RNA–Protein interactions for RNA: ENST00000479525.6

ECHDC1-216, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5

Gene ECHDC1, Length 1,368 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-216ENST00000479525 TTC5Q8N0Z6 440 aa23.31■■□□□ 1.32
ECHDC1-216ENST00000479525 BCS1LQ9Y276 419 aa23.31■■□□□ 1.32
ECHDC1-216ENST00000479525 COL15A1P39059 1388 aa23.31■■□□□ 1.32
ECHDC1-216ENST00000479525 ZNF496Q96IT1 587 aaPredicted RBP23.3■■□□□ 1.32
ECHDC1-216ENST00000479525 ZNF330Q9Y3S2 320 aaPredicted RBP23.29■■□□□ 1.32
ECHDC1-216ENST00000479525 ZPR1O75312 459 aa23.28■■□□□ 1.32
ECHDC1-216ENST00000479525 DCTN1Q14203 1278 aa23.28■■□□□ 1.32
ECHDC1-216ENST00000479525 MCM10Q7L590 875 aa23.27■■□□□ 1.32
ECHDC1-216ENST00000479525 NUDCQ9Y266 331 aa23.27■■□□□ 1.32
ECHDC1-216ENST00000479525 ARFGEF1Q9Y6D6 1849 aa23.27■■□□□ 1.32
ECHDC1-216ENST00000479525 GIGYF1O75420 1035 aaPredicted RBP23.27■■□□□ 1.31
ECHDC1-216ENST00000479525 CHRNA5P30532 468 aa23.27■■□□□ 1.31
ECHDC1-216ENST00000479525 PIP4K2AP48426 406 aaPredicted RBP23.27■■□□□ 1.31
ECHDC1-216ENST00000479525 ZNF790Q6PG37 636 aa23.27■■□□□ 1.31
ECHDC1-216ENST00000479525 HEG1Q9ULI3 1381 aa23.26■■□□□ 1.31
ECHDC1-216ENST00000479525 POLRMTO00411 1230 aaKnown RBP23.26■■□□□ 1.31
ECHDC1-216ENST00000479525 C1QTNF8P60827 252 aa23.26■■□□□ 1.31
ECHDC1-216ENST00000479525 BCL2L12Q9HB09 334 aa23.26■■□□□ 1.31
ECHDC1-216ENST00000479525 PRAMEF22A3QJZ6 481 aa23.25■■□□□ 1.31
ECHDC1-216ENST00000479525 FCHSD2O94868 740 aa23.25■■□□□ 1.31
ECHDC1-216ENST00000479525 KCNA3P22001 575 aa23.25■■□□□ 1.31
ECHDC1-216ENST00000479525 TGFB2P61812 414 aa23.25■■□□□ 1.31
ECHDC1-216ENST00000479525 BICDL1Q6ZP65 573 aa23.25■■□□□ 1.31
ECHDC1-216ENST00000479525 SCN7AQ01118 1682 aa23.24■■□□□ 1.31
ECHDC1-216ENST00000479525 CEMIPQ8WUJ3 1361 aa23.24■■□□□ 1.31
ECHDC1-216ENST00000479525 BTBD11A6QL63 1104 aa23.24■■□□□ 1.31
ECHDC1-216ENST00000479525 TM4SF1P30408 202 aa23.24■■□□□ 1.31
ECHDC1-216ENST00000479525 NRXN2Q9P2S2 1712 aa23.23■■□□□ 1.31
ECHDC1-216ENST00000479525 ADCY9O60503 1353 aa23.23■■□□□ 1.31
ECHDC1-216ENST00000479525 A1BGP04217 495 aa23.23■■□□□ 1.31
ECHDC1-216ENST00000479525 NFIXQ14938 502 aa23.23■■□□□ 1.31
ECHDC1-216ENST00000479525 VSIG10Q8N0Z9 540 aa23.23■■□□□ 1.31
ECHDC1-216ENST00000479525 NARFQ9UHQ1 456 aa23.23■■□□□ 1.31
ECHDC1-216ENST00000479525 SENP3-EIF4A1A0A087X0R7 540 aa23.22■■□□□ 1.31
ECHDC1-216ENST00000479525 ARHGAP27Q6ZUM4 889 aa23.22■■□□□ 1.31
ECHDC1-216ENST00000479525 CACNA1SQ13698 1873 aa23.21■■□□□ 1.31
ECHDC1-216ENST00000479525 CARMIL3Q8ND23 1372 aa23.21■■□□□ 1.31
ECHDC1-216ENST00000479525 ANKRD31Q8N7Z5 1873 aa23.2■■□□□ 1.31
ECHDC1-216ENST00000479525 CCDC24Q8N4L8 307 aa23.2■■□□□ 1.3
ECHDC1-216ENST00000479525 FMNL2Q96PY5 1086 aa23.2■■□□□ 1.3
ECHDC1-216ENST00000479525 TBC1D2BQ9UPU7 963 aa23.2■■□□□ 1.3
ECHDC1-216ENST00000479525 BCORQ6W2J9 1755 aa23.19■■□□□ 1.3
ECHDC1-216ENST00000479525 STARD3NLO95772 234 aa23.19■■□□□ 1.3
ECHDC1-216ENST00000479525 MIS18AQ9NYP9 233 aa23.19■■□□□ 1.3
ECHDC1-216ENST00000479525 DLEC1Q9Y238 1755 aa23.19■■□□□ 1.3
ECHDC1-216ENST00000479525 EIF5P55010 431 aaKnown RBP23.18■■□□□ 1.3
ECHDC1-216ENST00000479525 RTF1Q92541 710 aaKnown RBP23.18■■□□□ 1.3
ECHDC1-216ENST00000479525 GPBP1L1Q9HC44 474 aaPredicted RBP23.18■■□□□ 1.3
ECHDC1-216ENST00000479525 USP16Q9Y5T5 823 aa23.18■■□□□ 1.3
ECHDC1-216ENST00000479525 SERPINB2P05120 415 aa23.17■■□□□ 1.3
ECHDC1-216ENST00000479525 SBF1O95248 1867 aa23.17■■□□□ 1.3
ECHDC1-216ENST00000479525 CCDC88AQ3V6T2 1871 aa23.17■■□□□ 1.3
ECHDC1-216ENST00000479525 TBC1D9BQ66K14 1250 aa23.16■■□□□ 1.3
ECHDC1-216ENST00000479525 COL11A2P13942 1736 aaPredicted RBP23.16■■□□□ 1.3
ECHDC1-216ENST00000479525 PIM2Q9P1W9 311 aa23.15■■□□□ 1.3
ECHDC1-216ENST00000479525 KDM3BQ7LBC6 1761 aa23.15■■□□□ 1.3
ECHDC1-216ENST00000479525 THUMPD2Q9BTF0 503 aaKnown RBP23.14■■□□□ 1.3
ECHDC1-216ENST00000479525 DDX10Q13206 875 aaKnown RBP23.14■■□□□ 1.29
ECHDC1-216ENST00000479525 DALRD3Q5D0E6 543 aaKnown RBP23.13■■□□□ 1.29
ECHDC1-216ENST00000479525 LAMB4A4D0S4 1761 aa23.13■■□□□ 1.29
ECHDC1-216ENST00000479525 TEX13AQ9BXU3 409 aaPredicted RBP23.11■■□□□ 1.29
ECHDC1-216ENST00000479525 A0A087WZG4 1122 aa23.1■■□□□ 1.29
ECHDC1-216ENST00000479525 IL6STP40189 918 aaPredicted RBP23.1■■□□□ 1.29
ECHDC1-216ENST00000479525 RASSF7Q02833 373 aa23.1■■□□□ 1.29
ECHDC1-216ENST00000479525 C9orf131Q5VYM1 1079 aa23.1■■□□□ 1.29
ECHDC1-216ENST00000479525 PLEKHF1Q96S99 279 aa23.1■■□□□ 1.29
ECHDC1-216ENST00000479525 CAMTA2O94983 1202 aa23.09■■□□□ 1.29
ECHDC1-216ENST00000479525 DZIP3Q86Y13 1208 aaKnown RBP23.08■■□□□ 1.29
ECHDC1-216ENST00000479525 C2CD5Q86YS7 1000 aa23.08■■□□□ 1.29
ECHDC1-216ENST00000479525 ZNF219Q9P2Y4 722 aaPredicted RBP23.08■■□□□ 1.29
ECHDC1-216ENST00000479525 NBPF26B4DH59 902 aa23.06■■□□□ 1.28
ECHDC1-216ENST00000479525 SNRPA1P09661 255 aaKnown RBP23.06■■□□□ 1.28
ECHDC1-216ENST00000479525 TAF7Q15545 349 aaPredicted RBP23.06■■□□□ 1.28
ECHDC1-216ENST00000479525 NBPF10Q6P3W6 841 aaKnown RBP23.06■■□□□ 1.28
ECHDC1-216ENST00000479525 NPM2Q86SE8 214 aaKnown RBP23.06■■□□□ 1.28
ECHDC1-216ENST00000479525 NBPF15Q8N660 670 aa23.06■■□□□ 1.28
ECHDC1-216ENST00000479525 KIF3CO14782 793 aa23.05■■□□□ 1.28
ECHDC1-216ENST00000479525 NEFMP07197 916 aa23.05■■□□□ 1.28
ECHDC1-216ENST00000479525 NFE2L2Q16236 605 aa23.05■■□□□ 1.28
ECHDC1-216ENST00000479525 PRR5LQ6MZQ0 368 aa23.05■■□□□ 1.28
ECHDC1-216ENST00000479525 NGEFQ8N5V2 710 aa23.05■■□□□ 1.28
ECHDC1-216ENST00000479525 NMRK2Q9NPI5 230 aa23.05■■□□□ 1.28
ECHDC1-216ENST00000479525 RNF181Q9P0P0 153 aa23.05■■□□□ 1.28
ECHDC1-216ENST00000479525 TIAM2Q8IVF5 1701 aa23.04■■□□□ 1.28
ECHDC1-216ENST00000479525 MAPK8IP3Q9UPT6 1336 aa23.04■■□□□ 1.28
ECHDC1-216ENST00000479525 FAM177BA6PVY3 158 aa23.03■■□□□ 1.28
ECHDC1-216ENST00000479525 HTATSF1O43719 755 aaKnown RBP23.03■■□□□ 1.28
ECHDC1-216ENST00000479525 ZNF622Q969S3 477 aaKnown RBP eCLIP23.03■■□□□ 1.281e-7■□□□□ 9.8
ECHDC1-216ENST00000479525 SLX4Q8IY92 1834 aa23.03■■□□□ 1.28
ECHDC1-216ENST00000479525 NPHP1O15259 732 aa23.02■■□□□ 1.28
ECHDC1-216ENST00000479525 PRELPP51888 382 aa23.02■■□□□ 1.28
ECHDC1-216ENST00000479525 CCDC146Q8IYE0 955 aa23.02■■□□□ 1.28
ECHDC1-216ENST00000479525 NUP98P52948 1817 aa23.02■■□□□ 1.28
ECHDC1-216ENST00000479525 CEP350Q5VT06 3117 aa23.02■■□□□ 1.28
ECHDC1-216ENST00000479525 H0YIN7 160 aa23.01■■□□□ 1.27
ECHDC1-216ENST00000479525 SETDB2Q96T68 719 aa23.01■■□□□ 1.27
ECHDC1-216ENST00000479525 RRP7AQ9Y3A4 280 aaKnown RBP23.01■■□□□ 1.27
ECHDC1-216ENST00000479525 TTLL6Q8N841 843 aa23.01■■□□□ 1.27
ECHDC1-216ENST00000479525 HLFQ16534 295 aa22.99■■□□□ 1.27
ECHDC1-216ENST00000479525 CNBD1Q8NA66 436 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms