RNA–Protein interactions for RNA: ENST00000474391.1

COL4A1-203, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 2

Gene COL4A1, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-203ENST00000474391 COL15A1P39059 1388 aa13.96□□□□□ -0.17
COL4A1-203ENST00000474391 YY1P25490 414 aa13.96□□□□□ -0.17
COL4A1-203ENST00000474391 EIF5P55010 431 aaKnown RBP13.96□□□□□ -0.17
COL4A1-203ENST00000474391 FKBP8Q14318 412 aa13.96□□□□□ -0.17
COL4A1-203ENST00000474391 GPR162Q16538 588 aa13.96□□□□□ -0.17
COL4A1-203ENST00000474391 NARFQ9UHQ1 456 aa13.96□□□□□ -0.17
COL4A1-203ENST00000474391 MAPK8IP3Q9UPT6 1336 aa13.95□□□□□ -0.18
COL4A1-203ENST00000474391 TAF7Q15545 349 aaPredicted RBP13.95□□□□□ -0.18
COL4A1-203ENST00000474391 C10orf71Q711Q0 1435 aa13.95□□□□□ -0.18
COL4A1-203ENST00000474391 KIF13BQ9NQT8 1826 aa13.94□□□□□ -0.18
COL4A1-203ENST00000474391 DLG5Q8TDM6 1919 aa13.94□□□□□ -0.18
COL4A1-203ENST00000474391 ZPR1O75312 459 aa13.94□□□□□ -0.18
COL4A1-203ENST00000474391 YBX3P16989 372 aaKnown RBP eCLIP13.94□□□□□ -0.18
COL4A1-203ENST00000474391 CANXP27824 592 aaKnown RBP13.94□□□□□ -0.18
COL4A1-203ENST00000474391 TM4SF1P30408 202 aa13.94□□□□□ -0.18
COL4A1-203ENST00000474391 USPL1Q5W0Q7 1092 aa13.94□□□□□ -0.18
COL4A1-203ENST00000474391 PARP3Q9Y6F1 533 aa13.94□□□□□ -0.18
COL4A1-203ENST00000474391 IL6STP40189 918 aaPredicted RBP13.93□□□□□ -0.18
COL4A1-203ENST00000474391 DDR1Q08345 913 aa13.93□□□□□ -0.18
COL4A1-203ENST00000474391 BCL2L12Q9HB09 334 aa13.93□□□□□ -0.18
COL4A1-203ENST00000474391 PXDNLA1KZ92 1463 aa13.93□□□□□ -0.18
COL4A1-203ENST00000474391 KIAA1551Q9HCM1 1747 aa13.93□□□□□ -0.18
COL4A1-203ENST00000474391 A0A087WZG4 1122 aa13.92□□□□□ -0.18
COL4A1-203ENST00000474391 GRIN3BO60391 1043 aa13.92□□□□□ -0.18
COL4A1-203ENST00000474391 SNRPA1P09661 255 aaKnown RBP13.92□□□□□ -0.18
COL4A1-203ENST00000474391 TGFB2P61812 414 aa13.92□□□□□ -0.18
COL4A1-203ENST00000474391 PNISRQ8TF01 805 aaKnown RBP13.92□□□□□ -0.18
COL4A1-203ENST00000474391 USP16Q9Y5T5 823 aa13.92□□□□□ -0.18
COL4A1-203ENST00000474391 PRAMEF22A3QJZ6 481 aa13.91□□□□□ -0.18
COL4A1-203ENST00000474391 POLRMTO00411 1230 aaKnown RBP13.91□□□□□ -0.18
COL4A1-203ENST00000474391 A1BGP04217 495 aa13.91□□□□□ -0.18
COL4A1-203ENST00000474391 TMPOP42166 694 aaKnown RBP13.91□□□□□ -0.18
COL4A1-203ENST00000474391 PELP1Q8IZL8 1130 aaKnown RBP13.91□□□□□ -0.18
COL4A1-203ENST00000474391 THUMPD2Q9BTF0 503 aaKnown RBP13.91□□□□□ -0.18
COL4A1-203ENST00000474391 KDM3BQ7LBC6 1761 aa13.91□□□□□ -0.18
COL4A1-203ENST00000474391 RIPK4P57078 832 aa13.9□□□□□ -0.18
COL4A1-203ENST00000474391 MIS18AQ9NYP9 233 aa13.9□□□□□ -0.18
COL4A1-203ENST00000474391 ZNF316A6NFI3 1004 aaPredicted RBP13.89□□□□□ -0.19
COL4A1-203ENST00000474391 NFIXQ14938 502 aa13.89□□□□□ -0.19
COL4A1-203ENST00000474391 WDR43Q15061 677 aaKnown RBP eCLIP13.89□□□□□ -0.19
COL4A1-203ENST00000474391 RUNDC1Q96C34 613 aa13.89□□□□□ -0.19
COL4A1-203ENST00000474391 ADAMTS8Q9UP79 889 aa13.89□□□□□ -0.19
COL4A1-203ENST00000474391 CHD4Q14839 1912 aa13.89□□□□□ -0.19
COL4A1-203ENST00000474391 NRXN2Q9P2S2 1712 aa13.89□□□□□ -0.19
COL4A1-203ENST00000474391 SCN7AQ01118 1682 aa13.88□□□□□ -0.19
COL4A1-203ENST00000474391 EIF4A1P60842 406 aaKnown RBP13.88□□□□□ -0.19
COL4A1-203ENST00000474391 LMOD3Q0VAK6 560 aa13.88□□□□□ -0.19
COL4A1-203ENST00000474391 A0A0G2JLW4 131 aa13.87□□□□□ -0.19
COL4A1-203ENST00000474391 NBPF26B4DH59 902 aa13.87□□□□□ -0.19
COL4A1-203ENST00000474391 GIGYF1O75420 1035 aaPredicted RBP13.87□□□□□ -0.19
COL4A1-203ENST00000474391 KCNA3P22001 575 aa13.87□□□□□ -0.19
COL4A1-203ENST00000474391 NBPF10Q6P3W6 841 aaKnown RBP13.87□□□□□ -0.19
COL4A1-203ENST00000474391 CCDC146Q8IYE0 955 aa13.87□□□□□ -0.19
COL4A1-203ENST00000474391 NBPF15Q8N660 670 aa13.87□□□□□ -0.19
COL4A1-203ENST00000474391 BABAM1Q9NWV8 329 aa13.87□□□□□ -0.19
COL4A1-203ENST00000474391 TBC1D2BQ9UPU7 963 aa13.87□□□□□ -0.19
COL4A1-203ENST00000474391 LAMB4A4D0S4 1761 aa13.86□□□□□ -0.19
COL4A1-203ENST00000474391 CAMTA2O94983 1202 aa13.86□□□□□ -0.19
COL4A1-203ENST00000474391 DPEP1P16444 411 aa13.86□□□□□ -0.19
COL4A1-203ENST00000474391 N4BP2Q86UW6 1770 aaPredicted RBP13.86□□□□□ -0.19
COL4A1-203ENST00000474391 RGL2O15211 777 aa13.85□□□□□ -0.19
COL4A1-203ENST00000474391 SERPINB2P05120 415 aa13.85□□□□□ -0.19
COL4A1-203ENST00000474391 PIP4K2AP48426 406 aaPredicted RBP13.85□□□□□ -0.19
COL4A1-203ENST00000474391 TBC1D9BQ66K14 1250 aa13.85□□□□□ -0.19
COL4A1-203ENST00000474391 NPM2Q86SE8 214 aaKnown RBP13.85□□□□□ -0.19
COL4A1-203ENST00000474391 DZIP3Q86Y13 1208 aaKnown RBP13.85□□□□□ -0.19
COL4A1-203ENST00000474391 ZNF784Q8NCA9 323 aaPredicted RBP13.85□□□□□ -0.19
COL4A1-203ENST00000474391 TRIM35Q9UPQ4 493 aa13.85□□□□□ -0.19
COL4A1-203ENST00000474391 RRP7AQ9Y3A4 280 aaKnown RBP13.85□□□□□ -0.19
COL4A1-203ENST00000474391 ZNF330Q9Y3S2 320 aaPredicted RBP13.85□□□□□ -0.19
COL4A1-203ENST00000474391 BRCA1P38398 1863 aaKnown RBP13.84□□□□□ -0.19
COL4A1-203ENST00000474391 BCORQ6W2J9 1755 aa13.84□□□□□ -0.19
COL4A1-203ENST00000474391 CLEC4GQ6UXB4 293 aa13.84□□□□□ -0.19
COL4A1-203ENST00000474391 TSPYL4Q9UJ04 414 aa13.84□□□□□ -0.19
COL4A1-203ENST00000474391 WWC3Q9ULE0 1092 aa13.84□□□□□ -0.19
COL4A1-203ENST00000474391 AFDNP55196 1824 aaKnown RBP13.84□□□□□ -0.19
COL4A1-203ENST00000474391 CARMIL3Q8ND23 1372 aa13.83□□□□□ -0.2
COL4A1-203ENST00000474391 CHL1O00533 1208 aa13.82□□□□□ -0.2
COL4A1-203ENST00000474391 NEUROD2Q15784 382 aa13.82□□□□□ -0.2
COL4A1-203ENST00000474391 BICDL1Q6ZP65 573 aa13.82□□□□□ -0.2
COL4A1-203ENST00000474391 PIM2Q9P1W9 311 aa13.82□□□□□ -0.2
COL4A1-203ENST00000474391 BCS1LQ9Y276 419 aa13.82□□□□□ -0.2
COL4A1-203ENST00000474391 ERBB4Q15303 1308 aa13.82□□□□□ -0.2
COL4A1-203ENST00000474391 CHRNA5P30532 468 aa13.81□□□□□ -0.2
COL4A1-203ENST00000474391 CCDC184Q52MB2 194 aa13.81□□□□□ -0.2
COL4A1-203ENST00000474391 SETDB2Q96T68 719 aa13.81□□□□□ -0.2
COL4A1-203ENST00000474391 ADCY9O60503 1353 aa13.81□□□□□ -0.2
COL4A1-203ENST00000474391 PRR5LQ6MZQ0 368 aa13.8□□□□□ -0.2
COL4A1-203ENST00000474391 ZNF652Q9Y2D9 606 aa13.8□□□□□ -0.2
COL4A1-203ENST00000474391 ARFGEF1Q9Y6D6 1849 aa13.79□□□□□ -0.2
COL4A1-203ENST00000474391 APAF1O14727 1248 aa13.79□□□□□ -0.2
COL4A1-203ENST00000474391 DALRD3Q5D0E6 543 aaKnown RBP13.79□□□□□ -0.2
COL4A1-203ENST00000474391 LRP10Q7Z4F1 713 aa13.79□□□□□ -0.2
COL4A1-203ENST00000474391 BRIP1Q9BX63 1249 aa13.79□□□□□ -0.2
COL4A1-203ENST00000474391 DLEC1Q9Y238 1755 aa13.78□□□□□ -0.2
COL4A1-203ENST00000474391 ERVV-1B6SEH8 477 aa13.78□□□□□ -0.2
COL4A1-203ENST00000474391 PDIA6Q15084 440 aa13.78□□□□□ -0.2
COL4A1-203ENST00000474391 CFAP44Q96MT7 982 aa13.78□□□□□ -0.2
COL4A1-203ENST00000474391 PDZRN3Q9UPQ7 1066 aa13.78□□□□□ -0.2
COL4A1-203ENST00000474391 ANKRD31Q8N7Z5 1873 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms