RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 TAF7Q15545 349 aaPredicted RBP15.84■□□□□ 0.13
SYNE1-221ENST00000472563 PARP3Q9Y6F1 533 aa15.84■□□□□ 0.13
SYNE1-221ENST00000472563 MAPK8IP3Q9UPT6 1336 aa15.84■□□□□ 0.13
SYNE1-221ENST00000472563 COL5A3P25940 1745 aaPredicted RBP15.83■□□□□ 0.13
SYNE1-221ENST00000472563 USPL1Q5W0Q7 1092 aa15.83■□□□□ 0.12
SYNE1-221ENST00000472563 PRKRIP1Q9H875 184 aaPredicted RBP15.83■□□□□ 0.12
SYNE1-221ENST00000472563 COL15A1P39059 1388 aa15.83■□□□□ 0.12
SYNE1-221ENST00000472563 TJP1Q07157 1748 aa15.82■□□□□ 0.12
SYNE1-221ENST00000472563 A0A087WZG4 1122 aa15.82■□□□□ 0.12
SYNE1-221ENST00000472563 TM4SF1P30408 202 aa15.82■□□□□ 0.12
SYNE1-221ENST00000472563 TGFB2P61812 414 aa15.82■□□□□ 0.12
SYNE1-221ENST00000472563 PNISRQ8TF01 805 aaKnown RBP15.82■□□□□ 0.12
SYNE1-221ENST00000472563 SNRPA1P09661 255 aaKnown RBP15.81■□□□□ 0.12
SYNE1-221ENST00000472563 IL6STP40189 918 aaPredicted RBP15.81■□□□□ 0.12
SYNE1-221ENST00000472563 DDR1Q08345 913 aa15.81■□□□□ 0.12
SYNE1-221ENST00000472563 UTRNP46939 3433 aa15.81■□□□□ 0.12
SYNE1-221ENST00000472563 C10orf71Q711Q0 1435 aa15.8■□□□□ 0.12
SYNE1-221ENST00000472563 BCL2L12Q9HB09 334 aa15.8■□□□□ 0.12
SYNE1-221ENST00000472563 USP16Q9Y5T5 823 aa15.8■□□□□ 0.12
SYNE1-221ENST00000472563 MYH14Q7Z406 1995 aaKnown RBP15.79■□□□□ 0.12
SYNE1-221ENST00000472563 POLRMTO00411 1230 aaKnown RBP15.79■□□□□ 0.12
SYNE1-221ENST00000472563 A1BGP04217 495 aa15.79■□□□□ 0.12
SYNE1-221ENST00000472563 RIPK4P57078 832 aa15.78■□□□□ 0.12
SYNE1-221ENST00000472563 NFIXQ14938 502 aa15.78■□□□□ 0.12
SYNE1-221ENST00000472563 WDR43Q15061 677 aaKnown RBP eCLIP15.78■□□□□ 0.12
SYNE1-221ENST00000472563 THUMPD2Q9BTF0 503 aaKnown RBP15.78■□□□□ 0.12
SYNE1-221ENST00000472563 MIS18AQ9NYP9 233 aa15.78■□□□□ 0.12
SYNE1-221ENST00000472563 GOLGB1Q14789 3259 aaKnown RBP15.78■□□□□ 0.12
SYNE1-221ENST00000472563 A0A0G2JLW4 131 aa15.77■□□□□ 0.12
SYNE1-221ENST00000472563 PRAMEF22A3QJZ6 481 aa15.77■□□□□ 0.12
SYNE1-221ENST00000472563 TMPOP42166 694 aaKnown RBP15.77■□□□□ 0.12
SYNE1-221ENST00000472563 NPM2Q86SE8 214 aaKnown RBP15.77■□□□□ 0.12
SYNE1-221ENST00000472563 UBR2Q8IWV8 1755 aa15.77■□□□□ 0.11
SYNE1-221ENST00000472563 PXDNLA1KZ92 1463 aa15.77■□□□□ 0.11
SYNE1-221ENST00000472563 DPEP1P16444 411 aa15.76■□□□□ 0.11
SYNE1-221ENST00000472563 LMOD3Q0VAK6 560 aa15.76■□□□□ 0.11
SYNE1-221ENST00000472563 ADAMTS8Q9UP79 889 aa15.76■□□□□ 0.11
SYNE1-221ENST00000472563 TBC1D2BQ9UPU7 963 aa15.76■□□□□ 0.11
SYNE1-221ENST00000472563 ZNF330Q9Y3S2 320 aaPredicted RBP15.76■□□□□ 0.11
SYNE1-221ENST00000472563 ZNF784Q8NCA9 323 aaPredicted RBP15.75■□□□□ 0.11
SYNE1-221ENST00000472563 RUNDC1Q96C34 613 aa15.75■□□□□ 0.11
SYNE1-221ENST00000472563 ZNF316A6NFI3 1004 aaPredicted RBP15.74■□□□□ 0.11
SYNE1-221ENST00000472563 GIGYF1O75420 1035 aaPredicted RBP15.74■□□□□ 0.11
SYNE1-221ENST00000472563 SERPINB2P05120 415 aa15.74■□□□□ 0.11
SYNE1-221ENST00000472563 KCNA3P22001 575 aa15.74■□□□□ 0.11
SYNE1-221ENST00000472563 EIF4A1P60842 406 aaKnown RBP15.74■□□□□ 0.11
SYNE1-221ENST00000472563 BABAM1Q9NWV8 329 aa15.74■□□□□ 0.11
SYNE1-221ENST00000472563 WWC3Q9ULE0 1092 aa15.74■□□□□ 0.11
SYNE1-221ENST00000472563 SIPA1L3O60292 1781 aaPredicted RBP15.74■□□□□ 0.11
SYNE1-221ENST00000472563 C4AP0C0L4 1744 aa15.74■□□□□ 0.11
SYNE1-221ENST00000472563 NBPF26B4DH59 902 aa15.73■□□□□ 0.11
SYNE1-221ENST00000472563 CAMTA2O94983 1202 aa15.73■□□□□ 0.11
SYNE1-221ENST00000472563 NBPF10Q6P3W6 841 aaKnown RBP15.73■□□□□ 0.11
SYNE1-221ENST00000472563 DZIP3Q86Y13 1208 aaKnown RBP15.73■□□□□ 0.11
SYNE1-221ENST00000472563 CCDC146Q8IYE0 955 aa15.73■□□□□ 0.11
SYNE1-221ENST00000472563 NBPF15Q8N660 670 aa15.73■□□□□ 0.11
SYNE1-221ENST00000472563 RGL2O15211 777 aa15.72■□□□□ 0.11
SYNE1-221ENST00000472563 PIP4K2AP48426 406 aaPredicted RBP15.72■□□□□ 0.11
SYNE1-221ENST00000472563 TBC1D9BQ66K14 1250 aa15.72■□□□□ 0.11
SYNE1-221ENST00000472563 BICDL1Q6ZP65 573 aa15.72■□□□□ 0.11
SYNE1-221ENST00000472563 PIM2Q9P1W9 311 aa15.72■□□□□ 0.11
SYNE1-221ENST00000472563 BCS1LQ9Y276 419 aa15.72■□□□□ 0.11
SYNE1-221ENST00000472563 RRP7AQ9Y3A4 280 aaKnown RBP15.72■□□□□ 0.11
SYNE1-221ENST00000472563 CLEC4GQ6UXB4 293 aa15.71■□□□□ 0.11
SYNE1-221ENST00000472563 TSPYL4Q9UJ04 414 aa15.71■□□□□ 0.11
SYNE1-221ENST00000472563 NEUROD2Q15784 382 aa15.7■□□□□ 0.1
SYNE1-221ENST00000472563 TRIM35Q9UPQ4 493 aa15.7■□□□□ 0.1
SYNE1-221ENST00000472563 CHRNA5P30532 468 aa15.69■□□□□ 0.1
SYNE1-221ENST00000472563 DALRD3Q5D0E6 543 aaKnown RBP15.69■□□□□ 0.1
SYNE1-221ENST00000472563 SETDB2Q96T68 719 aa15.69■□□□□ 0.1
SYNE1-221ENST00000472563 CARMIL3Q8ND23 1372 aa15.68■□□□□ 0.1
SYNE1-221ENST00000472563 CHL1O00533 1208 aa15.68■□□□□ 0.1
SYNE1-221ENST00000472563 ZNF652Q9Y2D9 606 aa15.68■□□□□ 0.1
SYNE1-221ENST00000472563 ERBB4Q15303 1308 aa15.68■□□□□ 0.1
SYNE1-221ENST00000472563 PRR5LQ6MZQ0 368 aa15.67■□□□□ 0.1
SYNE1-221ENST00000472563 BRIP1Q9BX63 1249 aa15.67■□□□□ 0.1
SYNE1-221ENST00000472563 PDZRN3Q9UPQ7 1066 aa15.67■□□□□ 0.1
SYNE1-221ENST00000472563 VIRMAQ69YN4 1812 aaKnown RBP15.66■□□□□ 0.1
SYNE1-221ENST00000472563 ARHGAP27Q6ZUM4 889 aa15.66■□□□□ 0.1
SYNE1-221ENST00000472563 C2CD5Q86YS7 1000 aa15.66■□□□□ 0.1
SYNE1-221ENST00000472563 KIF13BQ9NQT8 1826 aa15.66■□□□□ 0.1
SYNE1-221ENST00000472563 ERVV-1B6SEH8 477 aa15.65■□□□□ 0.1
SYNE1-221ENST00000472563 H0YIN7 160 aa15.65■□□□□ 0.1
SYNE1-221ENST00000472563 CNBD1Q8NA66 436 aa15.65■□□□□ 0.1
SYNE1-221ENST00000472563 ADCY9O60503 1353 aa15.64■□□□□ 0.09
SYNE1-221ENST00000472563 APAF1O14727 1248 aa15.64■□□□□ 0.09
SYNE1-221ENST00000472563 PDE6BP35913 854 aa15.64■□□□□ 0.09
SYNE1-221ENST00000472563 KIAA1551Q9HCM1 1747 aa15.63■□□□□ 0.09
SYNE1-221ENST00000472563 ANP32CO43423 234 aa15.63■□□□□ 0.09
SYNE1-221ENST00000472563 MYL6BP14649 208 aa15.63■□□□□ 0.09
SYNE1-221ENST00000472563 HLFQ16534 295 aa15.63■□□□□ 0.09
SYNE1-221ENST00000472563 CCDC184Q52MB2 194 aa15.63■□□□□ 0.09
SYNE1-221ENST00000472563 NBPF5PQ86XG9 351 aaPredicted RBP15.63■□□□□ 0.09
SYNE1-221ENST00000472563 NGEFQ8N5V2 710 aa15.63■□□□□ 0.09
SYNE1-221ENST00000472563 TTLL6Q8N841 843 aa15.63■□□□□ 0.09
SYNE1-221ENST00000472563 NIP7Q9Y221 180 aaKnown RBP eCLIP15.63■□□□□ 0.09
SYNE1-221ENST00000472563 ATP10DQ9P241 1426 aa15.62■□□□□ 0.09
SYNE1-221ENST00000472563 NPHP1O15259 732 aa15.62■□□□□ 0.09
SYNE1-221ENST00000472563 EIF2S2P20042 333 aaKnown RBP15.62■□□□□ 0.09
SYNE1-221ENST00000472563 ST5P78524 1137 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms