RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 FAM200AQ8TCP9 573 aa22.41■■□□□ 1.18
CCDC88B-207ENST00000479965 SNX14Q9Y5W7 946 aa22.41■■□□□ 1.18
CCDC88B-207ENST00000479965 FAM173BQ6P4H8 233 aa22.4■■□□□ 1.18
CCDC88B-207ENST00000479965 CASTP20810 708 aaKnown RBP22.4■■□□□ 1.18
CCDC88B-207ENST00000479965 SPG7Q9UQ90 795 aa22.4■■□□□ 1.18
CCDC88B-207ENST00000479965 SMTNL1A8MU46 457 aa22.39■■□□□ 1.17
CCDC88B-207ENST00000479965 CHL1O00533 1208 aa22.39■■□□□ 1.17
CCDC88B-207ENST00000479965 CCT4P50991 539 aaKnown RBP22.39■■□□□ 1.17
CCDC88B-207ENST00000479965 ERICH4A6NGS2 130 aa22.39■■□□□ 1.17
CCDC88B-207ENST00000479965 MAP3K11Q16584 847 aa22.39■■□□□ 1.17
CCDC88B-207ENST00000479965 NUP62CLQ9H1M0 184 aa22.39■■□□□ 1.17
CCDC88B-207ENST00000479965 TYRO3Q06418 890 aa22.38■■□□□ 1.17
CCDC88B-207ENST00000479965 TAF3Q5VWG9 929 aa22.38■■□□□ 1.17
CCDC88B-207ENST00000479965 COG3Q96JB2 828 aa22.38■■□□□ 1.17
CCDC88B-207ENST00000479965 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.38■■□□□ 1.17
CCDC88B-207ENST00000479965 SOX12O15370 315 aa22.38■■□□□ 1.17
CCDC88B-207ENST00000479965 CWC27Q6UX04 472 aaKnown RBP22.38■■□□□ 1.17
CCDC88B-207ENST00000479965 TMEM51Q9NW97 253 aa22.38■■□□□ 1.17
CCDC88B-207ENST00000479965 SALL3Q9BXA9 1300 aa22.38■■□□□ 1.17
CCDC88B-207ENST00000479965 GOLGA6L4A6NEF3 574 aa22.37■■□□□ 1.17
CCDC88B-207ENST00000479965 KCNJ4P48050 445 aa22.37■■□□□ 1.17
CCDC88B-207ENST00000479965 NPHP1O15259 732 aa22.37■■□□□ 1.17
CCDC88B-207ENST00000479965 ANO6Q4KMQ2 910 aa22.37■■□□□ 1.17
CCDC88B-207ENST00000479965 LIG1P18858 919 aa22.37■■□□□ 1.17
CCDC88B-207ENST00000479965 DDX41Q9UJV9 622 aaKnown RBP22.37■■□□□ 1.17
CCDC88B-207ENST00000479965 MTMR6Q9Y217 621 aa22.36■■□□□ 1.17
CCDC88B-207ENST00000479965 NECAB1Q8N987 351 aa22.36■■□□□ 1.17
CCDC88B-207ENST00000479965 LRRFIP2Q9Y608 721 aaKnown RBP22.36■■□□□ 1.17
CCDC88B-207ENST00000479965 MRVI1Q9Y6F6 885 aa22.36■■□□□ 1.17
CCDC88B-207ENST00000479965 TNMDQ9H2S6 317 aa22.35■■□□□ 1.17
CCDC88B-207ENST00000479965 TSPYL4Q9UJ04 414 aa22.35■■□□□ 1.17
CCDC88B-207ENST00000479965 GABPB1Q06547 395 aaPredicted RBP22.35■■□□□ 1.17
CCDC88B-207ENST00000479965 ZSCAN25Q6NSZ9 544 aa22.35■■□□□ 1.17
CCDC88B-207ENST00000479965 CBX8Q9HC52 389 aa22.35■■□□□ 1.17
CCDC88B-207ENST00000479965 SLFN14P0C7P3 912 aa22.34■■□□□ 1.17
CCDC88B-207ENST00000479965 RTF1Q92541 710 aaKnown RBP22.34■■□□□ 1.17
CCDC88B-207ENST00000479965 TTC14Q96N46 770 aa22.34■■□□□ 1.17
CCDC88B-207ENST00000479965 SSH2Q76I76 1423 aa22.34■■□□□ 1.17
CCDC88B-207ENST00000479965 STK31Q9BXU1 1019 aa22.34■■□□□ 1.17
CCDC88B-207ENST00000479965 DACT1Q9NYF0 836 aa22.34■■□□□ 1.17
CCDC88B-207ENST00000479965 CDC42BPGQ6DT37 1551 aa22.34■■□□□ 1.17
CCDC88B-207ENST00000479965 KIAA0232Q92628 1395 aa22.34■■□□□ 1.17
CCDC88B-207ENST00000479965 NCKAP5LQ9HCH0 1330 aa22.34■■□□□ 1.17
CCDC88B-207ENST00000479965 TTC6Q86TZ1 520 aa22.33■■□□□ 1.17
CCDC88B-207ENST00000479965 RAD50Q92878 1312 aa22.33■■□□□ 1.17
CCDC88B-207ENST00000479965 KIF18AQ8NI77 898 aa22.33■■□□□ 1.17
CCDC88B-207ENST00000479965 JAKMIP1Q96N16 626 aaKnown RBP22.33■■□□□ 1.17
CCDC88B-207ENST00000479965 TFIP11Q9UBB9 837 aaKnown RBP22.33■■□□□ 1.17
CCDC88B-207ENST00000479965 CLIP2Q9UDT6 1046 aa22.33■■□□□ 1.17
CCDC88B-207ENST00000479965 PDE4CQ08493 712 aa22.33■■□□□ 1.16
CCDC88B-207ENST00000479965 CEP135Q66GS9 1140 aa22.33■■□□□ 1.16
CCDC88B-207ENST00000479965 STAG3Q9UJ98 1225 aa22.33■■□□□ 1.16
CCDC88B-207ENST00000479965 LMTK2Q8IWU2 1503 aa22.32■■□□□ 1.16
CCDC88B-207ENST00000479965 PAXBP1Q9Y5B6 917 aa22.32■■□□□ 1.16
CCDC88B-207ENST00000479965 SGSM2O43147 1006 aa22.32■■□□□ 1.16
CCDC88B-207ENST00000479965 SURF6O75683 361 aaKnown RBP22.32■■□□□ 1.16
CCDC88B-207ENST00000479965 ATP8B2P98198 1209 aa22.32■■□□□ 1.16
CCDC88B-207ENST00000479965 CACTINQ8WUQ7 758 aaKnown RBP22.32■■□□□ 1.16
CCDC88B-207ENST00000479965 CPSF1Q10570 1443 aaKnown RBP22.32■■□□□ 1.16
CCDC88B-207ENST00000479965 PTPRMP28827 1452 aa22.31■■□□□ 1.16
CCDC88B-207ENST00000479965 GNAI3P08754 354 aa22.31■■□□□ 1.16
CCDC88B-207ENST00000479965 KRT85P78386 507 aa22.31■■□□□ 1.16
CCDC88B-207ENST00000479965 LARP1BQ659C4 914 aaKnown RBP22.31■■□□□ 1.16
CCDC88B-207ENST00000479965 PDRG1Q9NUG6 133 aa22.31■■□□□ 1.16
CCDC88B-207ENST00000479965 KRT222Q8N1A0 295 aa22.31■■□□□ 1.16
CCDC88B-207ENST00000479965 CHD1O14646 1710 aa22.31■■□□□ 1.16
CCDC88B-207ENST00000479965 FOXO3O43524 673 aa22.31■■□□□ 1.16
CCDC88B-207ENST00000479965 STAP2Q9UGK3 403 aa22.31■■□□□ 1.16
CCDC88B-207ENST00000479965 ZNF75DP51815 510 aa22.3■■□□□ 1.16
CCDC88B-207ENST00000479965 DNAJC25Q9H1X3 360 aa22.3■■□□□ 1.16
CCDC88B-207ENST00000479965 TRMT1Q9NXH9 659 aaKnown RBP22.3■■□□□ 1.16
CCDC88B-207ENST00000479965 ANKRD26Q9UPS8 1709 aa22.3■■□□□ 1.16
CCDC88B-207ENST00000479965 MAP2P11137 1827 aaKnown RBP22.3■■□□□ 1.16
CCDC88B-207ENST00000479965 TERF2Q15554 542 aa22.3■■□□□ 1.16
CCDC88B-207ENST00000479965 ZNF215Q9UL58 517 aaPredicted RBP22.3■■□□□ 1.16
CCDC88B-207ENST00000479965 PRPF40BQ6NWY9 871 aaKnown RBP22.29■■□□□ 1.16
CCDC88B-207ENST00000479965 NEXMIFQ5QGS0 1516 aa22.29■■□□□ 1.16
CCDC88B-207ENST00000479965 ADCK5Q3MIX3 580 aa22.29■■□□□ 1.16
CCDC88B-207ENST00000479965 TRERF1Q96PN7 1200 aa22.29■■□□□ 1.16
CCDC88B-207ENST00000479965 HYPKQ9NX55 129 aa22.29■■□□□ 1.16
CCDC88B-207ENST00000479965 ARAP3Q8WWN8 1544 aa22.29■■□□□ 1.16
CCDC88B-207ENST00000479965 ZNF165P49910 485 aa22.29■■□□□ 1.16
CCDC88B-207ENST00000479965 EIF4A2Q14240 407 aaKnown RBP22.29■■□□□ 1.16
CCDC88B-207ENST00000479965 ARID5BQ14865 1188 aa22.29■■□□□ 1.16
CCDC88B-207ENST00000479965 KMT5BQ4FZB7 885 aa22.29■■□□□ 1.16
CCDC88B-207ENST00000479965 LSG1Q9H089 658 aaKnown RBP22.29■■□□□ 1.16
CCDC88B-207ENST00000479965 ST7Q9NRC1 585 aa22.29■■□□□ 1.16
CCDC88B-207ENST00000479965 MORC2Q9Y6X9 1032 aaPredicted RBP22.29■■□□□ 1.16
CCDC88B-207ENST00000479965 CCDC66A2RUB6 948 aa22.28■■□□□ 1.16
CCDC88B-207ENST00000479965 CCDC144BQ3MJ40 725 aa22.28■■□□□ 1.16
CCDC88B-207ENST00000479965 CCDC144CPQ8IYA2 1237 aa22.28■■□□□ 1.16
CCDC88B-207ENST00000479965 CDC37L1Q7L3B6 337 aa22.28■■□□□ 1.16
CCDC88B-207ENST00000479965 POGZQ7Z3K3 1410 aa22.28■■□□□ 1.16
CCDC88B-207ENST00000479965 USP27XA6NNY8 438 aa22.27■■□□□ 1.16
CCDC88B-207ENST00000479965 FLIIQ13045 1269 aa22.27■■□□□ 1.16
CCDC88B-207ENST00000479965 SYCP1Q15431 976 aa22.27■■□□□ 1.16
CCDC88B-207ENST00000479965 BICD2Q8TD16 824 aa22.27■■□□□ 1.16
CCDC88B-207ENST00000479965 CNTROBQ8N137 903 aa22.27■■□□□ 1.16
CCDC88B-207ENST00000479965 ELF2Q15723 593 aa22.26■■□□□ 1.15
CCDC88B-207ENST00000479965 NAP1L2Q9ULW6 460 aaPredicted RBP22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms