RNA–Protein interactions for RNA: ENST00000486211.1

XRN1-212, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 2

Gene XRN1, Length 1,180 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-212ENST00000486211 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.93□□□□□ -0.5
XRN1-212ENST00000486211 CIZ1Q9ULV3 898 aaPredicted RBP11.93□□□□□ -0.5
XRN1-212ENST00000486211 C4AP0C0L4 1744 aa11.92□□□□□ -0.5
XRN1-212ENST00000486211 MPRIPQ6WCQ1 1025 aa11.92□□□□□ -0.5
XRN1-212ENST00000486211 SMARCC1Q92922 1105 aaPredicted RBP11.92□□□□□ -0.5
XRN1-212ENST00000486211 ITGB4P16144 1822 aa11.92□□□□□ -0.5
XRN1-212ENST00000486211 CGNL1Q0VF96 1302 aa11.91□□□□□ -0.5
XRN1-212ENST00000486211 GNPATO15228 680 aa11.91□□□□□ -0.5
XRN1-212ENST00000486211 HOXC9P31274 260 aa11.91□□□□□ -0.5
XRN1-212ENST00000486211 KDM6AO15550 1401 aaPredicted RBP11.91□□□□□ -0.5
XRN1-212ENST00000486211 MAP3K19Q56UN5 1328 aa11.9□□□□□ -0.5
XRN1-212ENST00000486211 ITPK1Q13572 414 aa11.9□□□□□ -0.5
XRN1-212ENST00000486211 EDC4Q6P2E9 1401 aaKnown RBP11.9□□□□□ -0.5
XRN1-212ENST00000486211 ABHD8Q96I13 439 aa11.9□□□□□ -0.5
XRN1-212ENST00000486211 ZC3H4Q9UPT8 1303 aaKnown RBP11.89□□□□□ -0.51
XRN1-212ENST00000486211 LOC102724428A0A0B4J2F2 783 aa11.89□□□□□ -0.51
XRN1-212ENST00000486211 ST18O60284 1047 aa11.89□□□□□ -0.51
XRN1-212ENST00000486211 VEGFAP15692 232 aaPredicted RBP11.89□□□□□ -0.51
XRN1-212ENST00000486211 SIK1P57059 783 aa11.89□□□□□ -0.51
XRN1-212ENST00000486211 NBPF6Q5VWK0 638 aa11.89□□□□□ -0.51
XRN1-212ENST00000486211 PIGBQ92521 554 aa11.89□□□□□ -0.51
XRN1-212ENST00000486211 NBPF4Q96M43 638 aa11.89□□□□□ -0.51
XRN1-212ENST00000486211 CCDC87Q9NVE4 849 aa11.89□□□□□ -0.51
XRN1-212ENST00000486211 MKRN1Q9UHC7 482 aaKnown RBP11.89□□□□□ -0.51
XRN1-212ENST00000486211 PCDH11XQ9BZA7 1347 aa11.88□□□□□ -0.51
XRN1-212ENST00000486211 PCDH11YQ9BZA8 1340 aa11.88□□□□□ -0.51
XRN1-212ENST00000486211 CYP27B1O15528 508 aa11.88□□□□□ -0.51
XRN1-212ENST00000486211 CTCFP49711 727 aaPredicted RBP11.88□□□□□ -0.51
XRN1-212ENST00000486211 RGS19P49795 217 aa11.88□□□□□ -0.51
XRN1-212ENST00000486211 NLGN1Q8N2Q7 840 aa11.88□□□□□ -0.51
XRN1-212ENST00000486211 USHBP1Q8N6Y0 703 aa11.88□□□□□ -0.51
XRN1-212ENST00000486211 PIM2Q9P1W9 311 aa11.88□□□□□ -0.51
XRN1-212ENST00000486211 GLTPD2A6NH11 291 aa11.87□□□□□ -0.51
XRN1-212ENST00000486211 POTECB2RU33 542 aa11.87□□□□□ -0.51
XRN1-212ENST00000486211 TMF1P82094 1093 aa11.87□□□□□ -0.51
XRN1-212ENST00000486211 MLLT1Q03111 559 aaPredicted RBP11.87□□□□□ -0.51
XRN1-212ENST00000486211 PDAP1Q13442 181 aaKnown RBP11.87□□□□□ -0.51
XRN1-212ENST00000486211 DALRD3Q5D0E6 543 aaKnown RBP11.87□□□□□ -0.51
XRN1-212ENST00000486211 PDCD7Q8N8D1 485 aaKnown RBP11.87□□□□□ -0.51
XRN1-212ENST00000486211 L3MBTL3Q96JM7 780 aaPredicted RBP11.87□□□□□ -0.51
XRN1-212ENST00000486211 CNTNAP1P78357 1384 aa11.87□□□□□ -0.51
XRN1-212ENST00000486211 SNPHO15079 494 aa11.86□□□□□ -0.51
XRN1-212ENST00000486211 GYS1P13807 737 aa11.86□□□□□ -0.51
XRN1-212ENST00000486211 FBLN1P23142 703 aa11.86□□□□□ -0.51
XRN1-212ENST00000486211 RAPGEF4Q8WZA2 1011 aa11.86□□□□□ -0.51
XRN1-212ENST00000486211 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.86□□□□□ -0.519e-8■■■□□ 17.2
XRN1-212ENST00000486211 RASSF7Q02833 373 aa11.85□□□□□ -0.51
XRN1-212ENST00000486211 CDAN1Q8IWY9 1227 aa11.85□□□□□ -0.51
XRN1-212ENST00000486211 A0A1W2PP64 1363 aa11.84□□□□□ -0.51
XRN1-212ENST00000486211 RTL1A6NKG5 1358 aa11.84□□□□□ -0.51
XRN1-212ENST00000486211 TIAM2Q8IVF5 1701 aa11.84□□□□□ -0.51
XRN1-212ENST00000486211 TATP17735 454 aaPredicted RBP11.84□□□□□ -0.51
XRN1-212ENST00000486211 AMPHP49418 695 aa11.84□□□□□ -0.51
XRN1-212ENST00000486211 LBX1P52954 281 aa11.84□□□□□ -0.51
XRN1-212ENST00000486211 SLC12A5Q9H2X9 1139 aa11.84□□□□□ -0.51
XRN1-212ENST00000486211 WBP1LQ9NX94 342 aa11.84□□□□□ -0.51
XRN1-212ENST00000486211 PARP3Q9Y6F1 533 aa11.84□□□□□ -0.51
XRN1-212ENST00000486211 KDRP35968 1356 aa11.83□□□□□ -0.52
XRN1-212ENST00000486211 CHRNA5P30532 468 aa11.83□□□□□ -0.52
XRN1-212ENST00000486211 ATP6V1AP38606 617 aa11.83□□□□□ -0.52
XRN1-212ENST00000486211 NKX1-1Q15270 411 aaPredicted RBP11.83□□□□□ -0.52
XRN1-212ENST00000486211 TRAPPC3LQ5T215 181 aa11.83□□□□□ -0.52
XRN1-212ENST00000486211 HDGFL2Q7Z4V5 671 aaPredicted RBP11.83□□□□□ -0.52
XRN1-212ENST00000486211 ARHGEF1Q92888 912 aaKnown RBP11.83□□□□□ -0.52
XRN1-212ENST00000486211 ASAP1Q9ULH1 1129 aa11.83□□□□□ -0.52
XRN1-212ENST00000486211 VIRMAQ69YN4 1812 aaKnown RBP11.83□□□□□ -0.52
XRN1-212ENST00000486211 HSPA8P11142 646 aaKnown RBP11.82□□□□□ -0.52
XRN1-212ENST00000486211 LMNB1P20700 586 aa11.82□□□□□ -0.52
XRN1-212ENST00000486211 C3orf67Q6ZVT6 689 aa11.82□□□□□ -0.52
XRN1-212ENST00000486211 AIDAQ96BJ3 306 aa11.82□□□□□ -0.52
XRN1-212ENST00000486211 RTCBQ9Y3I0 505 aaKnown RBP11.82□□□□□ -0.52
XRN1-212ENST00000486211 VEGFBP49765 207 aa11.81□□□□□ -0.52
XRN1-212ENST00000486211 DDR1Q08345 913 aa11.81□□□□□ -0.52
XRN1-212ENST00000486211 SLC4A9Q96Q91 983 aa11.81□□□□□ -0.52
XRN1-212ENST00000486211 ZNF831Q5JPB2 1677 aa11.81□□□□□ -0.52
XRN1-212ENST00000486211 COL5A3P25940 1745 aaPredicted RBP11.8□□□□□ -0.52
XRN1-212ENST00000486211 TMC1Q8TDI8 760 aa11.8□□□□□ -0.52
XRN1-212ENST00000486211 ATG3Q9NT62 314 aa11.8□□□□□ -0.52
XRN1-212ENST00000486211 PASKQ96RG2 1323 aa11.8□□□□□ -0.52
XRN1-212ENST00000486211 RRS1Q15050 365 aaKnown RBP11.79□□□□□ -0.52
XRN1-212ENST00000486211 RC3H1Q5TC82 1133 aaKnown RBP11.79□□□□□ -0.52
XRN1-212ENST00000486211 COG3Q96JB2 828 aa11.79□□□□□ -0.52
XRN1-212ENST00000486211 NCAPD2Q15021 1401 aa11.78□□□□□ -0.52
XRN1-212ENST00000486211 SMG6Q86US8 1419 aaKnown RBP11.78□□□□□ -0.52
XRN1-212ENST00000486211 CCDC85CA6NKD9 419 aa11.78□□□□□ -0.52
XRN1-212ENST00000486211 RFC4P35249 363 aa11.78□□□□□ -0.52
XRN1-212ENST00000486211 TMEM121BQ9BXQ6 578 aaPredicted RBP11.78□□□□□ -0.52
XRN1-212ENST00000486211 TERF2IPQ9NYB0 399 aa11.78□□□□□ -0.52
XRN1-212ENST00000486211 TMOD3Q9NYL9 352 aa11.78□□□□□ -0.52
XRN1-212ENST00000486211 CNTNAP4Q9C0A0 1308 aa11.78□□□□□ -0.52
XRN1-212ENST00000486211 CCDC88AQ3V6T2 1871 aa11.78□□□□□ -0.52
XRN1-212ENST00000486211 ROCK2O75116 1388 aaKnown RBP11.78□□□□□ -0.52
XRN1-212ENST00000486211 NFKBIEO00221 500 aa11.77□□□□□ -0.53
XRN1-212ENST00000486211 RPS6KA4O75676 772 aa11.77□□□□□ -0.53
XRN1-212ENST00000486211 MYH14Q7Z406 1995 aaKnown RBP11.77□□□□□ -0.53
XRN1-212ENST00000486211 INSRP06213 1382 aa11.77□□□□□ -0.53
XRN1-212ENST00000486211 HSP90AB2PQ58FF8 381 aa11.76□□□□□ -0.53
XRN1-212ENST00000486211 SRP68Q9UHB9 627 aaKnown RBP11.76□□□□□ -0.53
XRN1-212ENST00000486211 DLEC1Q9Y238 1755 aa11.76□□□□□ -0.53
XRN1-212ENST00000486211 POLRMTO00411 1230 aaKnown RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms