RNA–Protein interactions for RNA: ENST00000485465.1

CHMP3-207, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 920 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-207ENST00000485465 CAMKK2Q96RR4 588 aa22.59■■□□□ 1.21
CHMP3-207ENST00000485465 RCAN3Q9UKA8 241 aa22.59■■□□□ 1.21
CHMP3-207ENST00000485465 LAMB4A4D0S4 1761 aa22.58■■□□□ 1.21
CHMP3-207ENST00000485465 RGPD3A6NKT7 1758 aaPredicted RBP22.58■■□□□ 1.21
CHMP3-207ENST00000485465 RGPD4Q7Z3J3 1758 aa22.58■■□□□ 1.21
CHMP3-207ENST00000485465 TCERG1O14776 1098 aaKnown RBP22.58■■□□□ 1.21
CHMP3-207ENST00000485465 ALDH1L2Q3SY69 923 aa22.58■■□□□ 1.21
CHMP3-207ENST00000485465 LINC00116Q8NCU8 138 aa22.58■■□□□ 1.21
CHMP3-207ENST00000485465 SSH1Q8WYL5 1049 aa22.58■■□□□ 1.21
CHMP3-207ENST00000485465 UPF1Q92900 1129 aaKnown RBP eCLIP22.58■■□□□ 1.21
CHMP3-207ENST00000485465 A1BGP04217 495 aa22.57■■□□□ 1.2
CHMP3-207ENST00000485465 EZH2Q15910 746 aaKnown RBP22.56■■□□□ 1.2
CHMP3-207ENST00000485465 DEFB132Q7Z7B7 95 aa22.56■■□□□ 1.2
CHMP3-207ENST00000485465 STK31Q9BXU1 1019 aa22.56■■□□□ 1.2
CHMP3-207ENST00000485465 CHPF2Q9P2E5 772 aa22.56■■□□□ 1.2
CHMP3-207ENST00000485465 ERBB4Q15303 1308 aa22.56■■□□□ 1.2
CHMP3-207ENST00000485465 HMGB2P26583 209 aaKnown RBP22.55■■□□□ 1.2
CHMP3-207ENST00000485465 CRKLP46109 303 aaKnown RBP22.55■■□□□ 1.2
CHMP3-207ENST00000485465 PDIA6Q15084 440 aa22.55■■□□□ 1.2
CHMP3-207ENST00000485465 DBF4Q9UBU7 674 aaPredicted RBP22.55■■□□□ 1.2
CHMP3-207ENST00000485465 NBPF26B4DH59 902 aa22.54■■□□□ 1.2
CHMP3-207ENST00000485465 SLC4A2P04920 1241 aa22.54■■□□□ 1.2
CHMP3-207ENST00000485465 RC3H1Q5TC82 1133 aaKnown RBP22.54■■□□□ 1.2
CHMP3-207ENST00000485465 NBPF14Q5TI25 921 aa22.54■■□□□ 1.2
CHMP3-207ENST00000485465 NBPF10Q6P3W6 841 aaKnown RBP22.54■■□□□ 1.2
CHMP3-207ENST00000485465 INTS5Q6P9B9 1019 aaKnown RBP22.54■■□□□ 1.2
CHMP3-207ENST00000485465 MRPL50Q8N5N7 158 aaKnown RBP22.54■■□□□ 1.2
CHMP3-207ENST00000485465 NBPF15Q8N660 670 aa22.54■■□□□ 1.2
CHMP3-207ENST00000485465 BCL2L13Q9BXK5 485 aa22.54■■□□□ 1.2
CHMP3-207ENST00000485465 DDX21Q9NR30 783 aaKnown RBP eCLIP22.54■■□□□ 1.2
CHMP3-207ENST00000485465 SMC4Q9NTJ3 1288 aa22.54■■□□□ 1.2
CHMP3-207ENST00000485465 CCDC87Q9NVE4 849 aa22.54■■□□□ 1.2
CHMP3-207ENST00000485465 CNTNAP4Q9C0A0 1308 aa22.54■■□□□ 1.2
CHMP3-207ENST00000485465 COL5A3P25940 1745 aaPredicted RBP22.54■■□□□ 1.2
CHMP3-207ENST00000485465 BCAR3O75815 825 aa22.53■■□□□ 1.2
CHMP3-207ENST00000485465 PROSER3Q2NL68 480 aa22.53■■□□□ 1.2
CHMP3-207ENST00000485465 ANXA1P04083 346 aa22.52■■□□□ 1.2
CHMP3-207ENST00000485465 PIP4K2AP48426 406 aaPredicted RBP22.52■■□□□ 1.2
CHMP3-207ENST00000485465 ZBTB1Q9Y2K1 713 aa22.52■■□□□ 1.2
CHMP3-207ENST00000485465 MYL6BP14649 208 aa22.51■■□□□ 1.19
CHMP3-207ENST00000485465 CANXP27824 592 aaKnown RBP22.51■■□□□ 1.19
CHMP3-207ENST00000485465 BRPF1P55201 1214 aaPredicted RBP22.51■■□□□ 1.19
CHMP3-207ENST00000485465 HYPKQ9NX55 129 aa22.51■■□□□ 1.19
CHMP3-207ENST00000485465 TAF1LQ8IZX4 1826 aa22.51■■□□□ 1.19
CHMP3-207ENST00000485465 LRP10Q7Z4F1 713 aa22.5■■□□□ 1.19
CHMP3-207ENST00000485465 RREB1Q92766 1687 aa22.49■■□□□ 1.19
CHMP3-207ENST00000485465 C4BP0C0L5 1744 aa22.49■■□□□ 1.19
CHMP3-207ENST00000485465 IL6STP40189 918 aaPredicted RBP22.48■■□□□ 1.19
CHMP3-207ENST00000485465 G2E3Q7L622 706 aa22.48■■□□□ 1.19
CHMP3-207ENST00000485465 AK7Q96M32 723 aa22.48■■□□□ 1.19
CHMP3-207ENST00000485465 RPS6KA4O75676 772 aa22.47■■□□□ 1.19
CHMP3-207ENST00000485465 PHAXQ9H814 394 aaKnown RBP22.47■■□□□ 1.19
CHMP3-207ENST00000485465 GNPATO15228 680 aa22.46■■□□□ 1.19
CHMP3-207ENST00000485465 EIF5P55010 431 aaKnown RBP22.46■■□□□ 1.19
CHMP3-207ENST00000485465 AKT1S1Q96B36 256 aa22.46■■□□□ 1.19
CHMP3-207ENST00000485465 NOB1Q9ULX3 412 aaKnown RBP22.46■■□□□ 1.19
CHMP3-207ENST00000485465 MYH14Q7Z406 1995 aaKnown RBP22.46■■□□□ 1.19
CHMP3-207ENST00000485465 FLIIQ13045 1269 aa22.45■■□□□ 1.18
CHMP3-207ENST00000485465 COPS6Q7L5N1 327 aa22.45■■□□□ 1.18
CHMP3-207ENST00000485465 XAGE3Q8WTP9 111 aa22.45■■□□□ 1.18
CHMP3-207ENST00000485465 ZNF330Q9Y3S2 320 aaPredicted RBP22.45■■□□□ 1.18
CHMP3-207ENST00000485465 KIF16BQ96L93 1317 aa22.45■■□□□ 1.18
CHMP3-207ENST00000485465 ZNF827Q17R98 1081 aa22.44■■□□□ 1.18
CHMP3-207ENST00000485465 RTCBQ9Y3I0 505 aaKnown RBP22.44■■□□□ 1.18
CHMP3-207ENST00000485465 AIMP1Q12904 312 aaKnown RBP22.43■■□□□ 1.18
CHMP3-207ENST00000485465 NPM2Q86SE8 214 aaKnown RBP22.43■■□□□ 1.18
CHMP3-207ENST00000485465 FRAT1Q92837 279 aaPredicted RBP22.43■■□□□ 1.18
CHMP3-207ENST00000485465 CACNA1FO60840 1977 aa22.43■■□□□ 1.18
CHMP3-207ENST00000485465 PTPRCP08575 1304 aa22.42■■□□□ 1.18
CHMP3-207ENST00000485465 IPO8O15397 1037 aaKnown RBP22.42■■□□□ 1.18
CHMP3-207ENST00000485465 ARHGAP45Q92619 1136 aa22.42■■□□□ 1.18
CHMP3-207ENST00000485465 SUPT16HQ9Y5B9 1047 aaKnown RBP22.42■■□□□ 1.18
CHMP3-207ENST00000485465 NUP188Q5SRE5 1749 aa22.42■■□□□ 1.18
CHMP3-207ENST00000485465 COL15A1P39059 1388 aa22.41■■□□□ 1.18
CHMP3-207ENST00000485465 A0A087WZG4 1122 aa22.41■■□□□ 1.18
CHMP3-207ENST00000485465 FKBP5Q13451 457 aaPredicted RBP22.41■■□□□ 1.18
CHMP3-207ENST00000485465 TTLL7Q6ZT98 887 aa22.41■■□□□ 1.18
CHMP3-207ENST00000485465 SMIM5Q71RC9 77 aa22.41■■□□□ 1.18
CHMP3-207ENST00000485465 AMIGO3Q86WK7 504 aa22.41■■□□□ 1.18
CHMP3-207ENST00000485465 DDX58O95786 925 aaKnown RBP22.4■■□□□ 1.18
CHMP3-207ENST00000485465 ZKSCAN2Q63HK3 967 aa22.4■■□□□ 1.18
CHMP3-207ENST00000485465 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.4■■□□□ 1.18
CHMP3-207ENST00000485465 ANO8Q9HCE9 1232 aaPredicted RBP22.4■■□□□ 1.18
CHMP3-207ENST00000485465 STK32BQ9NY57 414 aa22.4■■□□□ 1.18
CHMP3-207ENST00000485465 TFCP2L1Q9NZI6 479 aa22.4■■□□□ 1.18
CHMP3-207ENST00000485465 RNF123Q5XPI4 1314 aa22.39■■□□□ 1.18
CHMP3-207ENST00000485465 PLIN1O60240 522 aa22.39■■□□□ 1.17
CHMP3-207ENST00000485465 ADRA2BP18089 450 aa22.39■■□□□ 1.17
CHMP3-207ENST00000485465 SSFA2P28290 1259 aa22.39■■□□□ 1.17
CHMP3-207ENST00000485465 RRP1P56182 461 aaKnown RBP22.39■■□□□ 1.17
CHMP3-207ENST00000485465 SLC15A2Q16348 729 aa22.39■■□□□ 1.17
CHMP3-207ENST00000485465 TRAPPC3LQ5T215 181 aa22.39■■□□□ 1.17
CHMP3-207ENST00000485465 KIF6Q6ZMV9 814 aa22.39■■□□□ 1.17
CHMP3-207ENST00000485465 ANKRD13DQ6ZTN6 518 aa22.39■■□□□ 1.17
CHMP3-207ENST00000485465 DZIP3Q86Y13 1208 aaKnown RBP22.39■■□□□ 1.17
CHMP3-207ENST00000485465 ARXQ96QS3 562 aa22.39■■□□□ 1.17
CHMP3-207ENST00000485465 API5Q9BZZ5 524 aaKnown RBP22.39■■□□□ 1.17
CHMP3-207ENST00000485465 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.38■■□□□ 1.17
CHMP3-207ENST00000485465 PHF14O94880 888 aa22.38■■□□□ 1.17
CHMP3-207ENST00000485465 KSR2Q6VAB6 950 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms