RNA–Protein interactions for RNA: ENST00000484305.1

HDAC1-209, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-209ENST00000484305 CANXP27824 592 aaKnown RBP17.09■□□□□ 0.33
HDAC1-209ENST00000484305 PELP1Q8IZL8 1130 aaKnown RBP17.09■□□□□ 0.33
HDAC1-209ENST00000484305 MAPK8IP3Q9UPT6 1336 aa17.09■□□□□ 0.33
HDAC1-209ENST00000484305 CHD4Q14839 1912 aa17.08■□□□□ 0.33
HDAC1-209ENST00000484305 COL15A1P39059 1388 aa17.08■□□□□ 0.32
HDAC1-209ENST00000484305 STARD3NLO95772 234 aa17.08■□□□□ 0.32
HDAC1-209ENST00000484305 FKBP8Q14318 412 aa17.08■□□□□ 0.32
HDAC1-209ENST00000484305 TEX13AQ9BXU3 409 aaPredicted RBP17.08■□□□□ 0.32
HDAC1-209ENST00000484305 KIF13BQ9NQT8 1826 aa17.07■□□□□ 0.32
HDAC1-209ENST00000484305 YY1P25490 414 aa17.07■□□□□ 0.32
HDAC1-209ENST00000484305 TAF7Q15545 349 aaPredicted RBP17.07■□□□□ 0.32
HDAC1-209ENST00000484305 MIS18AQ9NYP9 233 aa17.07■□□□□ 0.32
HDAC1-209ENST00000484305 ZPR1O75312 459 aa17.06■□□□□ 0.32
HDAC1-209ENST00000484305 YBX3P16989 372 aaKnown RBP eCLIP17.06■□□□□ 0.32
HDAC1-209ENST00000484305 USPL1Q5W0Q7 1092 aa17.06■□□□□ 0.32
HDAC1-209ENST00000484305 THUMPD2Q9BTF0 503 aaKnown RBP17.06■□□□□ 0.32
HDAC1-209ENST00000484305 GOLGB1Q14789 3259 aaKnown RBP17.05■□□□□ 0.32
HDAC1-209ENST00000484305 PRAMEF22A3QJZ6 481 aa17.05■□□□□ 0.32
HDAC1-209ENST00000484305 ZNF316A6NFI3 1004 aaPredicted RBP17.05■□□□□ 0.32
HDAC1-209ENST00000484305 A1BGP04217 495 aa17.05■□□□□ 0.32
HDAC1-209ENST00000484305 EIF5P55010 431 aaKnown RBP17.05■□□□□ 0.32
HDAC1-209ENST00000484305 NARFQ9UHQ1 456 aa17.05■□□□□ 0.32
HDAC1-209ENST00000484305 USP16Q9Y5T5 823 aa17.05■□□□□ 0.32
HDAC1-209ENST00000484305 PARP3Q9Y6F1 533 aa17.05■□□□□ 0.32
HDAC1-209ENST00000484305 KDM3BQ7LBC6 1761 aa17.05■□□□□ 0.32
HDAC1-209ENST00000484305 CCDC146Q8IYE0 955 aa17.04■□□□□ 0.32
HDAC1-209ENST00000484305 N4BP2Q86UW6 1770 aaPredicted RBP17.04■□□□□ 0.32
HDAC1-209ENST00000484305 KIAA1551Q9HCM1 1747 aa17.04■□□□□ 0.32
HDAC1-209ENST00000484305 SNRPA1P09661 255 aaKnown RBP17.03■□□□□ 0.32
HDAC1-209ENST00000484305 TM4SF1P30408 202 aa17.03■□□□□ 0.32
HDAC1-209ENST00000484305 RIPK4P57078 832 aa17.03■□□□□ 0.32
HDAC1-209ENST00000484305 DDR1Q08345 913 aa17.03■□□□□ 0.32
HDAC1-209ENST00000484305 WDR43Q15061 677 aaKnown RBP eCLIP17.03■□□□□ 0.32
HDAC1-209ENST00000484305 BCL2L12Q9HB09 334 aa17.03■□□□□ 0.32
HDAC1-209ENST00000484305 ADAMTS8Q9UP79 889 aa17.03■□□□□ 0.32
HDAC1-209ENST00000484305 TMPOP42166 694 aaKnown RBP17.02■□□□□ 0.32
HDAC1-209ENST00000484305 WWC3Q9ULE0 1092 aa17.02■□□□□ 0.32
HDAC1-209ENST00000484305 ZNF330Q9Y3S2 320 aaPredicted RBP17.02■□□□□ 0.32
HDAC1-209ENST00000484305 C10orf71Q711Q0 1435 aa17.02■□□□□ 0.31
HDAC1-209ENST00000484305 AFDNP55196 1824 aaKnown RBP17.01■□□□□ 0.31
HDAC1-209ENST00000484305 POLRMTO00411 1230 aaKnown RBP17.01■□□□□ 0.31
HDAC1-209ENST00000484305 IL6STP40189 918 aaPredicted RBP17.01■□□□□ 0.31
HDAC1-209ENST00000484305 PIP4K2AP48426 406 aaPredicted RBP17.01■□□□□ 0.31
HDAC1-209ENST00000484305 PNISRQ8TF01 805 aaKnown RBP17.01■□□□□ 0.31
HDAC1-209ENST00000484305 RRP7AQ9Y3A4 280 aaKnown RBP17.01■□□□□ 0.31
HDAC1-209ENST00000484305 PXDNLA1KZ92 1463 aa17■□□□□ 0.31
HDAC1-209ENST00000484305 A0A087WZG4 1122 aa17■□□□□ 0.31
HDAC1-209ENST00000484305 NFIXQ14938 502 aa17■□□□□ 0.31
HDAC1-209ENST00000484305 RUNDC1Q96C34 613 aa17■□□□□ 0.31
HDAC1-209ENST00000484305 TBC1D2BQ9UPU7 963 aa17■□□□□ 0.31
HDAC1-209ENST00000484305 A0A0G2JLW4 131 aa16.99■□□□□ 0.31
HDAC1-209ENST00000484305 TGFB2P61812 414 aa16.99■□□□□ 0.31
HDAC1-209ENST00000484305 NEUROD2Q15784 382 aa16.99■□□□□ 0.31
HDAC1-209ENST00000484305 SCN7AQ01118 1682 aa16.99■□□□□ 0.31
HDAC1-209ENST00000484305 LAMB4A4D0S4 1761 aa16.99■□□□□ 0.31
HDAC1-209ENST00000484305 GRIN3BO60391 1043 aa16.98■□□□□ 0.31
HDAC1-209ENST00000484305 EIF4A1P60842 406 aaKnown RBP16.98■□□□□ 0.31
HDAC1-209ENST00000484305 NRXN2Q9P2S2 1712 aa16.98■□□□□ 0.31
HDAC1-209ENST00000484305 NBPF26B4DH59 902 aa16.97■□□□□ 0.31
HDAC1-209ENST00000484305 GIGYF1O75420 1035 aaPredicted RBP16.97■□□□□ 0.31
HDAC1-209ENST00000484305 DPEP1P16444 411 aa16.97■□□□□ 0.31
HDAC1-209ENST00000484305 NBPF10Q6P3W6 841 aaKnown RBP16.97■□□□□ 0.31
HDAC1-209ENST00000484305 NBPF15Q8N660 670 aa16.97■□□□□ 0.31
HDAC1-209ENST00000484305 BCORQ6W2J9 1755 aa16.97■□□□□ 0.31
HDAC1-209ENST00000484305 BRCA1P38398 1863 aaKnown RBP16.97■□□□□ 0.31
HDAC1-209ENST00000484305 LMOD3Q0VAK6 560 aa16.96■□□□□ 0.31
HDAC1-209ENST00000484305 CCDC184Q52MB2 194 aa16.96■□□□□ 0.31
HDAC1-209ENST00000484305 TBC1D9BQ66K14 1250 aa16.96■□□□□ 0.31
HDAC1-209ENST00000484305 BICDL1Q6ZP65 573 aa16.96■□□□□ 0.31
HDAC1-209ENST00000484305 NPM2Q86SE8 214 aaKnown RBP16.96■□□□□ 0.31
HDAC1-209ENST00000484305 TRIM35Q9UPQ4 493 aa16.96■□□□□ 0.31
HDAC1-209ENST00000484305 CAMTA2O94983 1202 aa16.95■□□□□ 0.3
HDAC1-209ENST00000484305 SERPINB2P05120 415 aa16.95■□□□□ 0.3
HDAC1-209ENST00000484305 DZIP3Q86Y13 1208 aaKnown RBP16.95■□□□□ 0.3
HDAC1-209ENST00000484305 TSPYL4Q9UJ04 414 aa16.95■□□□□ 0.3
HDAC1-209ENST00000484305 KCNA3P22001 575 aa16.94■□□□□ 0.3
HDAC1-209ENST00000484305 CHRNA5P30532 468 aa16.92■□□□□ 0.3
HDAC1-209ENST00000484305 ZNF784Q8NCA9 323 aaPredicted RBP16.92■□□□□ 0.3
HDAC1-209ENST00000484305 BABAM1Q9NWV8 329 aa16.92■□□□□ 0.3
HDAC1-209ENST00000484305 BCS1LQ9Y276 419 aa16.92■□□□□ 0.3
HDAC1-209ENST00000484305 APAF1O14727 1248 aa16.91■□□□□ 0.3
HDAC1-209ENST00000484305 CARMIL3Q8ND23 1372 aa16.9■□□□□ 0.3
HDAC1-209ENST00000484305 CHL1O00533 1208 aa16.9■□□□□ 0.3
HDAC1-209ENST00000484305 PIM2Q9P1W9 311 aa16.9■□□□□ 0.3
HDAC1-209ENST00000484305 LAS1LQ9Y4W2 734 aaKnown RBP16.9■□□□□ 0.3
HDAC1-209ENST00000484305 ARFGEF1Q9Y6D6 1849 aa16.9■□□□□ 0.3
HDAC1-209ENST00000484305 ANKRD31Q8N7Z5 1873 aa16.9■□□□□ 0.3
HDAC1-209ENST00000484305 ANP32CO43423 234 aa16.89■□□□□ 0.29
HDAC1-209ENST00000484305 CLEC4GQ6UXB4 293 aa16.89■□□□□ 0.29
HDAC1-209ENST00000484305 NGEFQ8N5V2 710 aa16.89■□□□□ 0.29
HDAC1-209ENST00000484305 SETDB2Q96T68 719 aa16.89■□□□□ 0.29
HDAC1-209ENST00000484305 DLEC1Q9Y238 1755 aa16.88■□□□□ 0.29
HDAC1-209ENST00000484305 MYL6BP14649 208 aa16.88■□□□□ 0.29
HDAC1-209ENST00000484305 PRR5LQ6MZQ0 368 aa16.88■□□□□ 0.29
HDAC1-209ENST00000484305 CCDC24Q8N4L8 307 aa16.88■□□□□ 0.29
HDAC1-209ENST00000484305 NUP98P52948 1817 aa16.87■□□□□ 0.29
HDAC1-209ENST00000484305 EIF2S2P20042 333 aaKnown RBP16.87■□□□□ 0.29
HDAC1-209ENST00000484305 HLFQ16534 295 aa16.87■□□□□ 0.29
HDAC1-209ENST00000484305 KRT24Q2M2I5 525 aa16.87■□□□□ 0.29
HDAC1-209ENST00000484305 ZNF652Q9Y2D9 606 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms