RNA–Protein interactions for RNA: ENST00000477819.1

PTPRN-214, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 579 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-214ENST00000477819 MEGF6O75095 1541 aa10.84□□□□□ -0.67
PTPRN-214ENST00000477819 KIAA1551Q9HCM1 1747 aa10.84□□□□□ -0.67
PTPRN-214ENST00000477819 MMP10P09238 476 aa10.84□□□□□ -0.67
PTPRN-214ENST00000477819 MPRIPQ6WCQ1 1025 aa10.84□□□□□ -0.67
PTPRN-214ENST00000477819 IP6K1Q92551 441 aa10.84□□□□□ -0.67
PTPRN-214ENST00000477819 FAM205CA6NFA0 338 aa10.83□□□□□ -0.68
PTPRN-214ENST00000477819 FCHSD2O94868 740 aa10.83□□□□□ -0.68
PTPRN-214ENST00000477819 DPEP1P16444 411 aa10.83□□□□□ -0.68
PTPRN-214ENST00000477819 ZNF710Q8N1W2 664 aa10.83□□□□□ -0.68
PTPRN-214ENST00000477819 MON2Q7Z3U7 1717 aa10.83□□□□□ -0.68
PTPRN-214ENST00000477819 FAM208AQ9UK61 1670 aaKnown RBP10.82□□□□□ -0.68
PTPRN-214ENST00000477819 SBNO2Q9Y2G9 1366 aa10.82□□□□□ -0.68
PTPRN-214ENST00000477819 FBLN1P23142 703 aa10.82□□□□□ -0.68
PTPRN-214ENST00000477819 USHBP1Q8N6Y0 703 aa10.82□□□□□ -0.68
PTPRN-214ENST00000477819 SMC1BQ8NDV3 1235 aa10.82□□□□□ -0.68
PTPRN-214ENST00000477819 POTEB3A0JP26 581 aa10.81□□□□□ -0.68
PTPRN-214ENST00000477819 TGFB2P61812 414 aa10.81□□□□□ -0.68
PTPRN-214ENST00000477819 DOK7Q18PE1 504 aa10.81□□□□□ -0.68
PTPRN-214ENST00000477819 POTEBQ6S5H4 581 aa10.81□□□□□ -0.68
PTPRN-214ENST00000477819 LINC00116Q8NCU8 138 aa10.81□□□□□ -0.68
PTPRN-214ENST00000477819 HS3ST6Q96QI5 342 aa10.81□□□□□ -0.68
PTPRN-214ENST00000477819 KIF13BQ9NQT8 1826 aa10.81□□□□□ -0.68
PTPRN-214ENST00000477819 KDM2BQ8NHM5 1336 aa10.81□□□□□ -0.68
PTPRN-214ENST00000477819 PKD1L3Q7Z443 1732 aa10.81□□□□□ -0.68
PTPRN-214ENST00000477819 RNF181Q9P0P0 153 aa10.8□□□□□ -0.68
PTPRN-214ENST00000477819 PLEKHG2Q9H7P9 1386 aa10.79□□□□□ -0.68
PTPRN-214ENST00000477819 GNPATO15228 680 aa10.79□□□□□ -0.68
PTPRN-214ENST00000477819 KCNA3P22001 575 aa10.79□□□□□ -0.68
PTPRN-214ENST00000477819 SSFA2P28290 1259 aa10.79□□□□□ -0.68
PTPRN-214ENST00000477819 FAM161AQ3B820 660 aa10.79□□□□□ -0.68
PTPRN-214ENST00000477819 NBPF6Q5VWK0 638 aa10.79□□□□□ -0.68
PTPRN-214ENST00000477819 NBPF4Q96M43 638 aa10.79□□□□□ -0.68
PTPRN-214ENST00000477819 CD163L1Q9NR16 1453 aa10.79□□□□□ -0.68
PTPRN-214ENST00000477819 BRCA1P38398 1863 aaKnown RBP10.78□□□□□ -0.68
PTPRN-214ENST00000477819 HOXC9P31274 260 aa10.78□□□□□ -0.68
PTPRN-214ENST00000477819 TMC1Q8TDI8 760 aa10.78□□□□□ -0.68
PTPRN-214ENST00000477819 MAP3K19Q56UN5 1328 aa10.78□□□□□ -0.68
PTPRN-214ENST00000477819 ITGB4P16144 1822 aa10.77□□□□□ -0.68
PTPRN-214ENST00000477819 C10orf71Q711Q0 1435 aa10.77□□□□□ -0.68
PTPRN-214ENST00000477819 SBF1O95248 1867 aa10.77□□□□□ -0.69
PTPRN-214ENST00000477819 TNRC6CQ9HCJ0 1690 aaKnown RBP10.77□□□□□ -0.69
PTPRN-214ENST00000477819 FOXN1O15353 648 aa10.77□□□□□ -0.69
PTPRN-214ENST00000477819 HOXB1P14653 301 aaPredicted RBP10.77□□□□□ -0.69
PTPRN-214ENST00000477819 AMPHP49418 695 aa10.77□□□□□ -0.69
PTPRN-214ENST00000477819 ITPK1Q13572 414 aa10.77□□□□□ -0.69
PTPRN-214ENST00000477819 PIGBQ92521 554 aa10.77□□□□□ -0.69
PTPRN-214ENST00000477819 SMARCC1Q92922 1105 aaPredicted RBP10.77□□□□□ -0.69
PTPRN-214ENST00000477819 SLC12A5Q9H2X9 1139 aa10.77□□□□□ -0.69
PTPRN-214ENST00000477819 LOC102724428A0A0B4J2F2 783 aa10.76□□□□□ -0.69
PTPRN-214ENST00000477819 CYP27B1O15528 508 aa10.76□□□□□ -0.69
PTPRN-214ENST00000477819 HMGB2P26583 209 aaKnown RBP10.76□□□□□ -0.69
PTPRN-214ENST00000477819 SIK1P57059 783 aa10.76□□□□□ -0.69
PTPRN-214ENST00000477819 MKRN1Q9UHC7 482 aaKnown RBP10.76□□□□□ -0.69
PTPRN-214ENST00000477819 MAP2P11137 1827 aaKnown RBP10.76□□□□□ -0.69
PTPRN-214ENST00000477819 ARFGEF1Q9Y6D6 1849 aa10.76□□□□□ -0.69
PTPRN-214ENST00000477819 NSD3Q9BZ95 1437 aa10.75□□□□□ -0.69
PTPRN-214ENST00000477819 RIMBP2O15034 1052 aa10.75□□□□□ -0.69
PTPRN-214ENST00000477819 TMF1P82094 1093 aa10.75□□□□□ -0.69
PTPRN-214ENST00000477819 RAPGEF4Q8WZA2 1011 aa10.75□□□□□ -0.69
PTPRN-214ENST00000477819 DCAF5Q96JK2 942 aa10.75□□□□□ -0.69
PTPRN-214ENST00000477819 CCDC87Q9NVE4 849 aa10.75□□□□□ -0.69
PTPRN-214ENST00000477819 TATP17735 454 aaPredicted RBP10.74□□□□□ -0.69
PTPRN-214ENST00000477819 DALRD3Q5D0E6 543 aaKnown RBP10.74□□□□□ -0.69
PTPRN-214ENST00000477819 HDGFL2Q7Z4V5 671 aaPredicted RBP10.74□□□□□ -0.69
PTPRN-214ENST00000477819 PIM2Q9P1W9 311 aa10.74□□□□□ -0.69
PTPRN-214ENST00000477819 VEGFAP15692 232 aaPredicted RBP10.73□□□□□ -0.69
PTPRN-214ENST00000477819 CHRNA5P30532 468 aa10.73□□□□□ -0.69
PTPRN-214ENST00000477819 ATP6V1AP38606 617 aa10.73□□□□□ -0.69
PTPRN-214ENST00000477819 RASSF7Q02833 373 aa10.73□□□□□ -0.69
PTPRN-214ENST00000477819 NLGN1Q8N2Q7 840 aa10.73□□□□□ -0.69
PTPRN-214ENST00000477819 ASAP1Q9ULH1 1129 aa10.73□□□□□ -0.69
PTPRN-214ENST00000477819 CGNL1Q0VF96 1302 aa10.73□□□□□ -0.69
PTPRN-214ENST00000477819 PCDH11XQ9BZA7 1347 aa10.73□□□□□ -0.69
PTPRN-214ENST00000477819 PCDH11YQ9BZA8 1340 aa10.73□□□□□ -0.69
PTPRN-214ENST00000477819 EDC4Q6P2E9 1401 aaKnown RBP10.73□□□□□ -0.69
PTPRN-214ENST00000477819 C4AP0C0L4 1744 aa10.72□□□□□ -0.69
PTPRN-214ENST00000477819 PPP1R37O75864 691 aa10.72□□□□□ -0.69
PTPRN-214ENST00000477819 GYS1P13807 737 aa10.72□□□□□ -0.69
PTPRN-214ENST00000477819 RRS1Q15050 365 aaKnown RBP10.72□□□□□ -0.69
PTPRN-214ENST00000477819 TRAPPC3LQ5T215 181 aa10.72□□□□□ -0.69
PTPRN-214ENST00000477819 PRDM10Q9NQV6 1147 aa10.72□□□□□ -0.69
PTPRN-214ENST00000477819 PARP3Q9Y6F1 533 aa10.72□□□□□ -0.69
PTPRN-214ENST00000477819 PDE4DIPQ5VU43 2346 aa10.72□□□□□ -0.69
PTPRN-214ENST00000477819 A0A1W2PP64 1363 aa10.71□□□□□ -0.69
PTPRN-214ENST00000477819 POTECB2RU33 542 aa10.71□□□□□ -0.69
PTPRN-214ENST00000477819 ARHGEF1Q92888 912 aaKnown RBP10.71□□□□□ -0.69
PTPRN-214ENST00000477819 ABHD8Q96I13 439 aa10.71□□□□□ -0.69
PTPRN-214ENST00000477819 KRTAP3-3Q9BYR6 98 aa10.71□□□□□ -0.69
PTPRN-214ENST00000477819 KRTAP3-2Q9BYR7 98 aa10.71□□□□□ -0.69
PTPRN-214ENST00000477819 C2orf72A6NCS6 295 aa10.7□□□□□ -0.7
PTPRN-214ENST00000477819 GLTPD2A6NH11 291 aa10.7□□□□□ -0.7
PTPRN-214ENST00000477819 LBX1P52954 281 aa10.7□□□□□ -0.7
PTPRN-214ENST00000477819 SPNS2Q8IVW8 549 aa10.7□□□□□ -0.7
PTPRN-214ENST00000477819 HS6ST3Q8IZP7 471 aa10.7□□□□□ -0.7
PTPRN-214ENST00000477819 L3MBTL2Q969R5 705 aa10.7□□□□□ -0.7
PTPRN-214ENST00000477819 COG3Q96JB2 828 aa10.7□□□□□ -0.7
PTPRN-214ENST00000477819 RTCBQ9Y3I0 505 aaKnown RBP10.7□□□□□ -0.7
PTPRN-214ENST00000477819 CTCFP49711 727 aaPredicted RBP10.69□□□□□ -0.7
PTPRN-214ENST00000477819 HSP90AB2PQ58FF8 381 aa10.69□□□□□ -0.7
PTPRN-214ENST00000477819 SLC4A9Q96Q91 983 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms