RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.75□□□□□ -0.05
COL3A1-206ENST00000487010 RPAP1Q9BWH6 1393 aaPredicted RBP14.75□□□□□ -0.05
COL3A1-206ENST00000487010 CEP170BQ9Y4F5 1589 aaPredicted RBP14.74□□□□□ -0.05
COL3A1-206ENST00000487010 KIAA2012Q0VF49 1180 aa14.74□□□□□ -0.05
COL3A1-206ENST00000487010 NECTIN2Q92692 538 aa14.74□□□□□ -0.05
COL3A1-206ENST00000487010 IGSF1Q8N6C5 1336 aa14.74□□□□□ -0.05
COL3A1-206ENST00000487010 PXDNLA1KZ92 1463 aa14.74□□□□□ -0.05
COL3A1-206ENST00000487010 SSH3Q8TE77 659 aa14.73□□□□□ -0.05
COL3A1-206ENST00000487010 IL1RAPL2Q9NP60 686 aa14.73□□□□□ -0.05
COL3A1-206ENST00000487010 SOS1Q07889 1333 aaPredicted RBP14.73□□□□□ -0.05
COL3A1-206ENST00000487010 TMEM2Q9UHN6 1383 aa14.73□□□□□ -0.05
COL3A1-206ENST00000487010 RAB11FIP3O75154 756 aa14.73□□□□□ -0.05
COL3A1-206ENST00000487010 UBTFL1P0CB47 393 aaPredicted RBP14.73□□□□□ -0.05
COL3A1-206ENST00000487010 ADAMTS13Q76LX8 1427 aa14.73□□□□□ -0.05
COL3A1-206ENST00000487010 TTC21AQ8NDW8 1320 aa14.73□□□□□ -0.05
COL3A1-206ENST00000487010 TNRQ92752 1358 aa14.72□□□□□ -0.05
COL3A1-206ENST00000487010 CCDC183Q5T5S1 534 aa14.72□□□□□ -0.05
COL3A1-206ENST00000487010 NUTM1Q86Y26 1132 aa14.72□□□□□ -0.05
COL3A1-206ENST00000487010 UBR1Q8IWV7 1749 aa14.72□□□□□ -0.05
COL3A1-206ENST00000487010 RAD50Q92878 1312 aa14.72□□□□□ -0.05
COL3A1-206ENST00000487010 GNAT3A8MTJ3 354 aa14.72□□□□□ -0.05
COL3A1-206ENST00000487010 SGSM2O43147 1006 aa14.72□□□□□ -0.05
COL3A1-206ENST00000487010 TTC14Q96N46 770 aa14.72□□□□□ -0.05
COL3A1-206ENST00000487010 SNX14Q9Y5W7 946 aa14.72□□□□□ -0.05
COL3A1-206ENST00000487010 LETM1O95202 739 aaPredicted RBP14.71□□□□□ -0.05
COL3A1-206ENST00000487010 ZSCAN22P10073 491 aaPredicted RBP14.71□□□□□ -0.05
COL3A1-206ENST00000487010 AMPHP49418 695 aa14.71□□□□□ -0.05
COL3A1-206ENST00000487010 MTERF4Q7Z6M4 381 aaKnown RBP14.71□□□□□ -0.05
COL3A1-206ENST00000487010 PI4K2BQ8TCG2 481 aa14.71□□□□□ -0.05
COL3A1-206ENST00000487010 CNPY2Q9Y2B0 182 aa14.71□□□□□ -0.05
COL3A1-206ENST00000487010 POLA2Q14181 598 aa14.7□□□□□ -0.06
COL3A1-206ENST00000487010 SURF6O75683 361 aaKnown RBP14.7□□□□□ -0.06
COL3A1-206ENST00000487010 MAP4K4O95819 1239 aaPredicted RBP14.7□□□□□ -0.06
COL3A1-206ENST00000487010 PPP1R42Q7Z4L9 355 aa14.7□□□□□ -0.06
COL3A1-206ENST00000487010 RHPN1Q8TCX5 695 aa14.7□□□□□ -0.06
COL3A1-206ENST00000487010 LSG1Q9H089 658 aaKnown RBP14.7□□□□□ -0.06
COL3A1-206ENST00000487010 BABAM1Q9NWV8 329 aa14.7□□□□□ -0.06
COL3A1-206ENST00000487010 AK2P54819 239 aa14.69□□□□□ -0.06
COL3A1-206ENST00000487010 UBE2HP62256 183 aa14.69□□□□□ -0.06
COL3A1-206ENST00000487010 USP25Q9UHP3 1055 aa14.69□□□□□ -0.06
COL3A1-206ENST00000487010 LIMCH1Q9UPQ0 1083 aa14.69□□□□□ -0.06
COL3A1-206ENST00000487010 STX6O43752 255 aa14.69□□□□□ -0.06
COL3A1-206ENST00000487010 TAF7Q15545 349 aaPredicted RBP14.69□□□□□ -0.06
COL3A1-206ENST00000487010 RUFY3Q7L099 469 aa14.69□□□□□ -0.06
COL3A1-206ENST00000487010 IL17REQ8NFR9 667 aa14.69□□□□□ -0.06
COL3A1-206ENST00000487010 PIBF1Q8WXW3 757 aa14.69□□□□□ -0.06
COL3A1-206ENST00000487010 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.69□□□□□ -0.06
COL3A1-206ENST00000487010 ADCY5O95622 1261 aa14.68□□□□□ -0.06
COL3A1-206ENST00000487010 SYT1P21579 422 aa14.68□□□□□ -0.06
COL3A1-206ENST00000487010 RASEFQ8IZ41 740 aa14.68□□□□□ -0.06
COL3A1-206ENST00000487010 CNTROBQ8N137 903 aa14.68□□□□□ -0.06
COL3A1-206ENST00000487010 KIF1BPQ96EK5 621 aa14.68□□□□□ -0.06
COL3A1-206ENST00000487010 PTPRUQ92729 1446 aa14.68□□□□□ -0.06
COL3A1-206ENST00000487010 F13A1P00488 732 aa14.67□□□□□ -0.06
COL3A1-206ENST00000487010 KLHL34Q8N239 644 aa14.67□□□□□ -0.06
COL3A1-206ENST00000487010 MYRIPQ8NFW9 859 aa14.67□□□□□ -0.06
COL3A1-206ENST00000487010 MAP3K5Q99683 1374 aa14.67□□□□□ -0.06
COL3A1-206ENST00000487010 HCLS1P14317 486 aaPredicted RBP14.67□□□□□ -0.06
COL3A1-206ENST00000487010 ZNF830Q96NB3 372 aaPredicted RBP14.67□□□□□ -0.06
COL3A1-206ENST00000487010 PHAXQ9H814 394 aaKnown RBP14.67□□□□□ -0.06
COL3A1-206ENST00000487010 SMC3Q9UQE7 1217 aa14.67□□□□□ -0.06
COL3A1-206ENST00000487010 ATP6V1DQ9Y5K8 247 aa14.67□□□□□ -0.06
COL3A1-206ENST00000487010 PLEKHG1Q9ULL1 1385 aa14.67□□□□□ -0.06
COL3A1-206ENST00000487010 LTKP29376 864 aa14.66□□□□□ -0.06
COL3A1-206ENST00000487010 NOLC1Q14978 699 aaKnown RBP eCLIP14.66□□□□□ -0.06
COL3A1-206ENST00000487010 DNTTIP2Q5QJE6 756 aaKnown RBP14.66□□□□□ -0.06
COL3A1-206ENST00000487010 HDGFL1Q5TGJ6 251 aa14.66□□□□□ -0.06
COL3A1-206ENST00000487010 CRYBG1Q9Y4K1 1723 aa14.66□□□□□ -0.06
COL3A1-206ENST00000487010 SRGAP3O43295 1099 aa14.65□□□□□ -0.06
COL3A1-206ENST00000487010 KDM4AO75164 1064 aa14.65□□□□□ -0.06
COL3A1-206ENST00000487010 MPNDQ8N594 471 aa14.65□□□□□ -0.06
COL3A1-206ENST00000487010 LARP6Q9BRS8 491 aaKnown RBP14.65□□□□□ -0.06
COL3A1-206ENST00000487010 PIK3C2AO00443 1686 aa14.65□□□□□ -0.06
COL3A1-206ENST00000487010 NWD1Q149M9 1564 aa14.65□□□□□ -0.06
COL3A1-206ENST00000487010 CWC27Q6UX04 472 aaKnown RBP14.65□□□□□ -0.06
COL3A1-206ENST00000487010 PRIMPOLQ96LW4 560 aa14.65□□□□□ -0.06
COL3A1-206ENST00000487010 FUCA2Q9BTY2 467 aa14.65□□□□□ -0.06
COL3A1-206ENST00000487010 USP42Q9H9J4 1324 aaKnown RBP14.65□□□□□ -0.06
COL3A1-206ENST00000487010 NGDNQ8NEJ9 315 aaKnown RBP14.64□□□□□ -0.07
COL3A1-206ENST00000487010 TTC12Q9H892 705 aaPredicted RBP14.64□□□□□ -0.07
COL3A1-206ENST00000487010 HYPKQ9NX55 129 aa14.64□□□□□ -0.07
COL3A1-206ENST00000487010 FIBPO43427 364 aa14.64□□□□□ -0.07
COL3A1-206ENST00000487010 HOXC9P31274 260 aa14.64□□□□□ -0.07
COL3A1-206ENST00000487010 TPRNQ4KMQ1 711 aa14.64□□□□□ -0.07
COL3A1-206ENST00000487010 SLC26A8Q96RN1 970 aa14.64□□□□□ -0.07
COL3A1-206ENST00000487010 SPG7Q9UQ90 795 aa14.64□□□□□ -0.07
COL3A1-206ENST00000487010 RGPD8O14715 1765 aaPredicted RBP14.64□□□□□ -0.07
COL3A1-206ENST00000487010 LARGE1O95461 756 aa14.63□□□□□ -0.07
COL3A1-206ENST00000487010 NBPF7P0C2Y1 421 aaPredicted RBP14.63□□□□□ -0.07
COL3A1-206ENST00000487010 CASTP20810 708 aaKnown RBP14.63□□□□□ -0.07
COL3A1-206ENST00000487010 HSP90AB4PQ58FF6 505 aa14.63□□□□□ -0.07
COL3A1-206ENST00000487010 SPTLC3Q9NUV7 552 aa14.63□□□□□ -0.07
COL3A1-206ENST00000487010 TTC41PQ6P2S7 1318 aa14.63□□□□□ -0.07
COL3A1-206ENST00000487010 CPA1P15085 419 aa14.62□□□□□ -0.07
COL3A1-206ENST00000487010 GJB2P29033 226 aa14.62□□□□□ -0.07
COL3A1-206ENST00000487010 HMGN5P82970 282 aaKnown RBP14.62□□□□□ -0.07
COL3A1-206ENST00000487010 MTMR6Q9Y217 621 aa14.62□□□□□ -0.07
COL3A1-206ENST00000487010 GLRX3O76003 335 aaKnown RBP14.62□□□□□ -0.07
COL3A1-206ENST00000487010 GTF2F1P35269 517 aaKnown RBP eCLIP14.62□□□□□ -0.07
COL3A1-206ENST00000487010 BEND3Q5T5X7 828 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms