RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 ZNF496Q96IT1 587 aaPredicted RBP17.06■□□□□ 0.32
CHMP3-208ENST00000486404 N4BP2Q86UW6 1770 aaPredicted RBP17.06■□□□□ 0.32
CHMP3-208ENST00000486404 INTS5Q6P9B9 1019 aaKnown RBP17.05■□□□□ 0.32
CHMP3-208ENST00000486404 ZBTB1Q9Y2K1 713 aa17.05■□□□□ 0.32
CHMP3-208ENST00000486404 ZPR1O75312 459 aa17.04■□□□□ 0.32
CHMP3-208ENST00000486404 GYS1P13807 737 aa17.04■□□□□ 0.32
CHMP3-208ENST00000486404 DCTN1Q14203 1278 aa17.04■□□□□ 0.32
CHMP3-208ENST00000486404 WDR43Q15061 677 aaKnown RBP eCLIP17.04■□□□□ 0.32
CHMP3-208ENST00000486404 NFE2L2Q16236 605 aa17.04■□□□□ 0.32
CHMP3-208ENST00000486404 TEX13AQ9BXU3 409 aaPredicted RBP17.04■□□□□ 0.32
CHMP3-208ENST00000486404 SRP68Q9UHB9 627 aaKnown RBP17.04■□□□□ 0.32
CHMP3-208ENST00000486404 PARP3Q9Y6F1 533 aa17.04■□□□□ 0.32
CHMP3-208ENST00000486404 BCORQ6W2J9 1755 aa17.04■□□□□ 0.32
CHMP3-208ENST00000486404 KIAA1551Q9HCM1 1747 aa17.04■□□□□ 0.32
CHMP3-208ENST00000486404 CANXP27824 592 aaKnown RBP17.03■□□□□ 0.32
CHMP3-208ENST00000486404 PPP4R3CPQ6ZMV5 832 aa17.03■□□□□ 0.32
CHMP3-208ENST00000486404 C10orf71Q711Q0 1435 aa17.03■□□□□ 0.32
CHMP3-208ENST00000486404 AFDNP55196 1824 aaKnown RBP17.03■□□□□ 0.32
CHMP3-208ENST00000486404 NPM2Q86SE8 214 aaKnown RBP17.02■□□□□ 0.32
CHMP3-208ENST00000486404 PLEKHF1Q96S99 279 aa17.02■□□□□ 0.32
CHMP3-208ENST00000486404 ZNF330Q9Y3S2 320 aaPredicted RBP17.02■□□□□ 0.32
CHMP3-208ENST00000486404 BRCA1P38398 1863 aaKnown RBP17.01■□□□□ 0.31
CHMP3-208ENST00000486404 A0A087WZG4 1122 aa17■□□□□ 0.31
CHMP3-208ENST00000486404 KCNQ3O43525 872 aa17■□□□□ 0.31
CHMP3-208ENST00000486404 USPL1Q5W0Q7 1092 aa17■□□□□ 0.31
CHMP3-208ENST00000486404 PRKRIP1Q9H875 184 aaPredicted RBP17■□□□□ 0.31
CHMP3-208ENST00000486404 PXDNLA1KZ92 1463 aa16.99■□□□□ 0.31
CHMP3-208ENST00000486404 LMOD3Q0VAK6 560 aa16.99■□□□□ 0.31
CHMP3-208ENST00000486404 FKBP8Q14318 412 aa16.99■□□□□ 0.31
CHMP3-208ENST00000486404 TAF7Q15545 349 aaPredicted RBP16.99■□□□□ 0.31
CHMP3-208ENST00000486404 PNISRQ8TF01 805 aaKnown RBP16.99■□□□□ 0.31
CHMP3-208ENST00000486404 GRIN3BO60391 1043 aa16.98■□□□□ 0.31
CHMP3-208ENST00000486404 NARFQ9UHQ1 456 aa16.98■□□□□ 0.31
CHMP3-208ENST00000486404 NRXN2Q9P2S2 1712 aa16.98■□□□□ 0.31
CHMP3-208ENST00000486404 SNRPA1P09661 255 aaKnown RBP16.97■□□□□ 0.31
CHMP3-208ENST00000486404 YBX3P16989 372 aaKnown RBP eCLIP16.97■□□□□ 0.31
CHMP3-208ENST00000486404 CCDC146Q8IYE0 955 aa16.97■□□□□ 0.31
CHMP3-208ENST00000486404 WWC3Q9ULE0 1092 aa16.97■□□□□ 0.31
CHMP3-208ENST00000486404 IL6STP40189 918 aaPredicted RBP16.96■□□□□ 0.31
CHMP3-208ENST00000486404 DDR1Q08345 913 aa16.96■□□□□ 0.31
CHMP3-208ENST00000486404 THUMPD2Q9BTF0 503 aaKnown RBP16.96■□□□□ 0.31
CHMP3-208ENST00000486404 DLEC1Q9Y238 1755 aa16.96■□□□□ 0.31
CHMP3-208ENST00000486404 ARFGEF1Q9Y6D6 1849 aa16.96■□□□□ 0.3
CHMP3-208ENST00000486404 GOLGB1Q14789 3259 aaKnown RBP16.95■□□□□ 0.3
CHMP3-208ENST00000486404 EIF5P55010 431 aaKnown RBP16.95■□□□□ 0.3
CHMP3-208ENST00000486404 RIPK4P57078 832 aa16.95■□□□□ 0.3
CHMP3-208ENST00000486404 MIS18AQ9NYP9 233 aa16.95■□□□□ 0.3
CHMP3-208ENST00000486404 ZNF316A6NFI3 1004 aaPredicted RBP16.94■□□□□ 0.3
CHMP3-208ENST00000486404 A1BGP04217 495 aa16.94■□□□□ 0.3
CHMP3-208ENST00000486404 TGFB2P61812 414 aa16.94■□□□□ 0.3
CHMP3-208ENST00000486404 UTRNP46939 3433 aa16.94■□□□□ 0.3
CHMP3-208ENST00000486404 PRAMEF22A3QJZ6 481 aa16.93■□□□□ 0.3
CHMP3-208ENST00000486404 POLRMTO00411 1230 aaKnown RBP16.93■□□□□ 0.3
CHMP3-208ENST00000486404 RUNDC1Q96C34 613 aa16.93■□□□□ 0.3
CHMP3-208ENST00000486404 RRP7AQ9Y3A4 280 aaKnown RBP16.93■□□□□ 0.3
CHMP3-208ENST00000486404 TMPOP42166 694 aaKnown RBP16.92■□□□□ 0.3
CHMP3-208ENST00000486404 NFIXQ14938 502 aa16.92■□□□□ 0.3
CHMP3-208ENST00000486404 NEUROD2Q15784 382 aa16.92■□□□□ 0.3
CHMP3-208ENST00000486404 BICDL1Q6ZP65 573 aa16.92■□□□□ 0.3
CHMP3-208ENST00000486404 TSPYL4Q9UJ04 414 aa16.92■□□□□ 0.3
CHMP3-208ENST00000486404 TBC1D2BQ9UPU7 963 aa16.92■□□□□ 0.3
CHMP3-208ENST00000486404 USP16Q9Y5T5 823 aa16.92■□□□□ 0.3
CHMP3-208ENST00000486404 CARMIL3Q8ND23 1372 aa16.91■□□□□ 0.3
CHMP3-208ENST00000486404 PIP4K2AP48426 406 aaPredicted RBP16.91■□□□□ 0.3
CHMP3-208ENST00000486404 DZIP3Q86Y13 1208 aaKnown RBP16.91■□□□□ 0.3
CHMP3-208ENST00000486404 ANKRD31Q8N7Z5 1873 aa16.9■□□□□ 0.3
CHMP3-208ENST00000486404 A0A0G2JLW4 131 aa16.9■□□□□ 0.3
CHMP3-208ENST00000486404 NPHP1O15259 732 aa16.9■□□□□ 0.3
CHMP3-208ENST00000486404 DPEP1P16444 411 aa16.9■□□□□ 0.3
CHMP3-208ENST00000486404 TM4SF1P30408 202 aa16.9■□□□□ 0.3
CHMP3-208ENST00000486404 BCL2L12Q9HB09 334 aa16.9■□□□□ 0.3
CHMP3-208ENST00000486404 ADAMTS8Q9UP79 889 aa16.9■□□□□ 0.3
CHMP3-208ENST00000486404 ZNF652Q9Y2D9 606 aa16.9■□□□□ 0.3
CHMP3-208ENST00000486404 CACNA1SQ13698 1873 aa16.9■□□□□ 0.3
CHMP3-208ENST00000486404 BCS1LQ9Y276 419 aa16.89■□□□□ 0.29
CHMP3-208ENST00000486404 COL11A2P13942 1736 aaPredicted RBP16.89■□□□□ 0.29
CHMP3-208ENST00000486404 NUP98P52948 1817 aa16.89■□□□□ 0.29
CHMP3-208ENST00000486404 SERPINB2P05120 415 aa16.88■□□□□ 0.29
CHMP3-208ENST00000486404 EIF4A1P60842 406 aaKnown RBP16.88■□□□□ 0.29
CHMP3-208ENST00000486404 ANP32CO43423 234 aa16.87■□□□□ 0.29
CHMP3-208ENST00000486404 CAMTA2O94983 1202 aa16.87■□□□□ 0.29
CHMP3-208ENST00000486404 TBC1D9BQ66K14 1250 aa16.87■□□□□ 0.29
CHMP3-208ENST00000486404 GIGYF1O75420 1035 aaPredicted RBP16.86■□□□□ 0.29
CHMP3-208ENST00000486404 ZNF784Q8NCA9 323 aaPredicted RBP16.86■□□□□ 0.29
CHMP3-208ENST00000486404 BABAM1Q9NWV8 329 aa16.86■□□□□ 0.29
CHMP3-208ENST00000486404 PIM2Q9P1W9 311 aa16.86■□□□□ 0.29
CHMP3-208ENST00000486404 NBPF26B4DH59 902 aa16.85■□□□□ 0.29
CHMP3-208ENST00000486404 KCNA4P22459 653 aa16.85■□□□□ 0.29
CHMP3-208ENST00000486404 CHRNA5P30532 468 aa16.85■□□□□ 0.29
CHMP3-208ENST00000486404 DALRD3Q5D0E6 543 aaKnown RBP16.85■□□□□ 0.29
CHMP3-208ENST00000486404 NBPF10Q6P3W6 841 aaKnown RBP16.85■□□□□ 0.29
CHMP3-208ENST00000486404 NBPF15Q8N660 670 aa16.85■□□□□ 0.29
CHMP3-208ENST00000486404 CNBD1Q8NA66 436 aa16.85■□□□□ 0.29
CHMP3-208ENST00000486404 SETDB2Q96T68 719 aa16.85■□□□□ 0.29
CHMP3-208ENST00000486404 LAS1LQ9Y4W2 734 aaKnown RBP16.85■□□□□ 0.29
CHMP3-208ENST00000486404 ANKRD36CQ5JPF3 1778 aa16.84■□□□□ 0.29
CHMP3-208ENST00000486404 ARFGEF2Q9Y6D5 1785 aa16.84■□□□□ 0.29
CHMP3-208ENST00000486404 ST5P78524 1137 aa16.84■□□□□ 0.29
CHMP3-208ENST00000486404 KIF6Q6ZMV9 814 aa16.84■□□□□ 0.29
CHMP3-208ENST00000486404 MYL6BP14649 208 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms