RNA–Protein interactions for RNA: ENST00000483690.1

MCF2-207, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

TSL 3

Gene MCF2, Length 752 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-207ENST00000483690 ZNF232Q9UNY5 417 aa12.91□□□□□ -0.34
MCF2-207ENST00000483690 TEAD4Q15561 434 aa12.9□□□□□ -0.34
MCF2-207ENST00000483690 PPARGC1BQ86YN6 1023 aaKnown RBP12.9□□□□□ -0.34
MCF2-207ENST00000483690 CAPN5O15484 640 aaPredicted RBP12.89□□□□□ -0.35
MCF2-207ENST00000483690 UPP2O95045 317 aa12.89□□□□□ -0.35
MCF2-207ENST00000483690 GPC1P35052 558 aa12.88□□□□□ -0.35
MCF2-207ENST00000483690 NOS2P35228 1153 aa12.88□□□□□ -0.35
MCF2-207ENST00000483690 SLC27A3Q5K4L6 730 aa12.88□□□□□ -0.35
MCF2-207ENST00000483690 NIFKQ9BYG3 293 aaKnown RBP12.88□□□□□ -0.35
MCF2-207ENST00000483690 SAP130Q9H0E3 1048 aa12.88□□□□□ -0.35
MCF2-207ENST00000483690 EML1O00423 815 aa12.87□□□□□ -0.35
MCF2-207ENST00000483690 RGS20O76081 388 aa12.87□□□□□ -0.35
MCF2-207ENST00000483690 FAM13AO94988 1023 aa12.87□□□□□ -0.35
MCF2-207ENST00000483690 ERCC3P19447 782 aa12.87□□□□□ -0.35
MCF2-207ENST00000483690 GNASQ5JWF2 1037 aa12.87□□□□□ -0.35
MCF2-207ENST00000483690 POTEAQ6S8J7 498 aa12.87□□□□□ -0.35
MCF2-207ENST00000483690 LINC00528Q8N1L1 170 aa12.87□□□□□ -0.35
MCF2-207ENST00000483690 RHBDD1Q8TEB9 315 aa12.87□□□□□ -0.35
MCF2-207ENST00000483690 L3MBTL2Q969R5 705 aa12.87□□□□□ -0.35
MCF2-207ENST00000483690 NGLY1Q96IV0 654 aa12.87□□□□□ -0.35
MCF2-207ENST00000483690 INSM2Q96T92 566 aaPredicted RBP12.87□□□□□ -0.35
MCF2-207ENST00000483690 PDZRN3Q9UPQ7 1066 aa12.87□□□□□ -0.35
MCF2-207ENST00000483690 HIRAP54198 1017 aaPredicted RBP12.86□□□□□ -0.35
MCF2-207ENST00000483690 DNAJC14Q6Y2X3 702 aaPredicted RBP12.86□□□□□ -0.35
MCF2-207ENST00000483690 ZDHHC1Q8WTX9 485 aa12.86□□□□□ -0.35
MCF2-207ENST00000483690 QTRT2Q9H974 415 aaKnown RBP12.86□□□□□ -0.35
MCF2-207ENST00000483690 SPINT1O43278 529 aa12.85□□□□□ -0.35
MCF2-207ENST00000483690 RNF144AP50876 292 aaPredicted RBP12.85□□□□□ -0.35
MCF2-207ENST00000483690 COX20Q5RI15 118 aa12.85□□□□□ -0.35
MCF2-207ENST00000483690 ZNF295-AS1Q8N0V1 137 aa12.85□□□□□ -0.35
MCF2-207ENST00000483690 GRIP2Q9C0E4 1043 aa12.85□□□□□ -0.35
MCF2-207ENST00000483690 POLMQ9NP87 494 aaPredicted RBP12.85□□□□□ -0.35
MCF2-207ENST00000483690 AMOTL2Q9Y2J4 779 aa12.85□□□□□ -0.35
MCF2-207ENST00000483690 PARP3Q9Y6F1 533 aa12.85□□□□□ -0.35
MCF2-207ENST00000483690 NPR3P17342 541 aa12.84□□□□□ -0.35
MCF2-207ENST00000483690 ARHGAP4P98171 946 aa12.84□□□□□ -0.35
MCF2-207ENST00000483690 ECM1Q16610 540 aa12.84□□□□□ -0.35
MCF2-207ENST00000483690 SH3PXD2AQ5TCZ1 1133 aa12.84□□□□□ -0.35
MCF2-207ENST00000483690 MYO19Q96H55 970 aa12.84□□□□□ -0.35
MCF2-207ENST00000483690 HCN4Q9Y3Q4 1203 aa12.84□□□□□ -0.35
MCF2-207ENST00000483690 MPSTP25325 297 aa12.83□□□□□ -0.36
MCF2-207ENST00000483690 MAPK1P28482 360 aa12.83□□□□□ -0.36
MCF2-207ENST00000483690 ALDH16A1Q8IZ83 802 aa12.83□□□□□ -0.36
MCF2-207ENST00000483690 STIM2Q9P246 746 aa12.83□□□□□ -0.36
MCF2-207ENST00000483690 BMP2P12643 396 aa12.82□□□□□ -0.36
MCF2-207ENST00000483690 DCTN4Q9UJW0 460 aa12.82□□□□□ -0.36
MCF2-207ENST00000483690 FAM187AA6NFU0 413 aa12.81□□□□□ -0.36
MCF2-207ENST00000483690 RTN1Q16799 776 aa12.81□□□□□ -0.36
MCF2-207ENST00000483690 LRFN2Q9ULH4 789 aa12.81□□□□□ -0.36
MCF2-207ENST00000483690 TNFRSF10BO14763 440 aa12.8□□□□□ -0.36
MCF2-207ENST00000483690 CTSOP43234 321 aaPredicted RBP12.8□□□□□ -0.36
MCF2-207ENST00000483690 PLA2G4AP47712 749 aa12.8□□□□□ -0.36
MCF2-207ENST00000483690 RBM25P49756 843 aaKnown RBP12.8□□□□□ -0.36
MCF2-207ENST00000483690 PHACTR1Q9C0D0 580 aa12.8□□□□□ -0.36
MCF2-207ENST00000483690 C4orf17Q53FE4 359 aa12.79□□□□□ -0.36
MCF2-207ENST00000483690 C6orf118Q5T5N4 469 aa12.79□□□□□ -0.36
MCF2-207ENST00000483690 ALKBH2Q6NS38 261 aa12.79□□□□□ -0.36
MCF2-207ENST00000483690 MRPL14Q6P1L8 145 aaKnown RBP12.79□□□□□ -0.36
MCF2-207ENST00000483690 ABTB2Q8N961 1025 aa12.79□□□□□ -0.36
MCF2-207ENST00000483690 ANKRD33BA6NCL7 494 aa12.78□□□□□ -0.36
MCF2-207ENST00000483690 BRD2P25440 801 aaKnown RBP12.78□□□□□ -0.36
MCF2-207ENST00000483690 AAMPQ13685 434 aa12.78□□□□□ -0.36
MCF2-207ENST00000483690 NOM1Q5C9Z4 860 aaKnown RBP12.78□□□□□ -0.36
MCF2-207ENST00000483690 C1orf53Q5VUE5 145 aa12.78□□□□□ -0.36
MCF2-207ENST00000483690 ZSCAN29Q8IWY8 852 aaPredicted RBP12.78□□□□□ -0.36
MCF2-207ENST00000483690 DGKZQ13574 1117 aa12.77□□□□□ -0.37
MCF2-207ENST00000483690 NBPF1Q3BBV0 1214 aa12.77□□□□□ -0.37
MCF2-207ENST00000483690 C11orf91Q3C1V1 193 aa12.77□□□□□ -0.37
MCF2-207ENST00000483690 SPATA31C2B4DYI2 1134 aa12.76□□□□□ -0.37
MCF2-207ENST00000483690 NDUFB5O43674 189 aa12.76□□□□□ -0.37
MCF2-207ENST00000483690 AVPP01185 164 aa12.76□□□□□ -0.37
MCF2-207ENST00000483690 TXLNAP40222 546 aa12.76□□□□□ -0.37
MCF2-207ENST00000483690 EIF1AXP47813 144 aaKnown RBP12.76□□□□□ -0.37
MCF2-207ENST00000483690 SCARF1Q14162 830 aa12.76□□□□□ -0.37
MCF2-207ENST00000483690 ZNF428Q96B54 188 aa12.76□□□□□ -0.37
MCF2-207ENST00000483690 AIDAQ96BJ3 306 aa12.76□□□□□ -0.37
MCF2-207ENST00000483690 ASB16Q96NS5 453 aa12.76□□□□□ -0.37
MCF2-207ENST00000483690 PHKA2P46019 1235 aa12.75□□□□□ -0.37
MCF2-207ENST00000483690 BRPF3Q9ULD4 1205 aa12.75□□□□□ -0.37
MCF2-207ENST00000483690 PRICKLE2Q7Z3G6 844 aa12.74□□□□□ -0.37
MCF2-207ENST00000483690 RNF217Q8TC41 542 aa12.74□□□□□ -0.37
MCF2-207ENST00000483690 KLK14Q9P0G3 267 aa12.74□□□□□ -0.37
MCF2-207ENST00000483690 POU4F2Q12837 409 aa12.73□□□□□ -0.37
MCF2-207ENST00000483690 LYSMD3Q7Z3D4 306 aa12.73□□□□□ -0.37
MCF2-207ENST00000483690 ZDHHC3Q9NYG2 299 aa12.73□□□□□ -0.37
MCF2-207ENST00000483690 TATP17735 454 aaPredicted RBP12.72□□□□□ -0.37
MCF2-207ENST00000483690 CTC1Q2NKJ3 1217 aa12.72□□□□□ -0.37
MCF2-207ENST00000483690 NBPF10Q6P3W6 841 aaKnown RBP12.72□□□□□ -0.37
MCF2-207ENST00000483690 NPAS4Q8IUM7 802 aa12.72□□□□□ -0.37
MCF2-207ENST00000483690 RHPN1Q8TCX5 695 aa12.72□□□□□ -0.37
MCF2-207ENST00000483690 IFT43Q96FT9 208 aa12.72□□□□□ -0.37
MCF2-207ENST00000483690 BCL2L13Q9BXK5 485 aa12.72□□□□□ -0.37
MCF2-207ENST00000483690 RBM47A0AV96 593 aaKnown RBP12.71□□□□□ -0.37
MCF2-207ENST00000483690 TTLL8A6PVC2 850 aa12.71□□□□□ -0.37
MCF2-207ENST00000483690 BMP1P13497 986 aa12.71□□□□□ -0.37
MCF2-207ENST00000483690 HIF1AQ16665 826 aa12.71□□□□□ -0.37
MCF2-207ENST00000483690 PKDCCQ504Y2 493 aa12.71□□□□□ -0.37
MCF2-207ENST00000483690 WDR44Q5JSH3 913 aa12.71□□□□□ -0.37
MCF2-207ENST00000483690 RGL4Q8IZJ4 473 aa12.71□□□□□ -0.37
MCF2-207ENST00000483690 RBCK1Q9BYM8 510 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms