RNA–Protein interactions for RNA: ENST00000479602.5

DDX56-211, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 440 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-211ENST00000479602 PARP3Q9Y6F1 533 aa11.82□□□□□ -0.52
DDX56-211ENST00000479602 SOS1Q07889 1333 aaPredicted RBP11.82□□□□□ -0.52
DDX56-211ENST00000479602 HTATSF1O43719 755 aaKnown RBP11.81□□□□□ -0.52
DDX56-211ENST00000479602 SLC39A6Q13433 755 aa11.81□□□□□ -0.52
DDX56-211ENST00000479602 IL17REQ8NFR9 667 aa11.81□□□□□ -0.52
DDX56-211ENST00000479602 NARFQ9UHQ1 456 aa11.81□□□□□ -0.52
DDX56-211ENST00000479602 SCN11AQ9UI33 1791 aa11.81□□□□□ -0.52
DDX56-211ENST00000479602 CEMIPQ8WUJ3 1361 aa11.8□□□□□ -0.52
DDX56-211ENST00000479602 HMOX1P09601 288 aa11.8□□□□□ -0.52
DDX56-211ENST00000479602 GAS2L2Q8NHY3 880 aa11.8□□□□□ -0.52
DDX56-211ENST00000479602 PIM2Q9P1W9 311 aa11.8□□□□□ -0.52
DDX56-211ENST00000479602 BCS1LQ9Y276 419 aa11.8□□□□□ -0.52
DDX56-211ENST00000479602 EIF5P55010 431 aaKnown RBP11.79□□□□□ -0.52
DDX56-211ENST00000479602 DNAJC5GQ8N7S2 189 aa11.79□□□□□ -0.52
DDX56-211ENST00000479602 MRS2Q9HD23 443 aa11.79□□□□□ -0.52
DDX56-211ENST00000479602 C4AP0C0L4 1744 aa11.79□□□□□ -0.52
DDX56-211ENST00000479602 SIPA1L3O60292 1781 aaPredicted RBP11.79□□□□□ -0.52
DDX56-211ENST00000479602 KCPQ6ZWJ8 1503 aa11.78□□□□□ -0.52
DDX56-211ENST00000479602 U2AF1L5P0DN76 240 aaPredicted RBP11.78□□□□□ -0.52
DDX56-211ENST00000479602 U2AF1Q01081 240 aaKnown RBP eCLIP11.78□□□□□ -0.52
DDX56-211ENST00000479602 NFIXQ14938 502 aa11.78□□□□□ -0.52
DDX56-211ENST00000479602 WDR43Q15061 677 aaKnown RBP eCLIP11.78□□□□□ -0.52
DDX56-211ENST00000479602 USPL1Q5W0Q7 1092 aa11.78□□□□□ -0.52
DDX56-211ENST00000479602 ARHGAP27Q6ZUM4 889 aa11.78□□□□□ -0.52
DDX56-211ENST00000479602 ZBTB1Q9Y2K1 713 aa11.78□□□□□ -0.52
DDX56-211ENST00000479602 VIRMAQ69YN4 1812 aaKnown RBP11.78□□□□□ -0.52
DDX56-211ENST00000479602 TOMM70O94826 608 aa11.77□□□□□ -0.53
DDX56-211ENST00000479602 CHRNA5P30532 468 aa11.77□□□□□ -0.53
DDX56-211ENST00000479602 DALRD3Q5D0E6 543 aaKnown RBP11.77□□□□□ -0.53
DDX56-211ENST00000479602 ZNF526Q8TF50 670 aaPredicted RBP11.77□□□□□ -0.53
DDX56-211ENST00000479602 DLG5Q8TDM6 1919 aa11.77□□□□□ -0.53
DDX56-211ENST00000479602 TJP1Q07157 1748 aa11.77□□□□□ -0.53
DDX56-211ENST00000479602 U2SURPO15042 1029 aaKnown RBP11.76□□□□□ -0.53
DDX56-211ENST00000479602 PRKAR2BP31323 418 aa11.76□□□□□ -0.53
DDX56-211ENST00000479602 CCDC27Q2M243 656 aa11.76□□□□□ -0.53
DDX56-211ENST00000479602 C9orf131Q5VYM1 1079 aa11.76□□□□□ -0.53
DDX56-211ENST00000479602 RUNDC1Q96C34 613 aa11.76□□□□□ -0.53
DDX56-211ENST00000479602 PHACTR3Q96KR7 559 aa11.76□□□□□ -0.53
DDX56-211ENST00000479602 BRCA1P38398 1863 aaKnown RBP11.76□□□□□ -0.53
DDX56-211ENST00000479602 PCNTO95613 3336 aa11.76□□□□□ -0.53
DDX56-211ENST00000479602 ZPR1O75312 459 aa11.75□□□□□ -0.53
DDX56-211ENST00000479602 PRELPP51888 382 aa11.75□□□□□ -0.53
DDX56-211ENST00000479602 ZNF790Q6PG37 636 aa11.75□□□□□ -0.53
DDX56-211ENST00000479602 ZNF496Q96IT1 587 aaPredicted RBP11.75□□□□□ -0.53
DDX56-211ENST00000479602 NMRK2Q9NPI5 230 aa11.75□□□□□ -0.53
DDX56-211ENST00000479602 ADAMTS8Q9UP79 889 aa11.75□□□□□ -0.53
DDX56-211ENST00000479602 N4BP2Q86UW6 1770 aaPredicted RBP11.74□□□□□ -0.53
DDX56-211ENST00000479602 GNAT3A8MTJ3 354 aa11.74□□□□□ -0.53
DDX56-211ENST00000479602 SERPINB2P05120 415 aa11.74□□□□□ -0.53
DDX56-211ENST00000479602 NEFMP07197 916 aa11.74□□□□□ -0.53
DDX56-211ENST00000479602 LMOD3Q0VAK6 560 aa11.74□□□□□ -0.53
DDX56-211ENST00000479602 NFE2L2Q16236 605 aa11.74□□□□□ -0.53
DDX56-211ENST00000479602 CCDC184Q52MB2 194 aa11.74□□□□□ -0.53
DDX56-211ENST00000479602 BABAM1Q9NWV8 329 aa11.74□□□□□ -0.53
DDX56-211ENST00000479602 UBR2Q8IWV8 1755 aa11.74□□□□□ -0.53
DDX56-211ENST00000479602 COL15A1P39059 1388 aa11.73□□□□□ -0.53
DDX56-211ENST00000479602 IFFO2Q5TF58 517 aa11.73□□□□□ -0.53
DDX56-211ENST00000479602 TEX13AQ9BXU3 409 aaPredicted RBP11.73□□□□□ -0.53
DDX56-211ENST00000479602 MAPK8IP3Q9UPT6 1336 aa11.73□□□□□ -0.53
DDX56-211ENST00000479602 HEG1Q9ULI3 1381 aa11.72□□□□□ -0.53
DDX56-211ENST00000479602 STARD3NLO95772 234 aa11.72□□□□□ -0.53
DDX56-211ENST00000479602 IL6STP40189 918 aaPredicted RBP11.72□□□□□ -0.53
DDX56-211ENST00000479602 RBM46Q8TBY0 533 aaKnown RBP11.72□□□□□ -0.53
DDX56-211ENST00000479602 NRXN2Q9P2S2 1712 aa11.72□□□□□ -0.53
DDX56-211ENST00000479602 A0A087WZG4 1122 aa11.71□□□□□ -0.53
DDX56-211ENST00000479602 KCNQ3O43525 872 aa11.71□□□□□ -0.53
DDX56-211ENST00000479602 CANXP27824 592 aaKnown RBP11.71□□□□□ -0.53
DDX56-211ENST00000479602 APLP1P51693 650 aa11.71□□□□□ -0.53
DDX56-211ENST00000479602 MIER1Q8N108 512 aa11.71□□□□□ -0.53
DDX56-211ENST00000479602 ARFGEF1Q9Y6D6 1849 aa11.71□□□□□ -0.54
DDX56-211ENST00000479602 KDM3BQ7LBC6 1761 aa11.71□□□□□ -0.54
DDX56-211ENST00000479602 ZC3H4Q9UPT8 1303 aaKnown RBP11.7□□□□□ -0.54
DDX56-211ENST00000479602 TMPOP42166 694 aaKnown RBP11.7□□□□□ -0.54
DDX56-211ENST00000479602 TBC1D9BQ66K14 1250 aa11.7□□□□□ -0.54
DDX56-211ENST00000479602 BRIP1Q9BX63 1249 aa11.7□□□□□ -0.54
DDX56-211ENST00000479602 CARMIL3Q8ND23 1372 aa11.69□□□□□ -0.54
DDX56-211ENST00000479602 IL16Q14005 1332 aa11.69□□□□□ -0.54
DDX56-211ENST00000479602 KLRG2A4D1S0 409 aaPredicted RBP11.69□□□□□ -0.54
DDX56-211ENST00000479602 POTECB2RU33 542 aa11.69□□□□□ -0.54
DDX56-211ENST00000479602 NFKBIEO00221 500 aa11.69□□□□□ -0.54
DDX56-211ENST00000479602 CAMTA2O94983 1202 aa11.69□□□□□ -0.54
DDX56-211ENST00000479602 A1BGP04217 495 aa11.69□□□□□ -0.54
DDX56-211ENST00000479602 FSTL1Q12841 308 aa11.69□□□□□ -0.54
DDX56-211ENST00000479602 CNGB1Q14028 1251 aaPredicted RBP11.69□□□□□ -0.54
DDX56-211ENST00000479602 TTLL6Q8N841 843 aa11.69□□□□□ -0.54
DDX56-211ENST00000479602 USP16Q9Y5T5 823 aa11.69□□□□□ -0.54
DDX56-211ENST00000479602 ZNF521Q96K83 1311 aa11.68□□□□□ -0.54
DDX56-211ENST00000479602 RGL2O15211 777 aa11.68□□□□□ -0.54
DDX56-211ENST00000479602 LMNB1P20700 586 aa11.68□□□□□ -0.54
DDX56-211ENST00000479602 CALD1Q05682 793 aaKnown RBP11.68□□□□□ -0.54
DDX56-211ENST00000479602 TEFQ10587 303 aa11.68□□□□□ -0.54
DDX56-211ENST00000479602 PRR5LQ6MZQ0 368 aa11.68□□□□□ -0.54
DDX56-211ENST00000479602 TTC5Q8N0Z6 440 aa11.68□□□□□ -0.54
DDX56-211ENST00000479602 C7orf43Q8WVR3 580 aa11.68□□□□□ -0.54
DDX56-211ENST00000479602 FMNL2Q96PY5 1086 aa11.68□□□□□ -0.54
DDX56-211ENST00000479602 RRAGCQ9HB90 399 aa11.68□□□□□ -0.54
DDX56-211ENST00000479602 RNF181Q9P0P0 153 aa11.68□□□□□ -0.54
DDX56-211ENST00000479602 PDZRN3Q9UPQ7 1066 aa11.68□□□□□ -0.54
DDX56-211ENST00000479602 TBC1D2BQ9UPU7 963 aa11.68□□□□□ -0.54
DDX56-211ENST00000479602 GLTPD2A6NH11 291 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms