RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 GTF3C3Q9Y5Q9 886 aa10.58□□□□□ -0.72
USP4-210ENST00000483212 ZNF831Q5JPB2 1677 aa10.57□□□□□ -0.72
USP4-210ENST00000483212 SLC4A2P04920 1241 aa10.57□□□□□ -0.72
USP4-210ENST00000483212 SNRPA1P09661 255 aaKnown RBP10.57□□□□□ -0.72
USP4-210ENST00000483212 RXRBP28702 533 aa10.57□□□□□ -0.72
USP4-210ENST00000483212 PDE3AQ14432 1141 aa10.57□□□□□ -0.72
USP4-210ENST00000483212 PDIA6Q15084 440 aa10.57□□□□□ -0.72
USP4-210ENST00000483212 CCDC30Q5VVM6 783 aa10.57□□□□□ -0.72
USP4-210ENST00000483212 ZKSCAN2Q63HK3 967 aa10.57□□□□□ -0.72
USP4-210ENST00000483212 KRT27Q7Z3Y8 459 aa10.57□□□□□ -0.72
USP4-210ENST00000483212 LRP10Q7Z4F1 713 aa10.57□□□□□ -0.72
USP4-210ENST00000483212 VSIG10Q8N0Z9 540 aa10.57□□□□□ -0.72
USP4-210ENST00000483212 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.57□□□□□ -0.72
USP4-210ENST00000483212 ARHGAP45Q92619 1136 aa10.57□□□□□ -0.72
USP4-210ENST00000483212 USP16Q9Y5T5 823 aa10.57□□□□□ -0.72
USP4-210ENST00000483212 BTAF1O14981 1849 aa10.56□□□□□ -0.72
USP4-210ENST00000483212 RLBP1P12271 317 aa10.56□□□□□ -0.72
USP4-210ENST00000483212 TRIM27P14373 513 aa10.56□□□□□ -0.72
USP4-210ENST00000483212 FKBP8Q14318 412 aa10.56□□□□□ -0.72
USP4-210ENST00000483212 ATF7IPQ6VMQ6 1270 aa10.56□□□□□ -0.72
USP4-210ENST00000483212 G2E3Q7L622 706 aa10.56□□□□□ -0.72
USP4-210ENST00000483212 FRAT1Q92837 279 aaPredicted RBP10.56□□□□□ -0.72
USP4-210ENST00000483212 SYTL4Q96C24 671 aaPredicted RBP10.56□□□□□ -0.72
USP4-210ENST00000483212 ABCC4O15439 1325 aa10.56□□□□□ -0.72
USP4-210ENST00000483212 PALLDQ8WX93 1383 aa10.55□□□□□ -0.72
USP4-210ENST00000483212 RREB1Q92766 1687 aa10.55□□□□□ -0.72
USP4-210ENST00000483212 PTCD1O75127 700 aaKnown RBP10.55□□□□□ -0.72
USP4-210ENST00000483212 EIF2S2P20042 333 aaKnown RBP10.55□□□□□ -0.72
USP4-210ENST00000483212 PROSER3Q2NL68 480 aa10.55□□□□□ -0.72
USP4-210ENST00000483212 NECTIN2Q92692 538 aa10.55□□□□□ -0.72
USP4-210ENST00000483212 CHPF2Q9P2E5 772 aa10.55□□□□□ -0.72
USP4-210ENST00000483212 PTPRCP08575 1304 aa10.55□□□□□ -0.72
USP4-210ENST00000483212 ERBB4Q15303 1308 aa10.55□□□□□ -0.72
USP4-210ENST00000483212 NEFLP07196 543 aa10.54□□□□□ -0.72
USP4-210ENST00000483212 DNAJC10Q8IXB1 793 aa10.54□□□□□ -0.72
USP4-210ENST00000483212 PANK1Q8TE04 598 aa10.54□□□□□ -0.72
USP4-210ENST00000483212 CRBNQ96SW2 442 aa10.54□□□□□ -0.72
USP4-210ENST00000483212 STK31Q9BXU1 1019 aa10.54□□□□□ -0.72
USP4-210ENST00000483212 CHMP4AQ9BY43 222 aa10.54□□□□□ -0.72
USP4-210ENST00000483212 PHAXQ9H814 394 aaKnown RBP10.54□□□□□ -0.72
USP4-210ENST00000483212 DDX21Q9NR30 783 aaKnown RBP eCLIP10.54□□□□□ -0.72
USP4-210ENST00000483212 DBF4Q9UBU7 674 aaPredicted RBP10.54□□□□□ -0.72
USP4-210ENST00000483212 CACNA1FO60840 1977 aa10.54□□□□□ -0.72
USP4-210ENST00000483212 LY75O60449 1722 aa10.53□□□□□ -0.72
USP4-210ENST00000483212 NBPF26B4DH59 902 aa10.53□□□□□ -0.72
USP4-210ENST00000483212 IPO8O15397 1037 aaKnown RBP10.53□□□□□ -0.72
USP4-210ENST00000483212 ANXA1P04083 346 aa10.53□□□□□ -0.72
USP4-210ENST00000483212 FLIIQ13045 1269 aa10.53□□□□□ -0.72
USP4-210ENST00000483212 NBPF14Q5TI25 921 aa10.53□□□□□ -0.72
USP4-210ENST00000483212 ERICH6BQ5W0A0 696 aa10.53□□□□□ -0.72
USP4-210ENST00000483212 NBPF10Q6P3W6 841 aaKnown RBP10.53□□□□□ -0.72
USP4-210ENST00000483212 FAM196AQ6ZSG2 479 aa10.53□□□□□ -0.72
USP4-210ENST00000483212 DZIP1LQ8IYY4 767 aaKnown RBP10.53□□□□□ -0.72
USP4-210ENST00000483212 NBPF15Q8N660 670 aa10.53□□□□□ -0.72
USP4-210ENST00000483212 EXOC6Q8TAG9 804 aa10.53□□□□□ -0.72
USP4-210ENST00000483212 SMARCC1Q92922 1105 aaPredicted RBP10.53□□□□□ -0.72
USP4-210ENST00000483212 API5Q9BZZ5 524 aaKnown RBP10.53□□□□□ -0.72
USP4-210ENST00000483212 BCL11BQ9C0K0 894 aaPredicted RBP10.53□□□□□ -0.72
USP4-210ENST00000483212 EP400Q96L91 3159 aa10.53□□□□□ -0.72
USP4-210ENST00000483212 COL5A3P25940 1745 aaPredicted RBP10.53□□□□□ -0.72
USP4-210ENST00000483212 N4BP2Q86UW6 1770 aaPredicted RBP10.52□□□□□ -0.72
USP4-210ENST00000483212 LOC102724428A0A0B4J2F2 783 aa10.52□□□□□ -0.73
USP4-210ENST00000483212 CYP19A1P11511 503 aaPredicted RBP10.52□□□□□ -0.73
USP4-210ENST00000483212 CANXP27824 592 aaKnown RBP10.52□□□□□ -0.73
USP4-210ENST00000483212 SIK1P57059 783 aa10.52□□□□□ -0.73
USP4-210ENST00000483212 ITPK1Q13572 414 aa10.52□□□□□ -0.73
USP4-210ENST00000483212 CLUAP1Q96AJ1 413 aa10.52□□□□□ -0.73
USP4-210ENST00000483212 PXDNLA1KZ92 1463 aa10.52□□□□□ -0.73
USP4-210ENST00000483212 ADCY9O60503 1353 aa10.52□□□□□ -0.73
USP4-210ENST00000483212 A1BGP04217 495 aa10.51□□□□□ -0.73
USP4-210ENST00000483212 MVPQ14764 893 aaKnown RBP10.51□□□□□ -0.73
USP4-210ENST00000483212 TMEM57Q8N5G2 664 aa10.51□□□□□ -0.73
USP4-210ENST00000483212 TEX13AQ9BXU3 409 aaPredicted RBP10.51□□□□□ -0.73
USP4-210ENST00000483212 HYPKQ9NX55 129 aa10.51□□□□□ -0.73
USP4-210ENST00000483212 COG6Q9Y2V7 657 aa10.51□□□□□ -0.73
USP4-210ENST00000483212 TNS1Q9HBL0 1735 aaKnown RBP10.5□□□□□ -0.73
USP4-210ENST00000483212 MS4A1P11836 297 aa10.5□□□□□ -0.73
USP4-210ENST00000483212 PIP4K2AP48426 406 aaPredicted RBP10.5□□□□□ -0.73
USP4-210ENST00000483212 INTS3Q68E01 1043 aaKnown RBP10.5□□□□□ -0.73
USP4-210ENST00000483212 F6X3S4 739 aa10.49□□□□□ -0.73
USP4-210ENST00000483212 MYL6BP14649 208 aa10.49□□□□□ -0.73
USP4-210ENST00000483212 ATP6V1AP38606 617 aa10.49□□□□□ -0.73
USP4-210ENST00000483212 EVX2Q03828 476 aa10.49□□□□□ -0.73
USP4-210ENST00000483212 FKBP5Q13451 457 aaPredicted RBP10.49□□□□□ -0.73
USP4-210ENST00000483212 INTS5Q6P9B9 1019 aaKnown RBP10.49□□□□□ -0.73
USP4-210ENST00000483212 FTSJ3Q8IY81 847 aaKnown RBP10.49□□□□□ -0.73
USP4-210ENST00000483212 ATP10DQ9P241 1426 aa10.49□□□□□ -0.73
USP4-210ENST00000483212 NUP188Q5SRE5 1749 aa10.48□□□□□ -0.73
USP4-210ENST00000483212 TRIM37O94972 964 aa10.48□□□□□ -0.73
USP4-210ENST00000483212 STARD3NLO95772 234 aa10.48□□□□□ -0.73
USP4-210ENST00000483212 COPS6Q7L5N1 327 aa10.48□□□□□ -0.73
USP4-210ENST00000483212 LINC00116Q8NCU8 138 aa10.48□□□□□ -0.73
USP4-210ENST00000483212 XAGE3Q8WTP9 111 aa10.48□□□□□ -0.73
USP4-210ENST00000483212 ZBTB1Q9Y2K1 713 aa10.48□□□□□ -0.73
USP4-210ENST00000483212 KAT6BQ8WYB5 2073 aa10.47□□□□□ -0.73
USP4-210ENST00000483212 PI4KAP2A4QPH2 592 aa10.47□□□□□ -0.73
USP4-210ENST00000483212 ZBTB7BO15156 539 aaPredicted RBP10.47□□□□□ -0.73
USP4-210ENST00000483212 CRKLP46109 303 aaKnown RBP10.47□□□□□ -0.73
USP4-210ENST00000483212 KSR2Q6VAB6 950 aa10.47□□□□□ -0.73
USP4-210ENST00000483212 PI4KAP1Q8N8J0 262 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms