RNA–Protein interactions for RNA: ENST00000473334.1

PTP4A1-203, Transcript of protein tyrosine phosphatase type IVA, member 1, humanhuman

TSL 3

Gene PTP4A1, Length 638 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1-203ENST00000473334 MAPK8IP3Q9UPT6 1336 aa29.89■■■□□ 2.38
PTP4A1-203ENST00000473334 COL15A1P39059 1388 aa29.89■■■□□ 2.37
PTP4A1-203ENST00000473334 UTRNP46939 3433 aa29.89■■■□□ 2.37
PTP4A1-203ENST00000473334 KIF13BQ9NQT8 1826 aa29.88■■■□□ 2.37
PTP4A1-203ENST00000473334 KCNQ3O43525 872 aa29.87■■■□□ 2.37
PTP4A1-203ENST00000473334 NFE2L2Q16236 605 aa29.87■■■□□ 2.37
PTP4A1-203ENST00000473334 GOLGB1Q14789 3259 aaKnown RBP29.85■■■□□ 2.37
PTP4A1-203ENST00000473334 ZPR1O75312 459 aa29.84■■■□□ 2.37
PTP4A1-203ENST00000473334 PRKRIP1Q9H875 184 aaPredicted RBP29.84■■■□□ 2.37
PTP4A1-203ENST00000473334 PARP3Q9Y6F1 533 aa29.84■■■□□ 2.37
PTP4A1-203ENST00000473334 CANXP27824 592 aaKnown RBP29.83■■■□□ 2.37
PTP4A1-203ENST00000473334 FKBP8Q14318 412 aa29.83■■■□□ 2.37
PTP4A1-203ENST00000473334 C10orf71Q711Q0 1435 aa29.82■■■□□ 2.36
PTP4A1-203ENST00000473334 TAF7Q15545 349 aaPredicted RBP29.82■■■□□ 2.36
PTP4A1-203ENST00000473334 USPL1Q5W0Q7 1092 aa29.82■■■□□ 2.36
PTP4A1-203ENST00000473334 NARFQ9UHQ1 456 aa29.82■■■□□ 2.36
PTP4A1-203ENST00000473334 YBX3P16989 372 aaKnown RBP eCLIP29.81■■■□□ 2.36
PTP4A1-203ENST00000473334 KIAA1551Q9HCM1 1747 aa29.8■■■□□ 2.36
PTP4A1-203ENST00000473334 EIF5P55010 431 aaKnown RBP29.79■■■□□ 2.36
PTP4A1-203ENST00000473334 KDM3BQ7LBC6 1761 aa29.79■■■□□ 2.36
PTP4A1-203ENST00000473334 GRIN3BO60391 1043 aa29.78■■■□□ 2.36
PTP4A1-203ENST00000473334 PXDNLA1KZ92 1463 aa29.77■■■□□ 2.36
PTP4A1-203ENST00000473334 A0A087WZG4 1122 aa29.77■■■□□ 2.36
PTP4A1-203ENST00000473334 DDR1Q08345 913 aa29.77■■■□□ 2.36
PTP4A1-203ENST00000473334 SNRPA1P09661 255 aaKnown RBP29.76■■■□□ 2.35
PTP4A1-203ENST00000473334 IL6STP40189 918 aaPredicted RBP29.76■■■□□ 2.35
PTP4A1-203ENST00000473334 WDR43Q15061 677 aaKnown RBP eCLIP29.76■■■□□ 2.35
PTP4A1-203ENST00000473334 PNISRQ8TF01 805 aaKnown RBP29.76■■■□□ 2.35
PTP4A1-203ENST00000473334 N4BP2Q86UW6 1770 aaPredicted RBP29.76■■■□□ 2.35
PTP4A1-203ENST00000473334 SCN7AQ01118 1682 aa29.76■■■□□ 2.35
PTP4A1-203ENST00000473334 TM4SF1P30408 202 aa29.75■■■□□ 2.35
PTP4A1-203ENST00000473334 TGFB2P61812 414 aa29.75■■■□□ 2.35
PTP4A1-203ENST00000473334 USP16Q9Y5T5 823 aa29.75■■■□□ 2.35
PTP4A1-203ENST00000473334 A1BGP04217 495 aa29.74■■■□□ 2.35
PTP4A1-203ENST00000473334 THUMPD2Q9BTF0 503 aaKnown RBP29.74■■■□□ 2.35
PTP4A1-203ENST00000473334 MIS18AQ9NYP9 233 aa29.74■■■□□ 2.35
PTP4A1-203ENST00000473334 LAMB4A4D0S4 1761 aa29.74■■■□□ 2.35
PTP4A1-203ENST00000473334 PRAMEF22A3QJZ6 481 aa29.73■■■□□ 2.35
PTP4A1-203ENST00000473334 POLRMTO00411 1230 aaKnown RBP29.73■■■□□ 2.35
PTP4A1-203ENST00000473334 BCL2L12Q9HB09 334 aa29.73■■■□□ 2.35
PTP4A1-203ENST00000473334 ZNF330Q9Y3S2 320 aaPredicted RBP29.73■■■□□ 2.35
PTP4A1-203ENST00000473334 RIPK4P57078 832 aa29.72■■■□□ 2.35
PTP4A1-203ENST00000473334 AFDNP55196 1824 aaKnown RBP29.71■■■□□ 2.35
PTP4A1-203ENST00000473334 TMPOP42166 694 aaKnown RBP29.71■■■□□ 2.35
PTP4A1-203ENST00000473334 NFIXQ14938 502 aa29.71■■■□□ 2.35
PTP4A1-203ENST00000473334 NPM2Q86SE8 214 aaKnown RBP29.71■■■□□ 2.35
PTP4A1-203ENST00000473334 CCDC146Q8IYE0 955 aa29.7■■■□□ 2.35
PTP4A1-203ENST00000473334 WWC3Q9ULE0 1092 aa29.7■■■□□ 2.35
PTP4A1-203ENST00000473334 NRXN2Q9P2S2 1712 aa29.7■■■□□ 2.34
PTP4A1-203ENST00000473334 ZNF316A6NFI3 1004 aaPredicted RBP29.69■■■□□ 2.34
PTP4A1-203ENST00000473334 LMOD3Q0VAK6 560 aa29.69■■■□□ 2.34
PTP4A1-203ENST00000473334 BCORQ6W2J9 1755 aa29.69■■■□□ 2.34
PTP4A1-203ENST00000473334 BRCA1P38398 1863 aaKnown RBP29.68■■■□□ 2.34
PTP4A1-203ENST00000473334 RUNDC1Q96C34 613 aa29.68■■■□□ 2.34
PTP4A1-203ENST00000473334 ADAMTS8Q9UP79 889 aa29.68■■■□□ 2.34
PTP4A1-203ENST00000473334 TBC1D2BQ9UPU7 963 aa29.68■■■□□ 2.34
PTP4A1-203ENST00000473334 A0A0G2JLW4 131 aa29.67■■■□□ 2.34
PTP4A1-203ENST00000473334 DPEP1P16444 411 aa29.66■■■□□ 2.34
PTP4A1-203ENST00000473334 PIP4K2AP48426 406 aaPredicted RBP29.65■■■□□ 2.34
PTP4A1-203ENST00000473334 EIF4A1P60842 406 aaKnown RBP29.65■■■□□ 2.34
PTP4A1-203ENST00000473334 DZIP3Q86Y13 1208 aaKnown RBP29.64■■■□□ 2.34
PTP4A1-203ENST00000473334 RRP7AQ9Y3A4 280 aaKnown RBP29.64■■■□□ 2.34
PTP4A1-203ENST00000473334 CAMTA2O94983 1202 aa29.63■■■□□ 2.33
PTP4A1-203ENST00000473334 SERPINB2P05120 415 aa29.63■■■□□ 2.33
PTP4A1-203ENST00000473334 ZNF784Q8NCA9 323 aaPredicted RBP29.63■■■□□ 2.33
PTP4A1-203ENST00000473334 GIGYF1O75420 1035 aaPredicted RBP29.62■■■□□ 2.33
PTP4A1-203ENST00000473334 TBC1D9BQ66K14 1250 aa29.62■■■□□ 2.33
PTP4A1-203ENST00000473334 BICDL1Q6ZP65 573 aa29.62■■■□□ 2.33
PTP4A1-203ENST00000473334 TSPYL4Q9UJ04 414 aa29.62■■■□□ 2.33
PTP4A1-203ENST00000473334 NBPF26B4DH59 902 aa29.61■■■□□ 2.33
PTP4A1-203ENST00000473334 NEUROD2Q15784 382 aa29.61■■■□□ 2.33
PTP4A1-203ENST00000473334 NBPF10Q6P3W6 841 aaKnown RBP29.61■■■□□ 2.33
PTP4A1-203ENST00000473334 NBPF15Q8N660 670 aa29.61■■■□□ 2.33
PTP4A1-203ENST00000473334 KCNA3P22001 575 aa29.6■■■□□ 2.33
PTP4A1-203ENST00000473334 BABAM1Q9NWV8 329 aa29.6■■■□□ 2.33
PTP4A1-203ENST00000473334 BCS1LQ9Y276 419 aa29.6■■■□□ 2.33
PTP4A1-203ENST00000473334 CARMIL3Q8ND23 1372 aa29.58■■■□□ 2.33
PTP4A1-203ENST00000473334 ARFGEF1Q9Y6D6 1849 aa29.58■■■□□ 2.33
PTP4A1-203ENST00000473334 PIM2Q9P1W9 311 aa29.57■■■□□ 2.32
PTP4A1-203ENST00000473334 CHRNA5P30532 468 aa29.56■■■□□ 2.32
PTP4A1-203ENST00000473334 TRIM35Q9UPQ4 493 aa29.56■■■□□ 2.32
PTP4A1-203ENST00000473334 DLEC1Q9Y238 1755 aa29.55■■■□□ 2.32
PTP4A1-203ENST00000473334 CLEC4GQ6UXB4 293 aa29.55■■■□□ 2.32
PTP4A1-203ENST00000473334 SETDB2Q96T68 719 aa29.54■■■□□ 2.32
PTP4A1-203ENST00000473334 ZNF652Q9Y2D9 606 aa29.54■■■□□ 2.32
PTP4A1-203ENST00000473334 ANKRD31Q8N7Z5 1873 aa29.53■■■□□ 2.32
PTP4A1-203ENST00000473334 RGL2O15211 777 aa29.52■■■□□ 2.32
PTP4A1-203ENST00000473334 DALRD3Q5D0E6 543 aaKnown RBP29.51■■■□□ 2.31
PTP4A1-203ENST00000473334 ERBB4Q15303 1308 aa29.5■■■□□ 2.31
PTP4A1-203ENST00000473334 PRR5LQ6MZQ0 368 aa29.5■■■□□ 2.31
PTP4A1-203ENST00000473334 ANP32CO43423 234 aa29.49■■■□□ 2.31
PTP4A1-203ENST00000473334 ADCY9O60503 1353 aa29.49■■■□□ 2.31
PTP4A1-203ENST00000473334 CHL1O00533 1208 aa29.48■■■□□ 2.31
PTP4A1-203ENST00000473334 CCDC184Q52MB2 194 aa29.48■■■□□ 2.31
PTP4A1-203ENST00000473334 CNBD1Q8NA66 436 aa29.48■■■□□ 2.31
PTP4A1-203ENST00000473334 APAF1O14727 1248 aa29.47■■■□□ 2.31
PTP4A1-203ENST00000473334 MYL6BP14649 208 aa29.47■■■□□ 2.31
PTP4A1-203ENST00000473334 ARHGAP27Q6ZUM4 889 aa29.47■■■□□ 2.31
PTP4A1-203ENST00000473334 C2CD5Q86YS7 1000 aa29.47■■■□□ 2.31
PTP4A1-203ENST00000473334 NGEFQ8N5V2 710 aa29.47■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms