RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 SERPINB2P05120 415 aa10.66□□□□□ -0.7
USP54-213ENST00000481991 GRM1Q13255 1194 aa10.66□□□□□ -0.7
USP54-213ENST00000481991 C1orf141Q5JVX7 400 aa10.66□□□□□ -0.7
USP54-213ENST00000481991 ZNF530Q6P9A1 599 aaPredicted RBP10.66□□□□□ -0.7
USP54-213ENST00000481991 PAXIP1Q6ZW49 1069 aaPredicted RBP10.66□□□□□ -0.7
USP54-213ENST00000481991 PCDH10Q9P2E7 1040 aa10.66□□□□□ -0.7
USP54-213ENST00000481991 KIF13BQ9NQT8 1826 aa10.65□□□□□ -0.7
USP54-213ENST00000481991 TMEM88BA6NKF7 163 aa10.65□□□□□ -0.7
USP54-213ENST00000481991 NFIXQ14938 502 aa10.65□□□□□ -0.7
USP54-213ENST00000481991 TESK2Q96S53 571 aa10.65□□□□□ -0.7
USP54-213ENST00000481991 PKD1L3Q7Z443 1732 aa10.64□□□□□ -0.71
USP54-213ENST00000481991 KIAA1551Q9HCM1 1747 aa10.64□□□□□ -0.71
USP54-213ENST00000481991 TNRC6CQ9HCJ0 1690 aaKnown RBP10.64□□□□□ -0.71
USP54-213ENST00000481991 MAP2P11137 1827 aaKnown RBP10.64□□□□□ -0.71
USP54-213ENST00000481991 NFKBIEO00221 500 aa10.64□□□□□ -0.71
USP54-213ENST00000481991 DEFB115Q30KQ5 88 aa10.64□□□□□ -0.71
USP54-213ENST00000481991 INTS5Q6P9B9 1019 aaKnown RBP10.64□□□□□ -0.71
USP54-213ENST00000481991 CCDC24Q8N4L8 307 aa10.64□□□□□ -0.71
USP54-213ENST00000481991 POLR3GLQ9BT43 218 aa10.64□□□□□ -0.71
USP54-213ENST00000481991 BEGAINQ9BUH8 593 aa10.64□□□□□ -0.71
USP54-213ENST00000481991 ABT1Q9ULW3 272 aaKnown RBP10.64□□□□□ -0.71
USP54-213ENST00000481991 CNTNAP1P78357 1384 aa10.64□□□□□ -0.71
USP54-213ENST00000481991 ARFGEF1Q9Y6D6 1849 aa10.63□□□□□ -0.71
USP54-213ENST00000481991 WASHC2AQ641Q2 1341 aa10.63□□□□□ -0.71
USP54-213ENST00000481991 DNAJC10Q8IXB1 793 aa10.63□□□□□ -0.71
USP54-213ENST00000481991 WBP1LQ9NX94 342 aa10.63□□□□□ -0.71
USP54-213ENST00000481991 SBF1O95248 1867 aa10.63□□□□□ -0.71
USP54-213ENST00000481991 CANXP27824 592 aaKnown RBP10.62□□□□□ -0.71
USP54-213ENST00000481991 MAP2K1Q02750 393 aaPredicted RBP10.62□□□□□ -0.71
USP54-213ENST00000481991 EIF4A2Q14240 407 aaKnown RBP10.62□□□□□ -0.71
USP54-213ENST00000481991 CARD14Q9BXL6 1004 aa10.62□□□□□ -0.71
USP54-213ENST00000481991 ZNF330Q9Y3S2 320 aaPredicted RBP10.62□□□□□ -0.71
USP54-213ENST00000481991 KIF24Q5T7B8 1368 aa10.62□□□□□ -0.71
USP54-213ENST00000481991 IQCA1LA6NCM1 817 aa10.61□□□□□ -0.71
USP54-213ENST00000481991 HSPA8P11142 646 aaKnown RBP10.61□□□□□ -0.71
USP54-213ENST00000481991 AMOTQ4VCS5 1084 aa10.61□□□□□ -0.71
USP54-213ENST00000481991 LDHDQ86WU2 507 aa10.61□□□□□ -0.71
USP54-213ENST00000481991 POLKQ9UBT6 870 aa10.61□□□□□ -0.71
USP54-213ENST00000481991 KDRP35968 1356 aa10.61□□□□□ -0.71
USP54-213ENST00000481991 TONSLQ96HA7 1378 aa10.61□□□□□ -0.71
USP54-213ENST00000481991 PDE6BP35913 854 aa10.6□□□□□ -0.71
USP54-213ENST00000481991 CDCA8Q53HL2 280 aa10.6□□□□□ -0.71
USP54-213ENST00000481991 TAOK3Q9H2K8 898 aa10.6□□□□□ -0.71
USP54-213ENST00000481991 NARFQ9UHQ1 456 aa10.6□□□□□ -0.71
USP54-213ENST00000481991 WDR33Q9C0J8 1336 aaKnown RBP10.59□□□□□ -0.71
USP54-213ENST00000481991 BRCA1P38398 1863 aaKnown RBP10.59□□□□□ -0.71
USP54-213ENST00000481991 SLC39A6Q13433 755 aa10.59□□□□□ -0.71
USP54-213ENST00000481991 CNTROBQ8N137 903 aa10.59□□□□□ -0.71
USP54-213ENST00000481991 TAF1DQ9H5J8 278 aaPredicted RBP10.59□□□□□ -0.71
USP54-213ENST00000481991 TSKSQ9UJT2 592 aa10.59□□□□□ -0.71
USP54-213ENST00000481991 MAP1SQ66K74 1059 aaPredicted RBP10.58□□□□□ -0.72
USP54-213ENST00000481991 NPM2Q86SE8 214 aaKnown RBP10.58□□□□□ -0.72
USP54-213ENST00000481991 HACL1Q9UJ83 578 aa10.58□□□□□ -0.72
USP54-213ENST00000481991 KDM6AO15550 1401 aaPredicted RBP10.58□□□□□ -0.72
USP54-213ENST00000481991 PASKQ96RG2 1323 aa10.58□□□□□ -0.72
USP54-213ENST00000481991 CCDC88AQ3V6T2 1871 aa10.57□□□□□ -0.72
USP54-213ENST00000481991 ITGBL1O95965 494 aaPredicted RBP10.57□□□□□ -0.72
USP54-213ENST00000481991 CYP19A1P11511 503 aaPredicted RBP10.57□□□□□ -0.72
USP54-213ENST00000481991 MYH14Q7Z406 1995 aaKnown RBP10.57□□□□□ -0.72
USP54-213ENST00000481991 SOS1Q07889 1333 aaPredicted RBP10.57□□□□□ -0.72
USP54-213ENST00000481991 EPHX2P34913 555 aa10.56□□□□□ -0.72
USP54-213ENST00000481991 TBC1D9BQ66K14 1250 aa10.56□□□□□ -0.72
USP54-213ENST00000481991 SULT6B1Q6IMI4 303 aa10.56□□□□□ -0.72
USP54-213ENST00000481991 CNKSR1Q969H4 720 aa10.56□□□□□ -0.72
USP54-213ENST00000481991 GPR101Q96P66 508 aaPredicted RBP10.56□□□□□ -0.72
USP54-213ENST00000481991 BRIP1Q9BX63 1249 aa10.56□□□□□ -0.72
USP54-213ENST00000481991 BCL2L12Q9HB09 334 aa10.56□□□□□ -0.72
USP54-213ENST00000481991 TBC1D2BQ9UPU7 963 aa10.56□□□□□ -0.72
USP54-213ENST00000481991 ZBTB1Q9Y2K1 713 aa10.56□□□□□ -0.72
USP54-213ENST00000481991 PNMA8AQ86V59 439 aaPredicted RBP10.55□□□□□ -0.72
USP54-213ENST00000481991 SETDB2Q96T68 719 aa10.55□□□□□ -0.72
USP54-213ENST00000481991 LGR6Q9HBX8 967 aa10.55□□□□□ -0.72
USP54-213ENST00000481991 PDZRN3Q9UPQ7 1066 aa10.55□□□□□ -0.72
USP54-213ENST00000481991 COL15A1P39059 1388 aa10.54□□□□□ -0.72
USP54-213ENST00000481991 A0A087WZG4 1122 aa10.54□□□□□ -0.72
USP54-213ENST00000481991 RASSF10A6NK89 507 aa10.54□□□□□ -0.72
USP54-213ENST00000481991 ECE1P42892 770 aa10.54□□□□□ -0.72
USP54-213ENST00000481991 RGS19P49795 217 aa10.54□□□□□ -0.72
USP54-213ENST00000481991 ST5P78524 1137 aa10.54□□□□□ -0.72
USP54-213ENST00000481991 SOGA3Q5TF21 947 aa10.54□□□□□ -0.72
USP54-213ENST00000481991 CYP4F22Q6NT55 531 aa10.54□□□□□ -0.72
USP54-213ENST00000481991 PRPF40BQ6NWY9 871 aaKnown RBP10.54□□□□□ -0.72
USP54-213ENST00000481991 AEBP1Q8IUX7 1158 aa10.54□□□□□ -0.72
USP54-213ENST00000481991 CAPNS2Q96L46 248 aa10.54□□□□□ -0.72
USP54-213ENST00000481991 ZNF277Q9NRM2 450 aaPredicted RBP10.54□□□□□ -0.72
USP54-213ENST00000481991 GJA3Q9Y6H8 435 aa10.54□□□□□ -0.72
USP54-213ENST00000481991 CARMIL3Q8ND23 1372 aa10.53□□□□□ -0.72
USP54-213ENST00000481991 STARD3NLO95772 234 aa10.53□□□□□ -0.72
USP54-213ENST00000481991 PRR5LQ6MZQ0 368 aa10.53□□□□□ -0.72
USP54-213ENST00000481991 SLC52A2Q9HAB3 445 aa10.53□□□□□ -0.72
USP54-213ENST00000481991 RNF123Q5XPI4 1314 aa10.53□□□□□ -0.72
USP54-213ENST00000481991 NCAPD2Q15021 1401 aa10.52□□□□□ -0.73
USP54-213ENST00000481991 FMR1Q06787 632 aaKnown RBP eCLIP10.52□□□□□ -0.73
USP54-213ENST00000481991 DGKZQ13574 1117 aa10.52□□□□□ -0.73
USP54-213ENST00000481991 STYK1Q6J9G0 422 aa10.52□□□□□ -0.73
USP54-213ENST00000481991 TTC5Q8N0Z6 440 aa10.52□□□□□ -0.73
USP54-213ENST00000481991 CNBD1Q8NA66 436 aa10.52□□□□□ -0.73
USP54-213ENST00000481991 MASTLQ96GX5 879 aa10.52□□□□□ -0.73
USP54-213ENST00000481991 MCOLN1Q9GZU1 580 aa10.52□□□□□ -0.73
USP54-213ENST00000481991 DDX21Q9NR30 783 aaKnown RBP eCLIP10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms