□□□□□ -1.02
SMC4-220ENST00000488017 CD33P20138 364 aa8.68□□□□□ -1.02
SMC4-220ENST00000488017 IRF5Q13568 498 aa8.68□□□□□ -1.02
SMC4-220ENST00000488017 LAMC2Q13753 1193 aa8.68□□□□□ -1.02
SMC4-220ENST00000488017 SAMD5Q5TGI4 173 aa8.68□□□□□ -1.02
SMC4-220ENST00000488017 ZNF468Q5VIY5 522 aaPredicted RBP8.68□□□□□ -1.02
SMC4-220ENST00000488017 ZNF295-AS1Q8N0V1 137 aa8.68□□□□□ -1.02
SMC4-220ENST00000488017 NACC1Q96RE7 527 aa8.68□□□□□ -1.02
SMC4-220ENST00000488017 HCN2Q9UL51 889 aa8.68□□□□□ -1.02
SMC4-220ENST00000488017 MTFR1Q15390 333 aa8.67□□□□□ -1.02
SMC4-220ENST00000488017 MCTP1Q6DN14 999 aa8.67□□□□□ -1.02
SMC4-220ENST00000488017 ZIC5Q96T25 663 aa8.67□□□□□ -1.02
SMC4-220ENST00000488017 BRPF1P55201 1214 aaPredicted RBP8.66□□□□□ -1.02
SMC4-220ENST00000488017 PRR12Q9ULL5 1215 aa8.66□□□□□ -1.02
SMC4-220ENST00000488017 IQSEC3Q9UPP2 1182 aaPredicted RBP8.66□□□□□ -1.02
SMC4-220ENST00000488017 GJA3Q9Y6H8 435 aa8.66□□□□□ -1.02
SMC4-220ENST00000488017 A6NJY4 79 aa8.65□□□□□ -1.02
SMC4-220ENST00000488017 PLPP7Q8NBV4 271 aa8.65□□□□□ -1.02
SMC4-220ENST00000488017 MARK1Q9P0L2 795 aa8.65□□□□□ -1.02
SMC4-220ENST00000488017 TMEM229AB2RXF0 380 aa8.64□□□□□ -1.03
SMC4-220ENST00000488017 COBLO75128 1261 aa8.64□□□□□ -1.03
SMC4-220ENST00000488017 PCBP4P57723 403 aaKnown RBP8.64□□□□□ -1.03
SMC4-220ENST00000488017 SERTAD1Q9UHV2 236 aa8.64□□□□□ -1.03
SMC4-220ENST00000488017 ELOA3CA0A087WX78 387 aaPredicted RBP8.63□□□□□ -1.03
SMC4-220ENST00000488017 ELOA3DA6NLF2 546 aaPredicted RBP8.63□□□□□ -1.03
SMC4-220ENST00000488017 EFSO43281 561 aa8.63□□□□□ -1.03
SMC4-220ENST00000488017 ALAS2P22557 587 aa8.63□□□□□ -1.03
SMC4-220ENST00000488017 ELOA3BQ3SY89 546 aa8.63□□□□□ -1.03
SMC4-220ENST00000488017 ELOA3Q8NG57 546 aa8.63□□□□□ -1.03
SMC4-220ENST00000488017 SOX11P35716 441 aa8.62□□□□□ -1.03
SMC4-220ENST00000488017 TXKP42681 527 aa8.62□□□□□ -1.03
SMC4-220ENST00000488017 VAC14Q08AM6 782 aa8.62□□□□□ -1.03
SMC4-220ENST00000488017 WASHC4Q2M389 1173 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms