RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 TAF7Q15545 349 aaPredicted RBP16■□□□□ 0.15
SYNE1-223ENST00000476519 MCM10Q7L590 875 aa16■□□□□ 0.15
SYNE1-223ENST00000476519 PLEKHF1Q96S99 279 aa16■□□□□ 0.15
SYNE1-223ENST00000476519 MYH14Q7Z406 1995 aaKnown RBP16■□□□□ 0.15
SYNE1-223ENST00000476519 COL5A3P25940 1745 aaPredicted RBP15.99■□□□□ 0.15
SYNE1-223ENST00000476519 IL6STP40189 918 aaPredicted RBP15.99■□□□□ 0.15
SYNE1-223ENST00000476519 CICQ96RK0 1608 aaPredicted RBP15.98■□□□□ 0.15
SYNE1-223ENST00000476519 A0A0G2JLW4 131 aa15.98■□□□□ 0.15
SYNE1-223ENST00000476519 KCNQ3O43525 872 aa15.98■□□□□ 0.15
SYNE1-223ENST00000476519 DDR1Q08345 913 aa15.98■□□□□ 0.15
SYNE1-223ENST00000476519 COL15A1P39059 1388 aa15.98■□□□□ 0.15
SYNE1-223ENST00000476519 C10orf71Q711Q0 1435 aa15.97■□□□□ 0.15
SYNE1-223ENST00000476519 POLRMTO00411 1230 aaKnown RBP15.97■□□□□ 0.15
SYNE1-223ENST00000476519 SNRPA1P09661 255 aaKnown RBP15.97■□□□□ 0.15
SYNE1-223ENST00000476519 DPEP1P16444 411 aa15.97■□□□□ 0.15
SYNE1-223ENST00000476519 DCTN1Q14203 1278 aa15.97■□□□□ 0.15
SYNE1-223ENST00000476519 NPM2Q86SE8 214 aaKnown RBP15.97■□□□□ 0.15
SYNE1-223ENST00000476519 PNISRQ8TF01 805 aaKnown RBP15.97■□□□□ 0.15
SYNE1-223ENST00000476519 NFIXQ14938 502 aa15.96■□□□□ 0.15
SYNE1-223ENST00000476519 NFE2L2Q16236 605 aa15.96■□□□□ 0.15
SYNE1-223ENST00000476519 BCL2L12Q9HB09 334 aa15.96■□□□□ 0.15
SYNE1-223ENST00000476519 TJP1Q07157 1748 aa15.95■□□□□ 0.14
SYNE1-223ENST00000476519 A1BGP04217 495 aa15.95■□□□□ 0.14
SYNE1-223ENST00000476519 KCNA3P22001 575 aa15.95■□□□□ 0.14
SYNE1-223ENST00000476519 PIM2Q9P1W9 311 aa15.95■□□□□ 0.14
SYNE1-223ENST00000476519 USP16Q9Y5T5 823 aa15.95■□□□□ 0.14
SYNE1-223ENST00000476519 MAPK8IP3Q9UPT6 1336 aa15.94■□□□□ 0.14
SYNE1-223ENST00000476519 WWC3Q9ULE0 1092 aa15.94■□□□□ 0.14
SYNE1-223ENST00000476519 BCS1LQ9Y276 419 aa15.94■□□□□ 0.14
SYNE1-223ENST00000476519 PXDNLA1KZ92 1463 aa15.94■□□□□ 0.14
SYNE1-223ENST00000476519 MYBBP1AQ9BQG0 1328 aaKnown RBP15.94■□□□□ 0.14
SYNE1-223ENST00000476519 SERPINB2P05120 415 aa15.93■□□□□ 0.14
SYNE1-223ENST00000476519 ZEB1P37275 1124 aaPredicted RBP15.93■□□□□ 0.14
SYNE1-223ENST00000476519 TBC1D2BQ9UPU7 963 aa15.93■□□□□ 0.14
SYNE1-223ENST00000476519 DALRD3Q5D0E6 543 aaKnown RBP15.92■□□□□ 0.14
SYNE1-223ENST00000476519 MIS18AQ9NYP9 233 aa15.92■□□□□ 0.14
SYNE1-223ENST00000476519 CHD4Q14839 1912 aa15.92■□□□□ 0.14
SYNE1-223ENST00000476519 ZNF330Q9Y3S2 320 aaPredicted RBP15.91■□□□□ 0.14
SYNE1-223ENST00000476519 C4AP0C0L4 1744 aa15.91■□□□□ 0.14
SYNE1-223ENST00000476519 PRAMEF22A3QJZ6 481 aa15.9■□□□□ 0.14
SYNE1-223ENST00000476519 RGL2O15211 777 aa15.9■□□□□ 0.14
SYNE1-223ENST00000476519 CLEC4GQ6UXB4 293 aa15.9■□□□□ 0.14
SYNE1-223ENST00000476519 ARHGAP27Q6ZUM4 889 aa15.9■□□□□ 0.14
SYNE1-223ENST00000476519 UBR2Q8IWV8 1755 aa15.9■□□□□ 0.14
SYNE1-223ENST00000476519 CAMTA2O94983 1202 aa15.89■□□□□ 0.13
SYNE1-223ENST00000476519 CHRNA5P30532 468 aa15.89■□□□□ 0.13
SYNE1-223ENST00000476519 RIPK4P57078 832 aa15.89■□□□□ 0.13
SYNE1-223ENST00000476519 TBC1D9BQ66K14 1250 aa15.89■□□□□ 0.13
SYNE1-223ENST00000476519 BICDL1Q6ZP65 573 aa15.89■□□□□ 0.13
SYNE1-223ENST00000476519 DZIP3Q86Y13 1208 aaKnown RBP15.89■□□□□ 0.13
SYNE1-223ENST00000476519 SETDB2Q96T68 719 aa15.89■□□□□ 0.13
SYNE1-223ENST00000476519 BABAM1Q9NWV8 329 aa15.89■□□□□ 0.13
SYNE1-223ENST00000476519 PDZRN3Q9UPQ7 1066 aa15.89■□□□□ 0.13
SYNE1-223ENST00000476519 GIGYF1O75420 1035 aaPredicted RBP15.88■□□□□ 0.13
SYNE1-223ENST00000476519 EIF4A1P60842 406 aaKnown RBP15.88■□□□□ 0.13
SYNE1-223ENST00000476519 LMOD3Q0VAK6 560 aa15.88■□□□□ 0.13
SYNE1-223ENST00000476519 PRKRIP1Q9H875 184 aaPredicted RBP15.88■□□□□ 0.13
SYNE1-223ENST00000476519 NBPF26B4DH59 902 aa15.87■□□□□ 0.13
SYNE1-223ENST00000476519 H0YIN7 160 aa15.87■□□□□ 0.13
SYNE1-223ENST00000476519 TMPOP42166 694 aaKnown RBP15.87■□□□□ 0.13
SYNE1-223ENST00000476519 NBPF10Q6P3W6 841 aaKnown RBP15.87■□□□□ 0.13
SYNE1-223ENST00000476519 NBPF15Q8N660 670 aa15.87■□□□□ 0.13
SYNE1-223ENST00000476519 THUMPD2Q9BTF0 503 aaKnown RBP15.87■□□□□ 0.13
SYNE1-223ENST00000476519 BRIP1Q9BX63 1249 aa15.87■□□□□ 0.13
SYNE1-223ENST00000476519 ZNF652Q9Y2D9 606 aa15.87■□□□□ 0.13
SYNE1-223ENST00000476519 SIPA1L3O60292 1781 aaPredicted RBP15.87■□□□□ 0.13
SYNE1-223ENST00000476519 PDE6BP35913 854 aa15.86■□□□□ 0.13
SYNE1-223ENST00000476519 C1QTNF8P60827 252 aa15.86■□□□□ 0.13
SYNE1-223ENST00000476519 WDR43Q15061 677 aaKnown RBP eCLIP15.86■□□□□ 0.13
SYNE1-223ENST00000476519 GPBP1L1Q9HC44 474 aaPredicted RBP15.86■□□□□ 0.13
SYNE1-223ENST00000476519 KIF13BQ9NQT8 1826 aa15.86■□□□□ 0.13
SYNE1-223ENST00000476519 ATP10DQ9P241 1426 aa15.85■□□□□ 0.13
SYNE1-223ENST00000476519 PIP4K2AP48426 406 aaPredicted RBP15.85■□□□□ 0.13
SYNE1-223ENST00000476519 C2CD5Q86YS7 1000 aa15.85■□□□□ 0.13
SYNE1-223ENST00000476519 TTLL6Q8N841 843 aa15.85■□□□□ 0.13
SYNE1-223ENST00000476519 RUNDC1Q96C34 613 aa15.85■□□□□ 0.13
SYNE1-223ENST00000476519 ADCY9O60503 1353 aa15.85■□□□□ 0.13
SYNE1-223ENST00000476519 CARMIL3Q8ND23 1372 aa15.85■□□□□ 0.13
SYNE1-223ENST00000476519 VIRMAQ69YN4 1812 aaKnown RBP15.84■□□□□ 0.13
SYNE1-223ENST00000476519 PRR5LQ6MZQ0 368 aa15.84■□□□□ 0.13
SYNE1-223ENST00000476519 TSPYL4Q9UJ04 414 aa15.84■□□□□ 0.13
SYNE1-223ENST00000476519 ADAMTS8Q9UP79 889 aa15.84■□□□□ 0.13
SYNE1-223ENST00000476519 ERVV-1B6SEH8 477 aa15.82■□□□□ 0.12
SYNE1-223ENST00000476519 NPHP1O15259 732 aa15.82■□□□□ 0.12
SYNE1-223ENST00000476519 ST5P78524 1137 aa15.82■□□□□ 0.12
SYNE1-223ENST00000476519 TPTE2Q6XPS3 522 aa15.82■□□□□ 0.12
SYNE1-223ENST00000476519 CNBD1Q8NA66 436 aa15.82■□□□□ 0.12
SYNE1-223ENST00000476519 ERBB4Q15303 1308 aa15.81■□□□□ 0.12
SYNE1-223ENST00000476519 NBPF5PQ86XG9 351 aaPredicted RBP15.81■□□□□ 0.12
SYNE1-223ENST00000476519 CCDC146Q8IYE0 955 aa15.81■□□□□ 0.12
SYNE1-223ENST00000476519 KIAA1551Q9HCM1 1747 aa15.8■□□□□ 0.12
SYNE1-223ENST00000476519 CHL1O00533 1208 aa15.8■□□□□ 0.12
SYNE1-223ENST00000476519 NEUROD2Q15784 382 aa15.8■□□□□ 0.12
SYNE1-223ENST00000476519 C9orf131Q5VYM1 1079 aa15.8■□□□□ 0.12
SYNE1-223ENST00000476519 NIP7Q9Y221 180 aaKnown RBP eCLIP15.8■□□□□ 0.12
SYNE1-223ENST00000476519 RRP7AQ9Y3A4 280 aaKnown RBP15.8■□□□□ 0.12
SYNE1-223ENST00000476519 ZNF526Q8TF50 670 aaPredicted RBP15.79■□□□□ 0.12
SYNE1-223ENST00000476519 CNKSR1Q969H4 720 aa15.79■□□□□ 0.12
SYNE1-223ENST00000476519 ZNF622Q969S3 477 aaKnown RBP eCLIP15.79■□□□□ 0.12
SYNE1-223ENST00000476519 TRIM35Q9UPQ4 493 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms