RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 TM4SF1P30408 202 aa7.03□□□□□ -1.28
USP4-209ENST00000475873 RFC4P35249 363 aa7.03□□□□□ -1.28
USP4-209ENST00000475873 NKX1-1Q15270 411 aaPredicted RBP7.03□□□□□ -1.28
USP4-209ENST00000475873 ERFEQ4G0M1 354 aa7.03□□□□□ -1.28
USP4-209ENST00000475873 ZNF219Q9P2Y4 722 aaPredicted RBP7.03□□□□□ -1.28
USP4-209ENST00000475873 CNTNAP4Q9C0A0 1308 aa7.02□□□□□ -1.28
USP4-209ENST00000475873 USP42Q9H9J4 1324 aaKnown RBP7.02□□□□□ -1.28
USP4-209ENST00000475873 COL11A2P13942 1736 aaPredicted RBP7.02□□□□□ -1.29
USP4-209ENST00000475873 DLL1O00548 723 aa7.02□□□□□ -1.29
USP4-209ENST00000475873 GRM1Q13255 1194 aa7.02□□□□□ -1.29
USP4-209ENST00000475873 EAPPQ56P03 285 aaPredicted RBP7.02□□□□□ -1.29
USP4-209ENST00000475873 RC3H1Q5TC82 1133 aaKnown RBP7.02□□□□□ -1.29
USP4-209ENST00000475873 CNTROBQ8N137 903 aa7.02□□□□□ -1.29
USP4-209ENST00000475873 RAPGEF4Q8WZA2 1011 aa7.02□□□□□ -1.29
USP4-209ENST00000475873 ABT1Q9ULW3 272 aaKnown RBP7.02□□□□□ -1.29
USP4-209ENST00000475873 BRCA2P51587 3418 aa7.02□□□□□ -1.29
USP4-209ENST00000475873 ZNF541Q9H0D2 1346 aa7.01□□□□□ -1.29
USP4-209ENST00000475873 ANKRD31Q8N7Z5 1873 aa7.01□□□□□ -1.29
USP4-209ENST00000475873 TATP17735 454 aaPredicted RBP7.01□□□□□ -1.29
USP4-209ENST00000475873 CST9Q5W186 159 aa7.01□□□□□ -1.29
USP4-209ENST00000475873 TTLL6Q8N841 843 aa7.01□□□□□ -1.29
USP4-209ENST00000475873 ZIC5Q96T25 663 aa7.01□□□□□ -1.29
USP4-209ENST00000475873 DDX21Q9NR30 783 aaKnown RBP eCLIP7.01□□□□□ -1.29
USP4-209ENST00000475873 EDC4Q6P2E9 1401 aaKnown RBP7.01□□□□□ -1.29
USP4-209ENST00000475873 RANBP2P49792 3224 aaKnown RBP7.01□□□□□ -1.29
USP4-209ENST00000475873 HTTP42858 3142 aa7□□□□□ -1.29
USP4-209ENST00000475873 BEGAINQ9BUH8 593 aa7□□□□□ -1.29
USP4-209ENST00000475873 NCAPD2Q15021 1401 aa7□□□□□ -1.29
USP4-209ENST00000475873 LTBP3Q9NS15 1303 aa7□□□□□ -1.29
USP4-209ENST00000475873 SLX4Q8IY92 1834 aa6.99□□□□□ -1.29
USP4-209ENST00000475873 A0A1W2PP64 1363 aa6.99□□□□□ -1.29
USP4-209ENST00000475873 CACNA1SQ13698 1873 aa6.99□□□□□ -1.29
USP4-209ENST00000475873 TRPM7Q96QT4 1865 aa6.99□□□□□ -1.29
USP4-209ENST00000475873 IQCA1LA6NCM1 817 aa6.99□□□□□ -1.29
USP4-209ENST00000475873 TRAF5O00463 557 aa6.99□□□□□ -1.29
USP4-209ENST00000475873 C21orf2O43822 256 aa6.99□□□□□ -1.29
USP4-209ENST00000475873 EPHX2P34913 555 aa6.99□□□□□ -1.29
USP4-209ENST00000475873 NFIXQ14938 502 aa6.99□□□□□ -1.29
USP4-209ENST00000475873 RRS1Q15050 365 aaKnown RBP6.99□□□□□ -1.29
USP4-209ENST00000475873 SLC12A5Q9H2X9 1139 aa6.99□□□□□ -1.29
USP4-209ENST00000475873 TMOD3Q9NYL9 352 aa6.99□□□□□ -1.29
USP4-209ENST00000475873 SMG6Q86US8 1419 aaKnown RBP6.99□□□□□ -1.29
USP4-209ENST00000475873 CEP290O15078 2479 aa6.99□□□□□ -1.29
USP4-209ENST00000475873 TJP1Q07157 1748 aa6.98□□□□□ -1.29
USP4-209ENST00000475873 RTL1A6NKG5 1358 aa6.98□□□□□ -1.29
USP4-209ENST00000475873 MAP2K2P36507 400 aa6.98□□□□□ -1.29
USP4-209ENST00000475873 ECE1P42892 770 aa6.98□□□□□ -1.29
USP4-209ENST00000475873 CRKLP46109 303 aaKnown RBP6.98□□□□□ -1.29
USP4-209ENST00000475873 AMPHP49418 695 aa6.98□□□□□ -1.29
USP4-209ENST00000475873 CIAPIN1Q6FI81 312 aa6.98□□□□□ -1.29
USP4-209ENST00000475873 PAXIP1Q6ZW49 1069 aaPredicted RBP6.98□□□□□ -1.29
USP4-209ENST00000475873 C2CD5Q86YS7 1000 aa6.98□□□□□ -1.29
USP4-209ENST00000475873 GCC1Q96CN9 775 aa6.98□□□□□ -1.29
USP4-209ENST00000475873 BCL2L12Q9HB09 334 aa6.98□□□□□ -1.29
USP4-209ENST00000475873 HACL1Q9UJ83 578 aa6.98□□□□□ -1.29
USP4-209ENST00000475873 CLEC11AQ9Y240 323 aa6.98□□□□□ -1.29
USP4-209ENST00000475873 TLL2Q9Y6L7 1015 aa6.98□□□□□ -1.29
USP4-209ENST00000475873 CENPFP49454 3210 aa6.98□□□□□ -1.29
USP4-209ENST00000475873 RNF123Q5XPI4 1314 aa6.98□□□□□ -1.29
USP4-209ENST00000475873 INSRP06213 1382 aa6.97□□□□□ -1.29
USP4-209ENST00000475873 CA12O43570 354 aa6.97□□□□□ -1.29
USP4-209ENST00000475873 BRPF1P55201 1214 aaPredicted RBP6.97□□□□□ -1.29
USP4-209ENST00000475873 HSP90AB2PQ58FF8 381 aa6.97□□□□□ -1.29
USP4-209ENST00000475873 RBM42Q9BTD8 480 aaKnown RBP6.97□□□□□ -1.29
USP4-209ENST00000475873 TAOK3Q9H2K8 898 aa6.97□□□□□ -1.29
USP4-209ENST00000475873 SCN11AQ9UI33 1791 aa6.97□□□□□ -1.29
USP4-209ENST00000475873 USPL1Q5W0Q7 1092 aa6.96□□□□□ -1.3
USP4-209ENST00000475873 INTS5Q6P9B9 1019 aaKnown RBP6.96□□□□□ -1.3
USP4-209ENST00000475873 SAPCD2Q86UD0 394 aa6.96□□□□□ -1.3
USP4-209ENST00000475873 COL4A5P29400 1685 aa6.96□□□□□ -1.3
USP4-209ENST00000475873 LAMA3Q16787 3333 aa6.95□□□□□ -1.3
USP4-209ENST00000475873 SERPINB2P05120 415 aa6.95□□□□□ -1.3
USP4-209ENST00000475873 PHKG2P15735 406 aa6.95□□□□□ -1.3
USP4-209ENST00000475873 CCDC24Q8N4L8 307 aa6.95□□□□□ -1.3
USP4-209ENST00000475873 HPS5Q9UPZ3 1129 aa6.95□□□□□ -1.3
USP4-209ENST00000475873 RAB3GAP2Q9H2M9 1393 aa6.95□□□□□ -1.3
USP4-209ENST00000475873 H0YIN7 160 aa6.94□□□□□ -1.3
USP4-209ENST00000475873 OLFM4Q6UX06 510 aa6.94□□□□□ -1.3
USP4-209ENST00000475873 NBPF15Q8N660 670 aa6.94□□□□□ -1.3
USP4-209ENST00000475873 C7orf43Q8WVR3 580 aa6.94□□□□□ -1.3
USP4-209ENST00000475873 KIAA0100Q14667 2235 aaKnown RBP6.94□□□□□ -1.3
USP4-209ENST00000475873 ARFGEF2Q9Y6D5 1785 aa6.94□□□□□ -1.3
USP4-209ENST00000475873 SOS1Q07889 1333 aaPredicted RBP6.94□□□□□ -1.3
USP4-209ENST00000475873 VCANP13611 3396 aa6.94□□□□□ -1.3
USP4-209ENST00000475873 UNC80Q8N2C7 3258 aa6.93□□□□□ -1.3
USP4-209ENST00000475873 PTCD1O75127 700 aaKnown RBP6.93□□□□□ -1.3
USP4-209ENST00000475873 PNMA8AQ86V59 439 aaPredicted RBP6.93□□□□□ -1.3
USP4-209ENST00000475873 TMC1Q8TDI8 760 aa6.93□□□□□ -1.3
USP4-209ENST00000475873 ZNF622Q969S3 477 aaKnown RBP eCLIP6.93□□□□□ -1.32e-6■■□□□ 13.5
USP4-209ENST00000475873 ZNF277Q9NRM2 450 aaPredicted RBP6.93□□□□□ -1.3
USP4-209ENST00000475873 TONSLQ96HA7 1378 aa6.93□□□□□ -1.3
USP4-209ENST00000475873 FZD9O00144 591 aa6.92□□□□□ -1.3
USP4-209ENST00000475873 EPS15P42566 896 aa6.92□□□□□ -1.3
USP4-209ENST00000475873 SCNN1DP51172 638 aa6.92□□□□□ -1.3
USP4-209ENST00000475873 PRPF40BQ6NWY9 871 aaKnown RBP6.92□□□□□ -1.3
USP4-209ENST00000475873 HDGFL2Q7Z4V5 671 aaPredicted RBP6.92□□□□□ -1.3
USP4-209ENST00000475873 SLC17A8Q8NDX2 589 aa6.92□□□□□ -1.3
USP4-209ENST00000475873 COG3Q96JB2 828 aa6.92□□□□□ -1.3
USP4-209ENST00000475873 BCORQ6W2J9 1755 aa6.92□□□□□ -1.3
USP4-209ENST00000475873 SNED1Q8TER0 1413 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms