RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 KCNQ3O43525 872 aa23.36■■□□□ 1.33
COL9A3-212ENST00000481800 PLEKHF1Q96S99 279 aa23.36■■□□□ 1.33
COL9A3-212ENST00000481800 COL15A1P39059 1388 aa23.36■■□□□ 1.33
COL9A3-212ENST00000481800 MYH14Q7Z406 1995 aaKnown RBP23.36■■□□□ 1.33
COL9A3-212ENST00000481800 TGFB2P61812 414 aa23.35■■□□□ 1.33
COL9A3-212ENST00000481800 NPM2Q86SE8 214 aaKnown RBP23.35■■□□□ 1.33
COL9A3-212ENST00000481800 NARFQ9UHQ1 456 aa23.35■■□□□ 1.33
COL9A3-212ENST00000481800 WWC3Q9ULE0 1092 aa23.35■■□□□ 1.33
COL9A3-212ENST00000481800 A0A087WZG4 1122 aa23.34■■□□□ 1.33
COL9A3-212ENST00000481800 TAF7Q15545 349 aaPredicted RBP23.33■■□□□ 1.33
COL9A3-212ENST00000481800 NFE2L2Q16236 605 aa23.33■■□□□ 1.33
COL9A3-212ENST00000481800 ZNF330Q9Y3S2 320 aaPredicted RBP23.33■■□□□ 1.33
COL9A3-212ENST00000481800 EIF5P55010 431 aaKnown RBP23.32■■□□□ 1.32
COL9A3-212ENST00000481800 VIRMAQ69YN4 1812 aaKnown RBP23.31■■□□□ 1.32
COL9A3-212ENST00000481800 SNRPA1P09661 255 aaKnown RBP23.31■■□□□ 1.32
COL9A3-212ENST00000481800 TM4SF1P30408 202 aa23.31■■□□□ 1.32
COL9A3-212ENST00000481800 DDR1Q08345 913 aa23.31■■□□□ 1.32
COL9A3-212ENST00000481800 ZNF784Q8NCA9 323 aaPredicted RBP23.31■■□□□ 1.32
COL9A3-212ENST00000481800 C10orf71Q711Q0 1435 aa23.31■■□□□ 1.32
COL9A3-212ENST00000481800 UBR2Q8IWV8 1755 aa23.3■■□□□ 1.32
COL9A3-212ENST00000481800 A0A0G2JLW4 131 aa23.3■■□□□ 1.32
COL9A3-212ENST00000481800 A1BGP04217 495 aa23.3■■□□□ 1.32
COL9A3-212ENST00000481800 PNISRQ8TF01 805 aaKnown RBP23.3■■□□□ 1.32
COL9A3-212ENST00000481800 C4AP0C0L4 1744 aa23.3■■□□□ 1.32
COL9A3-212ENST00000481800 POLRMTO00411 1230 aaKnown RBP23.29■■□□□ 1.32
COL9A3-212ENST00000481800 IL6STP40189 918 aaPredicted RBP23.29■■□□□ 1.32
COL9A3-212ENST00000481800 MIS18AQ9NYP9 233 aa23.28■■□□□ 1.32
COL9A3-212ENST00000481800 USP16Q9Y5T5 823 aa23.28■■□□□ 1.32
COL9A3-212ENST00000481800 SIPA1L3O60292 1781 aaPredicted RBP23.27■■□□□ 1.32
COL9A3-212ENST00000481800 DPEP1P16444 411 aa23.27■■□□□ 1.32
COL9A3-212ENST00000481800 NFIXQ14938 502 aa23.27■■□□□ 1.32
COL9A3-212ENST00000481800 WDR43Q15061 677 aaKnown RBP eCLIP23.27■■□□□ 1.32
COL9A3-212ENST00000481800 PXDNLA1KZ92 1463 aa23.27■■□□□ 1.32
COL9A3-212ENST00000481800 BCL2L12Q9HB09 334 aa23.26■■□□□ 1.31
COL9A3-212ENST00000481800 TBC1D2BQ9UPU7 963 aa23.26■■□□□ 1.31
COL9A3-212ENST00000481800 BCS1LQ9Y276 419 aa23.26■■□□□ 1.31
COL9A3-212ENST00000481800 PRAMEF22A3QJZ6 481 aa23.25■■□□□ 1.31
COL9A3-212ENST00000481800 RIPK4P57078 832 aa23.25■■□□□ 1.31
COL9A3-212ENST00000481800 THUMPD2Q9BTF0 503 aaKnown RBP23.25■■□□□ 1.31
COL9A3-212ENST00000481800 PRKRIP1Q9H875 184 aaPredicted RBP23.25■■□□□ 1.31
COL9A3-212ENST00000481800 BICDL1Q6ZP65 573 aa23.24■■□□□ 1.31
COL9A3-212ENST00000481800 SERPINB2P05120 415 aa23.23■■□□□ 1.31
COL9A3-212ENST00000481800 UTRNP46939 3433 aa23.23■■□□□ 1.31
COL9A3-212ENST00000481800 LMOD3Q0VAK6 560 aa23.22■■□□□ 1.31
COL9A3-212ENST00000481800 PIM2Q9P1W9 311 aa23.22■■□□□ 1.31
COL9A3-212ENST00000481800 PIP4K2AP48426 406 aaPredicted RBP23.21■■□□□ 1.31
COL9A3-212ENST00000481800 DZIP3Q86Y13 1208 aaKnown RBP23.21■■□□□ 1.31
COL9A3-212ENST00000481800 TMPOP42166 694 aaKnown RBP23.2■■□□□ 1.3
COL9A3-212ENST00000481800 TBC1D9BQ66K14 1250 aa23.2■■□□□ 1.3
COL9A3-212ENST00000481800 CCDC146Q8IYE0 955 aa23.2■■□□□ 1.3
COL9A3-212ENST00000481800 CHD4Q14839 1912 aa23.2■■□□□ 1.3
COL9A3-212ENST00000481800 CAMTA2O94983 1202 aa23.19■■□□□ 1.3
COL9A3-212ENST00000481800 KCNA3P22001 575 aa23.19■■□□□ 1.3
COL9A3-212ENST00000481800 CHRNA5P30532 468 aa23.19■■□□□ 1.3
COL9A3-212ENST00000481800 EIF4A1P60842 406 aaKnown RBP23.18■■□□□ 1.3
COL9A3-212ENST00000481800 NEUROD2Q15784 382 aa23.18■■□□□ 1.3
COL9A3-212ENST00000481800 DALRD3Q5D0E6 543 aaKnown RBP23.18■■□□□ 1.3
COL9A3-212ENST00000481800 RUNDC1Q96C34 613 aa23.18■■□□□ 1.3
COL9A3-212ENST00000481800 TSPYL4Q9UJ04 414 aa23.18■■□□□ 1.3
COL9A3-212ENST00000481800 KIF13BQ9NQT8 1826 aa23.17■■□□□ 1.3
COL9A3-212ENST00000481800 ARHGAP27Q6ZUM4 889 aa23.17■■□□□ 1.3
COL9A3-212ENST00000481800 SETDB2Q96T68 719 aa23.17■■□□□ 1.3
COL9A3-212ENST00000481800 ADAMTS8Q9UP79 889 aa23.17■■□□□ 1.3
COL9A3-212ENST00000481800 RRP7AQ9Y3A4 280 aaKnown RBP23.17■■□□□ 1.3
COL9A3-212ENST00000481800 NPHP1O15259 732 aa23.16■■□□□ 1.3
COL9A3-212ENST00000481800 GIGYF1O75420 1035 aaPredicted RBP23.16■■□□□ 1.3
COL9A3-212ENST00000481800 ZNF652Q9Y2D9 606 aa23.16■■□□□ 1.3
COL9A3-212ENST00000481800 CARMIL3Q8ND23 1372 aa23.15■■□□□ 1.3
COL9A3-212ENST00000481800 NBPF26B4DH59 902 aa23.15■■□□□ 1.3
COL9A3-212ENST00000481800 NBPF10Q6P3W6 841 aaKnown RBP23.15■■□□□ 1.3
COL9A3-212ENST00000481800 NBPF15Q8N660 670 aa23.15■■□□□ 1.3
COL9A3-212ENST00000481800 GOLGB1Q14789 3259 aaKnown RBP23.14■■□□□ 1.3
COL9A3-212ENST00000481800 CLEC4GQ6UXB4 293 aa23.14■■□□□ 1.29
COL9A3-212ENST00000481800 C2CD5Q86YS7 1000 aa23.13■■□□□ 1.29
COL9A3-212ENST00000481800 BABAM1Q9NWV8 329 aa23.13■■□□□ 1.29
COL9A3-212ENST00000481800 N4BP2Q86UW6 1770 aaPredicted RBP23.13■■□□□ 1.29
COL9A3-212ENST00000481800 H0YIN7 160 aa23.12■■□□□ 1.29
COL9A3-212ENST00000481800 KIAA1551Q9HCM1 1747 aa23.12■■□□□ 1.29
COL9A3-212ENST00000481800 ATP10DQ9P241 1426 aa23.11■■□□□ 1.29
COL9A3-212ENST00000481800 ZNF316A6NFI3 1004 aaPredicted RBP23.11■■□□□ 1.29
COL9A3-212ENST00000481800 NGEFQ8N5V2 710 aa23.11■■□□□ 1.29
COL9A3-212ENST00000481800 CNBD1Q8NA66 436 aa23.11■■□□□ 1.29
COL9A3-212ENST00000481800 BRIP1Q9BX63 1249 aa23.11■■□□□ 1.29
COL9A3-212ENST00000481800 PDE6BP35913 854 aa23.1■■□□□ 1.29
COL9A3-212ENST00000481800 ST5P78524 1137 aa23.1■■□□□ 1.29
COL9A3-212ENST00000481800 PRR5LQ6MZQ0 368 aa23.1■■□□□ 1.29
COL9A3-212ENST00000481800 PDZRN3Q9UPQ7 1066 aa23.1■■□□□ 1.29
COL9A3-212ENST00000481800 DLG5Q8TDM6 1919 aa23.1■■□□□ 1.29
COL9A3-212ENST00000481800 CCDC24Q8N4L8 307 aa23.09■■□□□ 1.29
COL9A3-212ENST00000481800 GPBP1L1Q9HC44 474 aaPredicted RBP23.09■■□□□ 1.29
COL9A3-212ENST00000481800 LAS1LQ9Y4W2 734 aaKnown RBP23.09■■□□□ 1.29
COL9A3-212ENST00000481800 RGL2O15211 777 aa23.08■■□□□ 1.29
COL9A3-212ENST00000481800 MYL6BP14649 208 aa23.08■■□□□ 1.29
COL9A3-212ENST00000481800 NBPF5PQ86XG9 351 aaPredicted RBP23.08■■□□□ 1.29
COL9A3-212ENST00000481800 TTLL6Q8N841 843 aa23.08■■□□□ 1.29
COL9A3-212ENST00000481800 ZNF526Q8TF50 670 aaPredicted RBP23.08■■□□□ 1.29
COL9A3-212ENST00000481800 SCN7AQ01118 1682 aa23.08■■□□□ 1.29
COL9A3-212ENST00000481800 ADCY9O60503 1353 aa23.07■■□□□ 1.28
COL9A3-212ENST00000481800 KIF6Q6ZMV9 814 aa23.07■■□□□ 1.28
COL9A3-212ENST00000481800 TRIM35Q9UPQ4 493 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms