RNA–Protein interactions for RNA: ENST00000486711.1

SMC4-218, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 621 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-218ENST00000486711 PSME1Q06323 249 aa9.32□□□□□ -0.92
SMC4-218ENST00000486711 DNAAF2Q9NVR5 837 aaKnown RBP9.32□□□□□ -0.92
SMC4-218ENST00000486711 ZDHHC3Q9NYG2 299 aa9.32□□□□□ -0.92
SMC4-218ENST00000486711 PCDHGC4Q9Y5F7 938 aa9.32□□□□□ -0.92
SMC4-218ENST00000486711 USP17L5A8MUK1 530 aa9.31□□□□□ -0.92
SMC4-218ENST00000486711 ZNF295-AS1Q8N0V1 137 aa9.31□□□□□ -0.92
SMC4-218ENST00000486711 GALNT6Q8NCL4 622 aa9.31□□□□□ -0.92
SMC4-218ENST00000486711 ZCCHC2Q9C0B9 1178 aaKnown RBP9.31□□□□□ -0.92
SMC4-218ENST00000486711 CABP1Q9NZU7 370 aa9.31□□□□□ -0.92
SMC4-218ENST00000486711 ARSJQ5FYB0 599 aaPredicted RBP9.3□□□□□ -0.92
SMC4-218ENST00000486711 GPAT2Q6NUI2 795 aa9.3□□□□□ -0.92
SMC4-218ENST00000486711 A0A1W2PNR3 127 aa9.29□□□□□ -0.92
SMC4-218ENST00000486711 SHISA8B8ZZ34 492 aa9.29□□□□□ -0.92
SMC4-218ENST00000486711 C2CD2LO14523 706 aa9.29□□□□□ -0.92
SMC4-218ENST00000486711 ATXN7O15265 892 aaPredicted RBP9.29□□□□□ -0.92
SMC4-218ENST00000486711 CTBSQ01459 385 aa9.29□□□□□ -0.92
SMC4-218ENST00000486711 SLCO4C1Q6ZQN7 724 aa9.29□□□□□ -0.92
SMC4-218ENST00000486711 TRIM50Q86XT4 487 aa9.29□□□□□ -0.92
SMC4-218ENST00000486711 EDARADDQ8WWZ3 215 aa9.29□□□□□ -0.92
SMC4-218ENST00000486711 ZNF358Q9NW07 568 aa9.29□□□□□ -0.92
SMC4-218ENST00000486711 USP3Q9Y6I4 520 aa9.29□□□□□ -0.92
SMC4-218ENST00000486711 C1orf229Q6ZS94 237 aaPredicted RBP9.28□□□□□ -0.92
SMC4-218ENST00000486711 DEPDC4Q8N2C3 294 aa9.28□□□□□ -0.92
SMC4-218ENST00000486711 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.28□□□□□ -0.92
SMC4-218ENST00000486711 SCHIP1Q9P0W5 487 aaPredicted RBP9.28□□□□□ -0.92
SMC4-218ENST00000486711 MKL2Q9ULH7 1088 aa9.28□□□□□ -0.92
SMC4-218ENST00000486711 POM121CA8CG34 1229 aa9.27□□□□□ -0.93
SMC4-218ENST00000486711 ARAFP10398 606 aa9.27□□□□□ -0.93
SMC4-218ENST00000486711 PLEKHM2Q8IWE5 1019 aa9.27□□□□□ -0.93
SMC4-218ENST00000486711 DCAF5Q96JK2 942 aa9.27□□□□□ -0.93
SMC4-218ENST00000486711 GGA1Q9UJY5 639 aa9.27□□□□□ -0.93
SMC4-218ENST00000486711 GJA3Q9Y6H8 435 aa9.27□□□□□ -0.93
SMC4-218ENST00000486711 ATP1A2P50993 1020 aa9.26□□□□□ -0.93
SMC4-218ENST00000486711 ADAMTS19Q8TE59 1207 aa9.26□□□□□ -0.93
SMC4-218ENST00000486711 ZIC5Q96T25 663 aa9.26□□□□□ -0.93
SMC4-218ENST00000486711 RRAGCQ9HB90 399 aa9.26□□□□□ -0.93
SMC4-218ENST00000486711 DCDC2BA2VCK2 349 aa9.25□□□□□ -0.93
SMC4-218ENST00000486711 USP17L3A6NCW0 530 aa9.25□□□□□ -0.93
SMC4-218ENST00000486711 USP17L4A6NCW7 530 aa9.25□□□□□ -0.93
SMC4-218ENST00000486711 FAM157BP0CG42 384 aa9.25□□□□□ -0.93
SMC4-218ENST00000486711 MAPTP10636 758 aaKnown RBP9.25□□□□□ -0.93
SMC4-218ENST00000486711 SNRPNP63162 240 aaKnown RBP9.25□□□□□ -0.93
SMC4-218ENST00000486711 TNP2Q05952 138 aa9.25□□□□□ -0.93
SMC4-218ENST00000486711 FAM182BQ5T319 152 aa9.25□□□□□ -0.93
SMC4-218ENST00000486711 USP17L2Q6R6M4 530 aa9.25□□□□□ -0.93
SMC4-218ENST00000486711 BICDL1Q6ZP65 573 aa9.25□□□□□ -0.93
SMC4-218ENST00000486711 USP17L1Q7RTZ2 530 aa9.25□□□□□ -0.93
SMC4-218ENST00000486711 KHNYNO15037 678 aaKnown RBP9.24□□□□□ -0.93
SMC4-218ENST00000486711 AMPD1P23109 780 aa9.24□□□□□ -0.93
SMC4-218ENST00000486711 EPHA4P54764 986 aa9.24□□□□□ -0.93
SMC4-218ENST00000486711 SUZ12Q15022 739 aaKnown RBP9.24□□□□□ -0.93
SMC4-218ENST00000486711 TEAD4Q15561 434 aa9.24□□□□□ -0.93
SMC4-218ENST00000486711 SAMD5Q5TGI4 173 aa9.24□□□□□ -0.93
SMC4-218ENST00000486711 HDGFL1Q5TGJ6 251 aa9.24□□□□□ -0.93
SMC4-218ENST00000486711 PARP3Q9Y6F1 533 aa9.24□□□□□ -0.93
SMC4-218ENST00000486711 ATP9BO43861 1147 aa9.23□□□□□ -0.93
SMC4-218ENST00000486711 EPXP11678 715 aa9.23□□□□□ -0.93
SMC4-218ENST00000486711 PLA2G4EQ3MJ16 856 aa9.23□□□□□ -0.93
SMC4-218ENST00000486711 SLC9A9Q8IVB4 645 aa9.23□□□□□ -0.93
SMC4-218ENST00000486711 TPCN2Q8NHX9 752 aa9.23□□□□□ -0.93
SMC4-218ENST00000486711 ZDHHC1Q8WTX9 485 aa9.23□□□□□ -0.93
SMC4-218ENST00000486711 L3MBTL2Q969R5 705 aa9.23□□□□□ -0.93
SMC4-218ENST00000486711 UCN2Q96RP3 112 aa9.23□□□□□ -0.93
SMC4-218ENST00000486711 AVENQ9NQS1 362 aaPredicted RBP9.23□□□□□ -0.93
SMC4-218ENST00000486711 TIMELESSQ9UNS1 1208 aa9.23□□□□□ -0.93
SMC4-218ENST00000486711 NEURL1BA8MQ27 555 aa9.22□□□□□ -0.93
SMC4-218ENST00000486711 PIK3R2O00459 728 aa9.22□□□□□ -0.93
SMC4-218ENST00000486711 CD33P20138 364 aa9.22□□□□□ -0.93
SMC4-218ENST00000486711 NOS2P35228 1153 aa9.22□□□□□ -0.93
SMC4-218ENST00000486711 TXLNAP40222 546 aa9.22□□□□□ -0.93
SMC4-218ENST00000486711 ALYREFQ86V81 257 aaKnown RBP9.22□□□□□ -0.93
SMC4-218ENST00000486711 GPC6Q9Y625 555 aaPredicted RBP9.22□□□□□ -0.93
SMC4-218ENST00000486711 ADH6P28332 368 aa9.21□□□□□ -0.94
SMC4-218ENST00000486711 LAMC2Q13753 1193 aa9.21□□□□□ -0.94
SMC4-218ENST00000486711 CCDC102BQ68D86 513 aa9.21□□□□□ -0.94
SMC4-218ENST00000486711 TNS4Q8IZW8 715 aa9.21□□□□□ -0.94
SMC4-218ENST00000486711 ZNF232Q9UNY5 417 aa9.21□□□□□ -0.94
SMC4-218ENST00000486711 MSTNO14793 375 aa9.2□□□□□ -0.94
SMC4-218ENST00000486711 ZBTB7BO15156 539 aaPredicted RBP9.2□□□□□ -0.94
SMC4-218ENST00000486711 BTBD6Q96KE9 485 aa9.2□□□□□ -0.94
SMC4-218ENST00000486711 MARK1Q9P0L2 795 aa9.2□□□□□ -0.94
SMC4-218ENST00000486711 KIAA1024Q9UPX6 916 aa9.2□□□□□ -0.94
SMC4-218ENST00000486711 SERTM1A2A2V5 107 aa9.19□□□□□ -0.94
SMC4-218ENST00000486711 EML1O00423 815 aa9.19□□□□□ -0.94
SMC4-218ENST00000486711 CLDN10P78369 228 aa9.19□□□□□ -0.94
SMC4-218ENST00000486711 TBCELQ5QJ74 424 aa9.19□□□□□ -0.94
SMC4-218ENST00000486711 C14orf37Q86TY3 774 aa9.19□□□□□ -0.94
SMC4-218ENST00000486711 LARGE2Q8N3Y3 721 aa9.19□□□□□ -0.94
SMC4-218ENST00000486711 HCN2Q9UL51 889 aa9.19□□□□□ -0.94
SMC4-218ENST00000486711 CHMP3Q9Y3E7 222 aa9.19□□□□□ -0.94
SMC4-218ENST00000486711 PALM3A6NDB9 673 aaPredicted RBP9.18□□□□□ -0.94
SMC4-218ENST00000486711 M0R2N6 131 aa9.18□□□□□ -0.94
SMC4-218ENST00000486711 EFSO43281 561 aa9.18□□□□□ -0.94
SMC4-218ENST00000486711 HOXB4P17483 251 aaPredicted RBP9.18□□□□□ -0.94
SMC4-218ENST00000486711 OGFOD1Q8N543 542 aa9.18□□□□□ -0.94
SMC4-218ENST00000486711 SPOCK3Q9BQ16 436 aa9.18□□□□□ -0.94
SMC4-218ENST00000486711 NEUROD4Q9HD90 331 aa9.18□□□□□ -0.94
SMC4-218ENST00000486711 MKRN1Q9UHC7 482 aaKnown RBP9.18□□□□□ -0.94
SMC4-218ENST00000486711 PRR12Q9ULL5 1215 aa9.18□□□□□ -0.94
SMC4-218ENST00000486711 RBM19Q9Y4C8 960 aaKnown RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms