RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 CYP27B1O15528 508 aa12.17□□□□□ -0.46
USP39-214ENST00000474572 PLEKHG5O94827 1062 aa12.17□□□□□ -0.46
USP39-214ENST00000474572 UBTFL1P0CB47 393 aaPredicted RBP12.17□□□□□ -0.46
USP39-214ENST00000474572 MTX1Q13505 466 aa12.17□□□□□ -0.46
USP39-214ENST00000474572 C16orf71Q8IYS4 520 aaPredicted RBP12.17□□□□□ -0.46
USP39-214ENST00000474572 PI4KAP1Q8N8J0 262 aa12.17□□□□□ -0.46
USP39-214ENST00000474572 TBC1D2Q9BYX2 928 aa12.17□□□□□ -0.46
USP39-214ENST00000474572 DDX21Q9NR30 783 aaKnown RBP eCLIP12.17□□□□□ -0.46
USP39-214ENST00000474572 HYPKQ9NX55 129 aa12.17□□□□□ -0.46
USP39-214ENST00000474572 LRRFIP2Q9Y608 721 aaKnown RBP12.17□□□□□ -0.46
USP39-214ENST00000474572 ARFGEF2Q9Y6D5 1785 aa12.17□□□□□ -0.46
USP39-214ENST00000474572 TOGARAM1Q9Y4F4 1720 aa12.17□□□□□ -0.46
USP39-214ENST00000474572 WNK3Q9BYP7 1800 aa12.16□□□□□ -0.46
USP39-214ENST00000474572 UTYO14607 1347 aa12.16□□□□□ -0.46
USP39-214ENST00000474572 AOX1Q06278 1338 aa12.16□□□□□ -0.46
USP39-214ENST00000474572 COL14A1Q05707 1796 aaKnown RBP12.16□□□□□ -0.46
USP39-214ENST00000474572 SMARCA5O60264 1052 aaPredicted RBP12.16□□□□□ -0.46
USP39-214ENST00000474572 CSB-PGBD3P0DP91 1061 aa12.16□□□□□ -0.46
USP39-214ENST00000474572 PDIA6Q15084 440 aa12.16□□□□□ -0.46
USP39-214ENST00000474572 KSR2Q6VAB6 950 aa12.16□□□□□ -0.46
USP39-214ENST00000474572 OTUD7AQ8TE49 926 aaPredicted RBP12.16□□□□□ -0.46
USP39-214ENST00000474572 SNX21Q969T3 373 aa12.16□□□□□ -0.46
USP39-214ENST00000474572 NUP188Q5SRE5 1749 aa12.15□□□□□ -0.46
USP39-214ENST00000474572 PROSER3Q2NL68 480 aa12.15□□□□□ -0.46
USP39-214ENST00000474572 LRRCC1Q9C099 1032 aa12.15□□□□□ -0.46
USP39-214ENST00000474572 ANTXR1Q9H6X2 564 aa12.15□□□□□ -0.46
USP39-214ENST00000474572 STAP2Q9UGK3 403 aa12.15□□□□□ -0.46
USP39-214ENST00000474572 KCPQ6ZWJ8 1503 aa12.15□□□□□ -0.46
USP39-214ENST00000474572 PRAMEF22A3QJZ6 481 aa12.14□□□□□ -0.47
USP39-214ENST00000474572 RAB11FIP3O75154 756 aa12.14□□□□□ -0.47
USP39-214ENST00000474572 ANXA1P04083 346 aa12.14□□□□□ -0.47
USP39-214ENST00000474572 SDSP20132 328 aa12.14□□□□□ -0.47
USP39-214ENST00000474572 PDE1AP54750 535 aa12.14□□□□□ -0.47
USP39-214ENST00000474572 NBR1Q14596 966 aa12.14□□□□□ -0.47
USP39-214ENST00000474572 NKX1-1Q15270 411 aaPredicted RBP12.14□□□□□ -0.47
USP39-214ENST00000474572 LRP10Q7Z4F1 713 aa12.14□□□□□ -0.47
USP39-214ENST00000474572 KIF2CQ99661 725 aa12.14□□□□□ -0.47
USP39-214ENST00000474572 CARD10Q9BWT7 1032 aa12.14□□□□□ -0.47
USP39-214ENST00000474572 EXOC6BQ9Y2D4 811 aa12.14□□□□□ -0.47
USP39-214ENST00000474572 COL16A1Q07092 1604 aaPredicted RBP12.14□□□□□ -0.47
USP39-214ENST00000474572 AFDNP55196 1824 aaKnown RBP12.14□□□□□ -0.47
USP39-214ENST00000474572 PCDH11XQ9BZA7 1347 aa12.13□□□□□ -0.47
USP39-214ENST00000474572 PCDH11YQ9BZA8 1340 aa12.13□□□□□ -0.47
USP39-214ENST00000474572 ROBO1Q9Y6N7 1651 aa12.13□□□□□ -0.47
USP39-214ENST00000474572 TNS2Q63HR2 1409 aa12.13□□□□□ -0.47
USP39-214ENST00000474572 LRP6O75581 1613 aa12.13□□□□□ -0.47
USP39-214ENST00000474572 LINS1Q8NG48 757 aa12.13□□□□□ -0.47
USP39-214ENST00000474572 PRDM11Q9NQV5 511 aa12.13□□□□□ -0.47
USP39-214ENST00000474572 AK9Q5TCS8 1911 aa12.13□□□□□ -0.47
USP39-214ENST00000474572 NBPF7P0C2Y1 421 aaPredicted RBP12.12□□□□□ -0.47
USP39-214ENST00000474572 SLC39A6Q13433 755 aa12.12□□□□□ -0.47
USP39-214ENST00000474572 NFKBIBQ15653 356 aa12.12□□□□□ -0.47
USP39-214ENST00000474572 RTL5Q5HYW3 569 aaPredicted RBP12.12□□□□□ -0.47
USP39-214ENST00000474572 PPP1R42Q7Z4L9 355 aa12.12□□□□□ -0.47
USP39-214ENST00000474572 NFATC2IPQ8NCF5 419 aa12.12□□□□□ -0.47
USP39-214ENST00000474572 ZNF496Q96IT1 587 aaPredicted RBP12.12□□□□□ -0.47
USP39-214ENST00000474572 HDAC5Q9UQL6 1122 aa12.12□□□□□ -0.47
USP39-214ENST00000474572 MAP3K2Q9Y2U5 619 aa12.12□□□□□ -0.47
USP39-214ENST00000474572 COL15A1P39059 1388 aa12.12□□□□□ -0.47
USP39-214ENST00000474572 ERBB4Q15303 1308 aa12.11□□□□□ -0.47
USP39-214ENST00000474572 DDX58O95786 925 aaKnown RBP12.11□□□□□ -0.47
USP39-214ENST00000474572 FMNL2Q96PY5 1086 aa12.11□□□□□ -0.47
USP39-214ENST00000474572 LTBP4Q8N2S1 1624 aa12.11□□□□□ -0.47
USP39-214ENST00000474572 DISP2A7MBM2 1401 aa12.11□□□□□ -0.47
USP39-214ENST00000474572 USP42Q9H9J4 1324 aaKnown RBP12.11□□□□□ -0.47
USP39-214ENST00000474572 ERVV-2B6SEH9 535 aa12.1□□□□□ -0.47
USP39-214ENST00000474572 SNRPA1P09661 255 aaKnown RBP12.1□□□□□ -0.47
USP39-214ENST00000474572 MX1P20591 662 aa12.1□□□□□ -0.47
USP39-214ENST00000474572 ZCRB1Q8TBF4 217 aaKnown RBP12.1□□□□□ -0.47
USP39-214ENST00000474572 TJP1Q07157 1748 aa12.1□□□□□ -0.47
USP39-214ENST00000474572 APBB1O00213 710 aa12.09□□□□□ -0.47
USP39-214ENST00000474572 IL2RBP14784 551 aa12.09□□□□□ -0.47
USP39-214ENST00000474572 HSP90AB4PQ58FF6 505 aa12.09□□□□□ -0.47
USP39-214ENST00000474572 TOM1L2Q6ZVM7 507 aa12.09□□□□□ -0.47
USP39-214ENST00000474572 RHPN1Q8TCX5 695 aa12.09□□□□□ -0.47
USP39-214ENST00000474572 KIF1BPQ96EK5 621 aa12.09□□□□□ -0.47
USP39-214ENST00000474572 USP26Q9BXU7 913 aa12.09□□□□□ -0.47
USP39-214ENST00000474572 ITGB4P16144 1822 aa12.09□□□□□ -0.47
USP39-214ENST00000474572 NRAPQ86VF7 1730 aa12.08□□□□□ -0.47
USP39-214ENST00000474572 GRM8O00222 908 aa12.08□□□□□ -0.48
USP39-214ENST00000474572 SRGAP3O43295 1099 aa12.08□□□□□ -0.48
USP39-214ENST00000474572 IGKV5-2P06315 115 aa12.08□□□□□ -0.48
USP39-214ENST00000474572 DDIT3P35638 169 aa12.08□□□□□ -0.48
USP39-214ENST00000474572 CABP4P57796 275 aa12.08□□□□□ -0.48
USP39-214ENST00000474572 LARP1Q6PKG0 1096 aaKnown RBP12.08□□□□□ -0.48
USP39-214ENST00000474572 CASC1Q6TDU7 716 aa12.08□□□□□ -0.48
USP39-214ENST00000474572 HSCBQ8IWL3 235 aa12.08□□□□□ -0.48
USP39-214ENST00000474572 TTC5Q8N0Z6 440 aa12.08□□□□□ -0.48
USP39-214ENST00000474572 METTL22Q9BUU2 404 aaPredicted RBP12.08□□□□□ -0.48
USP39-214ENST00000474572 EPB41L2O43491 1005 aaKnown RBP12.07□□□□□ -0.48
USP39-214ENST00000474572 SURF6O75683 361 aaKnown RBP12.07□□□□□ -0.48
USP39-214ENST00000474572 CWF19L2Q2TBE0 894 aaKnown RBP12.07□□□□□ -0.48
USP39-214ENST00000474572 IL17RAQ96F46 866 aa12.07□□□□□ -0.48
USP39-214ENST00000474572 KAZALD1Q96I82 304 aa12.07□□□□□ -0.48
USP39-214ENST00000474572 SUCLG2Q96I99 432 aa12.07□□□□□ -0.48
USP39-214ENST00000474572 USP16Q9Y5T5 823 aa12.07□□□□□ -0.48
USP39-214ENST00000474572 NEURL1BA8MQ27 555 aa12.06□□□□□ -0.48
USP39-214ENST00000474572 ERC2O15083 957 aa12.06□□□□□ -0.48
USP39-214ENST00000474572 PI4K2BQ8TCG2 481 aa12.06□□□□□ -0.48
USP39-214ENST00000474572 XAGE3Q8WTP9 111 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms