RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 TTC5Q8N0Z6 440 aa19.95■□□□□ 0.78
LIMS1-212ENST00000474038 MRS2Q9HD23 443 aa19.95■□□□□ 0.78
LIMS1-212ENST00000474038 INTS5Q6P9B9 1019 aaKnown RBP19.94■□□□□ 0.78
LIMS1-212ENST00000474038 THUMPD2Q9BTF0 503 aaKnown RBP19.94■□□□□ 0.78
LIMS1-212ENST00000474038 RRP7AQ9Y3A4 280 aaKnown RBP19.94■□□□□ 0.78
LIMS1-212ENST00000474038 KCNQ3O43525 872 aa19.93■□□□□ 0.78
LIMS1-212ENST00000474038 GYS1P13807 737 aa19.93■□□□□ 0.78
LIMS1-212ENST00000474038 TAF7Q15545 349 aaPredicted RBP19.93■□□□□ 0.78
LIMS1-212ENST00000474038 PNISRQ8TF01 805 aaKnown RBP19.93■□□□□ 0.78
LIMS1-212ENST00000474038 ZNF496Q96IT1 587 aaPredicted RBP19.93■□□□□ 0.78
LIMS1-212ENST00000474038 VSIG10Q8N0Z9 540 aa19.92■□□□□ 0.78
LIMS1-212ENST00000474038 NLGN1Q8N2Q7 840 aa19.92■□□□□ 0.78
LIMS1-212ENST00000474038 CCDC87Q9NVE4 849 aa19.92■□□□□ 0.78
LIMS1-212ENST00000474038 SRP68Q9UHB9 627 aaKnown RBP19.92■□□□□ 0.78
LIMS1-212ENST00000474038 CYP19A1P11511 503 aaPredicted RBP19.91■□□□□ 0.78
LIMS1-212ENST00000474038 NEUROD2Q15784 382 aa19.91■□□□□ 0.78
LIMS1-212ENST00000474038 WWC3Q9ULE0 1092 aa19.91■□□□□ 0.78
LIMS1-212ENST00000474038 HEG1Q9ULI3 1381 aa19.91■□□□□ 0.78
LIMS1-212ENST00000474038 LMOD3Q0VAK6 560 aa19.9■□□□□ 0.78
LIMS1-212ENST00000474038 FMNL2Q96PY5 1086 aa19.9■□□□□ 0.78
LIMS1-212ENST00000474038 MIS18AQ9NYP9 233 aa19.9■□□□□ 0.78
LIMS1-212ENST00000474038 SOS1Q07889 1333 aaPredicted RBP19.89■□□□□ 0.77
LIMS1-212ENST00000474038 USP42Q9H9J4 1324 aaKnown RBP19.89■□□□□ 0.77
LIMS1-212ENST00000474038 ZBTB1Q9Y2K1 713 aa19.89■□□□□ 0.77
LIMS1-212ENST00000474038 APAF1O14727 1248 aa19.88■□□□□ 0.77
LIMS1-212ENST00000474038 FKBP8Q14318 412 aa19.88■□□□□ 0.77
LIMS1-212ENST00000474038 ZNF784Q8NCA9 323 aaPredicted RBP19.88■□□□□ 0.77
LIMS1-212ENST00000474038 TRIM35Q9UPQ4 493 aa19.88■□□□□ 0.77
LIMS1-212ENST00000474038 GRIN3BO60391 1043 aa19.87■□□□□ 0.77
LIMS1-212ENST00000474038 C10orf71Q711Q0 1435 aa19.86■□□□□ 0.77
LIMS1-212ENST00000474038 KIF13BQ9NQT8 1826 aa19.86■□□□□ 0.77
LIMS1-212ENST00000474038 PARP3Q9Y6F1 533 aa19.86■□□□□ 0.77
LIMS1-212ENST00000474038 LAMB4A4D0S4 1761 aa19.85■□□□□ 0.77
LIMS1-212ENST00000474038 KIAA1551Q9HCM1 1747 aa19.85■□□□□ 0.77
LIMS1-212ENST00000474038 TEX13AQ9BXU3 409 aaPredicted RBP19.85■□□□□ 0.77
LIMS1-212ENST00000474038 PXDNLA1KZ92 1463 aa19.85■□□□□ 0.77
LIMS1-212ENST00000474038 COL15A1P39059 1388 aa19.84■□□□□ 0.77
LIMS1-212ENST00000474038 STARD3NLO95772 234 aa19.84■□□□□ 0.77
LIMS1-212ENST00000474038 CANXP27824 592 aaKnown RBP19.84■□□□□ 0.77
LIMS1-212ENST00000474038 DDR1Q08345 913 aa19.84■□□□□ 0.77
LIMS1-212ENST00000474038 USPL1Q5W0Q7 1092 aa19.84■□□□□ 0.77
LIMS1-212ENST00000474038 N4BP2Q86UW6 1770 aaPredicted RBP19.84■□□□□ 0.77
LIMS1-212ENST00000474038 PRAMEF22A3QJZ6 481 aa19.83■□□□□ 0.77
LIMS1-212ENST00000474038 ZPR1O75312 459 aa19.83■□□□□ 0.77
LIMS1-212ENST00000474038 SNRPA1P09661 255 aaKnown RBP19.82■□□□□ 0.76
LIMS1-212ENST00000474038 A0A0G2JLW4 131 aa19.81■□□□□ 0.76
LIMS1-212ENST00000474038 EIF4A1P60842 406 aaKnown RBP19.81■□□□□ 0.76
LIMS1-212ENST00000474038 BABAM1Q9NWV8 329 aa19.81■□□□□ 0.76
LIMS1-212ENST00000474038 NARFQ9UHQ1 456 aa19.81■□□□□ 0.76
LIMS1-212ENST00000474038 TSPYL4Q9UJ04 414 aa19.81■□□□□ 0.76
LIMS1-212ENST00000474038 USP16Q9Y5T5 823 aa19.81■□□□□ 0.76
LIMS1-212ENST00000474038 TGFB2P61812 414 aa19.8■□□□□ 0.76
LIMS1-212ENST00000474038 POLRMTO00411 1230 aaKnown RBP19.79■□□□□ 0.76
LIMS1-212ENST00000474038 A1BGP04217 495 aa19.79■□□□□ 0.76
LIMS1-212ENST00000474038 DPEP1P16444 411 aa19.79■□□□□ 0.76
LIMS1-212ENST00000474038 TM4SF1P30408 202 aa19.79■□□□□ 0.76
LIMS1-212ENST00000474038 EIF5P55010 431 aaKnown RBP19.79■□□□□ 0.76
LIMS1-212ENST00000474038 FAM9BQ8IZU0 186 aa19.79■□□□□ 0.76
LIMS1-212ENST00000474038 BCL2L12Q9HB09 334 aa19.79■□□□□ 0.76
LIMS1-212ENST00000474038 SENP3-EIF4A1A0A087X0R7 540 aa19.78■□□□□ 0.76
LIMS1-212ENST00000474038 CHL1O00533 1208 aa19.78■□□□□ 0.76
LIMS1-212ENST00000474038 GIGYF1O75420 1035 aaPredicted RBP19.78■□□□□ 0.76
LIMS1-212ENST00000474038 NFIXQ14938 502 aa19.78■□□□□ 0.76
LIMS1-212ENST00000474038 ZNF330Q9Y3S2 320 aaPredicted RBP19.77■□□□□ 0.76
LIMS1-212ENST00000474038 LAS1LQ9Y4W2 734 aaKnown RBP19.77■□□□□ 0.76
LIMS1-212ENST00000474038 BCS1LQ9Y276 419 aa19.76■□□□□ 0.75
LIMS1-212ENST00000474038 BRCA1P38398 1863 aaKnown RBP19.75■□□□□ 0.75
LIMS1-212ENST00000474038 AFDNP55196 1824 aaKnown RBP19.75■□□□□ 0.75
LIMS1-212ENST00000474038 IL6STP40189 918 aaPredicted RBP19.75■□□□□ 0.75
LIMS1-212ENST00000474038 DIEXFQ68CQ4 756 aaKnown RBP19.75■□□□□ 0.75
LIMS1-212ENST00000474038 CFAP44Q96MT7 982 aa19.75■□□□□ 0.75
LIMS1-212ENST00000474038 A0A087WZG4 1122 aa19.74■□□□□ 0.75
LIMS1-212ENST00000474038 KCNA3P22001 575 aa19.74■□□□□ 0.75
LIMS1-212ENST00000474038 PIP4K2AP48426 406 aaPredicted RBP19.74■□□□□ 0.75
LIMS1-212ENST00000474038 CCDC27Q2M243 656 aa19.74■□□□□ 0.75
LIMS1-212ENST00000474038 TBC1D2BQ9UPU7 963 aa19.74■□□□□ 0.75
LIMS1-212ENST00000474038 BCORQ6W2J9 1755 aa19.74■□□□□ 0.75
LIMS1-212ENST00000474038 SCN7AQ01118 1682 aa19.74■□□□□ 0.75
LIMS1-212ENST00000474038 NBPF26B4DH59 902 aa19.73■□□□□ 0.75
LIMS1-212ENST00000474038 CCER2I3L3R5 266 aa19.73■□□□□ 0.75
LIMS1-212ENST00000474038 ZNF853P0CG23 659 aa19.73■□□□□ 0.75
LIMS1-212ENST00000474038 CALD1Q05682 793 aaKnown RBP19.73■□□□□ 0.75
LIMS1-212ENST00000474038 NBPF10Q6P3W6 841 aaKnown RBP19.73■□□□□ 0.75
LIMS1-212ENST00000474038 BICDL1Q6ZP65 573 aa19.73■□□□□ 0.75
LIMS1-212ENST00000474038 NBPF15Q8N660 670 aa19.73■□□□□ 0.75
LIMS1-212ENST00000474038 CHRNA5P30532 468 aa19.72■□□□□ 0.75
LIMS1-212ENST00000474038 NCBP3Q53F19 620 aaKnown RBP19.72■□□□□ 0.75
LIMS1-212ENST00000474038 IFT57Q9NWB7 429 aa19.72■□□□□ 0.75
LIMS1-212ENST00000474038 NRXN2Q9P2S2 1712 aa19.72■□□□□ 0.75
LIMS1-212ENST00000474038 ATP10DQ9P241 1426 aa19.71■□□□□ 0.75
LIMS1-212ENST00000474038 SERPINB2P05120 415 aa19.71■□□□□ 0.75
LIMS1-212ENST00000474038 GNAI1P63096 354 aa19.71■□□□□ 0.75
LIMS1-212ENST00000474038 WWC1Q8IX03 1113 aa19.71■□□□□ 0.75
LIMS1-212ENST00000474038 MBIPQ9NS73 344 aa19.71■□□□□ 0.75
LIMS1-212ENST00000474038 ADCY9O60503 1353 aa19.7■□□□□ 0.74
LIMS1-212ENST00000474038 KRT24Q2M2I5 525 aa19.7■□□□□ 0.74
LIMS1-212ENST00000474038 TBC1D9BQ66K14 1250 aa19.7■□□□□ 0.74
LIMS1-212ENST00000474038 NPM2Q86SE8 214 aaKnown RBP19.69■□□□□ 0.74
LIMS1-212ENST00000474038 PIM2Q9P1W9 311 aa19.69■□□□□ 0.74
LIMS1-212ENST00000474038 SALL2Q9Y467 1007 aaPredicted RBP19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms