RNA–Protein interactions for RNA: ENST00000476135.5

HDAC9-223, Transcript of histone deacetylase 9, human

TSL 5

Gene HDAC9, Length 1,115 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-223	ENST00000476135	KIF13B	Q9NQT8	1826 aa		10.49	□□□□□ -0.73
HDAC9-223	ENST00000476135	TNRC6C	Q9HCJ0	1690 aa	Known RBP	10.48	□□□□□ -0.73
HDAC9-223	ENST00000476135	PKD1L3	Q7Z443	1732 aa		10.48	□□□□□ -0.73
HDAC9-223	ENST00000476135	NUDT7	P0C024	238 aa		10.48	□□□□□ -0.73
HDAC9-223	ENST00000476135	NKX1-1	Q15270	411 aa	Predicted RBP	10.48	□□□□□ -0.73
HDAC9-223	ENST00000476135	ARHGAP27	Q6ZUM4	889 aa		10.48	□□□□□ -0.73
HDAC9-223	ENST00000476135	PCDHGA4	Q9Y5G9	962 aa		10.48	□□□□□ -0.73
HDAC9-223	ENST00000476135	KIAA1551	Q9HCM1	1747 aa		10.47	□□□□□ -0.73
HDAC9-223	ENST00000476135	ANKRD24	Q8TF21	1146 aa		10.47	□□□□□ -0.73
HDAC9-223	ENST00000476135	PXDNL	A1KZ92	1463 aa		10.47	□□□□□ -0.73
HDAC9-223	ENST00000476135	KIAA1210	Q9ULL0	1709 aa		10.47	□□□□□ -0.73
HDAC9-223	ENST00000476135	LTN1	O94822	1766 aa		10.47	□□□□□ -0.73
HDAC9-223	ENST00000476135	TGFB2	P61812	414 aa		10.46	□□□□□ -0.73
HDAC9-223	ENST00000476135	FAM161A	Q3B820	660 aa		10.46	□□□□□ -0.73
HDAC9-223	ENST00000476135	C9orf131	Q5VYM1	1079 aa		10.46	□□□□□ -0.73
HDAC9-223	ENST00000476135	RRAGC	Q9HB90	399 aa		10.46	□□□□□ -0.73
HDAC9-223	ENST00000476135	PRDM10	Q9NQV6	1147 aa		10.46	□□□□□ -0.73
HDAC9-223	ENST00000476135	BCS1L	Q9Y276	419 aa		10.46	□□□□□ -0.73
HDAC9-223	ENST00000476135	KCP	Q6ZWJ8	1503 aa		10.46	□□□□□ -0.74
HDAC9-223	ENST00000476135	N4BP2	Q86UW6	1770 aa	Predicted RBP	10.46	□□□□□ -0.74
HDAC9-223	ENST00000476135	UBR3	Q6ZT12	1888 aa		10.45	□□□□□ -0.74
HDAC9-223	ENST00000476135	C4B	P0C0L5	1744 aa		10.45	□□□□□ -0.74
HDAC9-223	ENST00000476135	TOGARAM1	Q9Y4F4	1720 aa		10.45	□□□□□ -0.74
HDAC9-223	ENST00000476135	FAM208A	Q9UK61	1670 aa	Known RBP	10.45	□□□□□ -0.74
HDAC9-223	ENST00000476135	NSD3	Q9BZ95	1437 aa		10.45	□□□□□ -0.74
HDAC9-223	ENST00000476135	CENPJ	Q9HC77	1338 aa	Predicted RBP	10.45	□□□□□ -0.74
HDAC9-223	ENST00000476135	BRCA1	P38398	1863 aa	Known RBP	10.44	□□□□□ -0.74
HDAC9-223	ENST00000476135	ARFGEF1	Q9Y6D6	1849 aa		10.44	□□□□□ -0.74
HDAC9-223	ENST00000476135	USP31	Q70CQ4	1352 aa		10.43	□□□□□ -0.74
HDAC9-223	ENST00000476135	ZCRB1	Q8TBF4	217 aa	Known RBP	10.43	□□□□□ -0.74
HDAC9-223	ENST00000476135	AK7	Q96M32	723 aa		10.43	□□□□□ -0.74
HDAC9-223	ENST00000476135	GPHN	Q9NQX3	736 aa	Predicted RBP	10.43	□□□□□ -0.74
HDAC9-223	ENST00000476135	LHX6	Q9UPM6	363 aa		10.43	□□□□□ -0.74
HDAC9-223	ENST00000476135	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	10.42	□□□□□ -0.74
HDAC9-223	ENST00000476135		A0A0G2JLW4	131 aa		10.42	□□□□□ -0.74
HDAC9-223	ENST00000476135	FCHSD2	O94868	740 aa		10.42	□□□□□ -0.74
HDAC9-223	ENST00000476135	SSFA2	P28290	1259 aa		10.42	□□□□□ -0.74
HDAC9-223	ENST00000476135	FOXK1	P85037	733 aa		10.42	□□□□□ -0.74
HDAC9-223	ENST00000476135	AMIGO3	Q86WK7	504 aa		10.42	□□□□□ -0.74
HDAC9-223	ENST00000476135	FOXN1	O15353	648 aa		10.41	□□□□□ -0.74
HDAC9-223	ENST00000476135	MLLT1	Q03111	559 aa	Predicted RBP	10.41	□□□□□ -0.74
HDAC9-223	ENST00000476135	PLPP6	Q8IY26	295 aa		10.41	□□□□□ -0.74
HDAC9-223	ENST00000476135	PALLD	Q8WX93	1383 aa		10.4	□□□□□ -0.74
HDAC9-223	ENST00000476135	PHF14	O94880	888 aa		10.4	□□□□□ -0.74
HDAC9-223	ENST00000476135	RNF181	Q9P0P0	153 aa		10.4	□□□□□ -0.74
HDAC9-223	ENST00000476135	SBF1	O95248	1867 aa		10.4	□□□□□ -0.75
HDAC9-223	ENST00000476135	KTN1	Q86UP2	1357 aa	Known RBP	10.39	□□□□□ -0.75
HDAC9-223	ENST00000476135	EVC2	Q86UK5	1308 aa		10.39	□□□□□ -0.75
HDAC9-223	ENST00000476135	MON2	Q7Z3U7	1717 aa		10.39	□□□□□ -0.75
HDAC9-223	ENST00000476135	MMP10	P09238	476 aa		10.39	□□□□□ -0.75
HDAC9-223	ENST00000476135	DPEP1	P16444	411 aa		10.39	□□□□□ -0.75
HDAC9-223	ENST00000476135	CTCF	P49711	727 aa	Predicted RBP	10.39	□□□□□ -0.75
HDAC9-223	ENST00000476135	RGS19	P49795	217 aa		10.39	□□□□□ -0.75
HDAC9-223	ENST00000476135	DSG2	Q14126	1118 aa		10.39	□□□□□ -0.75
HDAC9-223	ENST00000476135	PTCD2	Q8WV60	388 aa	Known RBP	10.39	□□□□□ -0.75
HDAC9-223	ENST00000476135	ABHD8	Q96I13	439 aa		10.39	□□□□□ -0.75
HDAC9-223	ENST00000476135	ZC3H4	Q9UPT8	1303 aa	Known RBP	10.38	□□□□□ -0.75
HDAC9-223	ENST00000476135	VEGFA	P15692	232 aa	Predicted RBP	10.38	□□□□□ -0.75
HDAC9-223	ENST00000476135	NBPF1	Q3BBV0	1214 aa		10.38	□□□□□ -0.75
HDAC9-223	ENST00000476135	SMIM5	Q71RC9	77 aa		10.38	□□□□□ -0.75
HDAC9-223	ENST00000476135	IP6K1	Q92551	441 aa		10.38	□□□□□ -0.75
HDAC9-223	ENST00000476135	SMARCC1	Q92922	1105 aa	Predicted RBP	10.38	□□□□□ -0.75
HDAC9-223	ENST00000476135	DCAF5	Q96JK2	942 aa		10.38	□□□□□ -0.75
HDAC9-223	ENST00000476135	RYDEN	Q9NUL5	291 aa	Known RBP	10.38	□□□□□ -0.75
HDAC9-223	ENST00000476135	KCNA3	P22001	575 aa		10.37	□□□□□ -0.75
HDAC9-223	ENST00000476135	ANKRD13D	Q6ZTN6	518 aa		10.37	□□□□□ -0.75
HDAC9-223	ENST00000476135	AIDA	Q96BJ3	306 aa		10.37	□□□□□ -0.75
HDAC9-223	ENST00000476135	CCDC87	Q9NVE4	849 aa		10.37	□□□□□ -0.75
HDAC9-223	ENST00000476135	CGNL1	Q0VF96	1302 aa		10.36	□□□□□ -0.75
HDAC9-223	ENST00000476135	POTEE	Q6S8J3	1075 aa		10.36	□□□□□ -0.75
HDAC9-223	ENST00000476135	RNF166	Q96A37	237 aa	Predicted RBP	10.36	□□□□□ -0.75
HDAC9-223	ENST00000476135	PIM2	Q9P1W9	311 aa		10.36	□□□□□ -0.75
HDAC9-223	ENST00000476135	MKRN1	Q9UHC7	482 aa	Known RBP	10.36	□□□□□ -0.75
HDAC9-223	ENST00000476135	MEGF6	O75095	1541 aa		10.36	□□□□□ -0.75
HDAC9-223	ENST00000476135	MAP2	P11137	1827 aa	Known RBP	10.35	□□□□□ -0.75
HDAC9-223	ENST00000476135	RGPD2	P0DJD1	1756 aa		10.35	□□□□□ -0.75
HDAC9-223	ENST00000476135	LSM11	P83369	360 aa	Known RBP eCLIP	10.35	□□□□□ -0.75
HDAC9-223	ENST00000476135	NME9	Q86XW9	330 aa		10.35	□□□□□ -0.75
HDAC9-223	ENST00000476135	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	10.35	□□□□□ -0.75
HDAC9-223	ENST00000476135	NLGN1	Q8N2Q7	840 aa		10.35	□□□□□ -0.75
HDAC9-223	ENST00000476135	LTV1	Q96GA3	475 aa	Predicted RBP	10.35	□□□□□ -0.75
HDAC9-223	ENST00000476135	C4A	P0C0L4	1744 aa		10.35	□□□□□ -0.75
HDAC9-223	ENST00000476135	ITGB4	P16144	1822 aa		10.35	□□□□□ -0.75
HDAC9-223	ENST00000476135	GLTPD2	A6NH11	291 aa		10.34	□□□□□ -0.75
HDAC9-223	ENST00000476135	DALRD3	Q5D0E6	543 aa	Known RBP	10.34	□□□□□ -0.75
HDAC9-223	ENST00000476135	MPRIP	Q6WCQ1	1025 aa		10.34	□□□□□ -0.75
HDAC9-223	ENST00000476135	LINC00116	Q8NCU8	138 aa		10.34	□□□□□ -0.75
HDAC9-223	ENST00000476135	CNTNAP1	P78357	1384 aa		10.34	□□□□□ -0.75
HDAC9-223	ENST00000476135	KDM6A	O15550	1401 aa	Predicted RBP	10.33	□□□□□ -0.76
HDAC9-223	ENST00000476135	GNPAT	O15228	680 aa		10.33	□□□□□ -0.76
HDAC9-223	ENST00000476135	PBX2	P40425	430 aa		10.33	□□□□□ -0.76
HDAC9-223	ENST00000476135	LBX1	P52954	281 aa		10.33	□□□□□ -0.76
HDAC9-223	ENST00000476135	TMF1	P82094	1093 aa		10.33	□□□□□ -0.76
HDAC9-223	ENST00000476135	SBNO2	Q9Y2G9	1366 aa		10.32	□□□□□ -0.76
HDAC9-223	ENST00000476135	LOC102724428	A0A0B4J2F2	783 aa		10.32	□□□□□ -0.76
HDAC9-223	ENST00000476135	GTPBP6	O43824	516 aa	Predicted RBP	10.32	□□□□□ -0.76
HDAC9-223	ENST00000476135	SIK1	P57059	783 aa		10.32	□□□□□ -0.76
HDAC9-223	ENST00000476135	CRISPLD2	Q9H0B8	497 aa		10.32	□□□□□ -0.76
HDAC9-223	ENST00000476135	WBP1L	Q9NX94	342 aa		10.32	□□□□□ -0.76
HDAC9-223	ENST00000476135	VIRMA	Q69YN4	1812 aa	Known RBP	10.32	□□□□□ -0.76

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