RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 SPG7Q9UQ90 795 aa11.5□□□□□ -0.57
USP54-211ENST00000474929 POLRMTO00411 1230 aaKnown RBP11.49□□□□□ -0.57
USP54-211ENST00000474929 BRPF1P55201 1214 aaPredicted RBP11.49□□□□□ -0.57
USP54-211ENST00000474929 DDR1Q08345 913 aa11.49□□□□□ -0.57
USP54-211ENST00000474929 EAPPQ56P03 285 aaPredicted RBP11.49□□□□□ -0.57
USP54-211ENST00000474929 PPARGC1BQ86YN6 1023 aaKnown RBP11.49□□□□□ -0.57
USP54-211ENST00000474929 TAOK3Q9H2K8 898 aa11.49□□□□□ -0.57
USP54-211ENST00000474929 CLEC11AQ9Y240 323 aa11.49□□□□□ -0.57
USP54-211ENST00000474929 KIF24Q5T7B8 1368 aa11.49□□□□□ -0.57
USP54-211ENST00000474929 FER1L6Q2WGJ9 1857 aa11.49□□□□□ -0.57
USP54-211ENST00000474929 DDNO94850 711 aaPredicted RBP11.48□□□□□ -0.57
USP54-211ENST00000474929 SOX10P56693 466 aa11.48□□□□□ -0.57
USP54-211ENST00000474929 HACL1Q9UJ83 578 aa11.48□□□□□ -0.57
USP54-211ENST00000474929 ASAP1Q9ULH1 1129 aa11.48□□□□□ -0.57
USP54-211ENST00000474929 NRXN2Q9P2S2 1712 aa11.48□□□□□ -0.57
USP54-211ENST00000474929 H0YIN7 160 aa11.47□□□□□ -0.57
USP54-211ENST00000474929 CNTROBQ8N137 903 aa11.47□□□□□ -0.57
USP54-211ENST00000474929 FKBP8Q14318 412 aa11.46□□□□□ -0.57
USP54-211ENST00000474929 HABP4Q5JVS0 413 aaKnown RBP11.46□□□□□ -0.57
USP54-211ENST00000474929 USHBP1Q8N6Y0 703 aa11.46□□□□□ -0.57
USP54-211ENST00000474929 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.46□□□□□ -0.57
USP54-211ENST00000474929 CASP8AP2Q9UKL3 1982 aa11.45□□□□□ -0.58
USP54-211ENST00000474929 INSRP06213 1382 aa11.45□□□□□ -0.58
USP54-211ENST00000474929 EPHX2P34913 555 aa11.45□□□□□ -0.58
USP54-211ENST00000474929 DDX21Q9NR30 783 aaKnown RBP eCLIP11.45□□□□□ -0.58
USP54-211ENST00000474929 ATG3Q9NT62 314 aa11.45□□□□□ -0.58
USP54-211ENST00000474929 A0A1W2PP64 1363 aa11.44□□□□□ -0.58
USP54-211ENST00000474929 FLT4P35916 1363 aa11.44□□□□□ -0.58
USP54-211ENST00000474929 ZPR1O75312 459 aa11.44□□□□□ -0.58
USP54-211ENST00000474929 TM4SF1P30408 202 aa11.44□□□□□ -0.58
USP54-211ENST00000474929 GRM1Q13255 1194 aa11.44□□□□□ -0.58
USP54-211ENST00000474929 CYP4F22Q6NT55 531 aa11.44□□□□□ -0.58
USP54-211ENST00000474929 C2CD5Q86YS7 1000 aa11.44□□□□□ -0.58
USP54-211ENST00000474929 HHIPL1Q96JK4 782 aa11.44□□□□□ -0.58
USP54-211ENST00000474929 RBM42Q9BTD8 480 aaKnown RBP11.44□□□□□ -0.58
USP54-211ENST00000474929 TSKSQ9UJT2 592 aa11.44□□□□□ -0.58
USP54-211ENST00000474929 AFDNP55196 1824 aaKnown RBP11.44□□□□□ -0.58
USP54-211ENST00000474929 NCAPD2Q15021 1401 aa11.43□□□□□ -0.58
USP54-211ENST00000474929 TRPM7Q96QT4 1865 aa11.43□□□□□ -0.58
USP54-211ENST00000474929 IFNL2Q8IZJ0 200 aa11.43□□□□□ -0.58
USP54-211ENST00000474929 TMC1Q8TDI8 760 aa11.43□□□□□ -0.58
USP54-211ENST00000474929 TLL2Q9Y6L7 1015 aa11.43□□□□□ -0.58
USP54-211ENST00000474929 MAP1SQ66K74 1059 aaPredicted RBP11.42□□□□□ -0.58
USP54-211ENST00000474929 SRP68Q9UHB9 627 aaKnown RBP11.42□□□□□ -0.58
USP54-211ENST00000474929 MYH14Q7Z406 1995 aaKnown RBP11.41□□□□□ -0.58
USP54-211ENST00000474929 ADAMTS7Q9UKP4 1686 aa11.41□□□□□ -0.58
USP54-211ENST00000474929 CRKLP46109 303 aaKnown RBP11.41□□□□□ -0.58
USP54-211ENST00000474929 SAGE1Q9NXZ1 904 aa11.41□□□□□ -0.58
USP54-211ENST00000474929 RAB3GAP2Q9H2M9 1393 aa11.41□□□□□ -0.58
USP54-211ENST00000474929 ERVV-2B6SEH9 535 aa11.4□□□□□ -0.58
USP54-211ENST00000474929 DLL1O00548 723 aa11.4□□□□□ -0.58
USP54-211ENST00000474929 C21orf2O43822 256 aa11.4□□□□□ -0.58
USP54-211ENST00000474929 HSP90AB1P08238 724 aaKnown RBP11.4□□□□□ -0.58
USP54-211ENST00000474929 PDE6BP35913 854 aa11.4□□□□□ -0.58
USP54-211ENST00000474929 ARFGEF2Q9Y6D5 1785 aa11.4□□□□□ -0.58
USP54-211ENST00000474929 WASHC2AQ641Q2 1341 aa11.39□□□□□ -0.59
USP54-211ENST00000474929 PHKG2P15735 406 aa11.39□□□□□ -0.59
USP54-211ENST00000474929 NOGQ13253 232 aa11.39□□□□□ -0.59
USP54-211ENST00000474929 CNKSR1Q969H4 720 aa11.39□□□□□ -0.59
USP54-211ENST00000474929 PUS7Q96PZ0 661 aaKnown RBP11.39□□□□□ -0.59
USP54-211ENST00000474929 ANKRD26Q9UPS8 1709 aa11.39□□□□□ -0.59
USP54-211ENST00000474929 ROCK2O75116 1388 aaKnown RBP11.39□□□□□ -0.59
USP54-211ENST00000474929 TONSLQ96HA7 1378 aa11.39□□□□□ -0.59
USP54-211ENST00000474929 SERPINB2P05120 415 aa11.38□□□□□ -0.59
USP54-211ENST00000474929 LMOD1P29536 600 aaPredicted RBP11.38□□□□□ -0.59
USP54-211ENST00000474929 PKN2Q16513 984 aaKnown RBP11.38□□□□□ -0.59
USP54-211ENST00000474929 USPL1Q5W0Q7 1092 aa11.38□□□□□ -0.59
USP54-211ENST00000474929 ZNF622Q969S3 477 aaKnown RBP eCLIP11.38□□□□□ -0.59
USP54-211ENST00000474929 RNF123Q5XPI4 1314 aa11.37□□□□□ -0.59
USP54-211ENST00000474929 AOC2O75106 756 aa11.37□□□□□ -0.59
USP54-211ENST00000474929 FXR1P51114 621 aaKnown RBP eCLIP11.37□□□□□ -0.59
USP54-211ENST00000474929 NFIXQ14938 502 aa11.37□□□□□ -0.59
USP54-211ENST00000474929 AKAP4Q5JQC9 854 aa11.37□□□□□ -0.59
USP54-211ENST00000474929 CTU1Q7Z7A3 348 aaKnown RBP11.37□□□□□ -0.59
USP54-211ENST00000474929 GPC2Q8N158 579 aa11.37□□□□□ -0.59
USP54-211ENST00000474929 SLC4A9Q96Q91 983 aa11.37□□□□□ -0.59
USP54-211ENST00000474929 TJP1Q07157 1748 aa11.36□□□□□ -0.59
USP54-211ENST00000474929 RRS1Q15050 365 aaKnown RBP11.36□□□□□ -0.59
USP54-211ENST00000474929 CCDC93Q567U6 631 aa11.36□□□□□ -0.59
USP54-211ENST00000474929 SAPCD2Q86UD0 394 aa11.36□□□□□ -0.59
USP54-211ENST00000474929 BRIP1Q9BX63 1249 aa11.36□□□□□ -0.59
USP54-211ENST00000474929 CUL9Q8IWT3 2517 aa11.36□□□□□ -0.59
USP54-211ENST00000474929 COL11A2P13942 1736 aaPredicted RBP11.35□□□□□ -0.59
USP54-211ENST00000474929 CIAPIN1Q6FI81 312 aa11.35□□□□□ -0.59
USP54-211ENST00000474929 SLC12A5Q9H2X9 1139 aa11.35□□□□□ -0.59
USP54-211ENST00000474929 NARFQ9UHQ1 456 aa11.35□□□□□ -0.59
USP54-211ENST00000474929 ZNF541Q9H0D2 1346 aa11.35□□□□□ -0.59
USP54-211ENST00000474929 BCORQ6W2J9 1755 aa11.34□□□□□ -0.59
USP54-211ENST00000474929 COL15A1P39059 1388 aa11.34□□□□□ -0.59
USP54-211ENST00000474929 CARMIL3Q8ND23 1372 aa11.34□□□□□ -0.59
USP54-211ENST00000474929 STYK1Q6J9G0 422 aa11.34□□□□□ -0.59
USP54-211ENST00000474929 USP50Q70EL3 339 aaPredicted RBP11.34□□□□□ -0.59
USP54-211ENST00000474929 SOS1Q07889 1333 aaPredicted RBP11.34□□□□□ -0.59
USP54-211ENST00000474929 FKBP4Q02790 459 aaKnown RBP eCLIP11.33□□□□□ -0.6
USP54-211ENST00000474929 HSP90AB2PQ58FF8 381 aa11.33□□□□□ -0.6
USP54-211ENST00000474929 PRPF40BQ6NWY9 871 aaKnown RBP11.33□□□□□ -0.6
USP54-211ENST00000474929 BICDL1Q6ZP65 573 aa11.33□□□□□ -0.6
USP54-211ENST00000474929 ANKRD31Q8N7Z5 1873 aa11.33□□□□□ -0.6
USP54-211ENST00000474929 CABP4P57796 275 aa11.32□□□□□ -0.6
USP54-211ENST00000474929 CST9Q5W186 159 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms