RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 CCDC83Q8IWF9 413 aa15.34■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 CTCFLQ8NI51 663 aaPredicted RBP15.34■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 TERF1P54274 439 aa15.33■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 NLRP5P59047 1200 aa15.33■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 SEPT6Q14141 434 aa15.33■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 VPS36Q86VN1 386 aa15.33■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 IQCA1Q86XH1 822 aa15.33■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 MICAL3Q7RTP6 2002 aa15.33■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 PLS1Q14651 629 aa15.33■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 PRC1O43663 620 aa15.33■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 CCT2P78371 535 aaKnown RBP15.33■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 HLTFQ14527 1009 aaKnown RBP eCLIP15.33■□□□□ 0.045e-6■□□□□ 9.7
NPHP3-ACAD11-201ENST00000471702 NUP88Q99567 741 aaPredicted RBP15.33■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 TRMT112Q9UI30 125 aaKnown RBP15.33■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 PRPF31Q8WWY3 499 aaKnown RBP15.33■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 U3KPZ7 1027 aaPredicted RBP15.33■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 PANK2Q9BZ23 570 aa15.32■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 IFIT5Q13325 482 aaKnown RBP15.32■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 K7ELQ4 463 aaPredicted RBP15.32■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 OTUD6BQ8N6M0 293 aa15.32■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 SYNCQ9H7C4 482 aa15.32■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 F8W031 263 aaPredicted RBP15.32■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 SMARCA5O60264 1052 aaPredicted RBP15.32■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 PNISRQ8TF01 805 aaKnown RBP15.32■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 SMTNL1A8MU46 457 aa15.32■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 IDEP14735 1019 aa15.32■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 RBM25P49756 843 aaKnown RBP15.31■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 MCM10Q7L590 875 aa15.31■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 TMEM266Q2M3C6 531 aa15.31■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 APBB1IPQ7Z5R6 666 aaPredicted RBP15.31■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 SLC12A7Q9Y666 1083 aa15.31■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 CHD1LQ86WJ1 897 aa15.3■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 RAB11FIP4Q86YS3 637 aa15.3■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 THUMPD2Q9BTF0 503 aaKnown RBP15.3■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 CCDC8Q9H0W5 538 aaPredicted RBP15.3■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 FANCIQ9NVI1 1328 aa15.3■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 GNAT3A8MTJ3 354 aa15.3■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 KIF4BQ2VIQ3 1234 aa15.3■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 UBXN4Q92575 508 aa15.3■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 RAB34Q9BZG1 259 aa15.3■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 CASQ1P31415 396 aa15.3■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 SYCE3A1L190 88 aa15.3■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 IFIT3O14879 490 aaKnown RBP15.3■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 PPP2R1AP30153 589 aa15.3■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 MAP3K12Q12852 859 aa15.3■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 RRBP1Q9P2E9 1410 aaKnown RBP15.3■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 MTERF4Q7Z6M4 381 aaKnown RBP15.3■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 C8orf76Q96K31 380 aa15.29■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 AKAP2Q9Y2D5 859 aa15.29■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 ZNF213O14771 459 aa15.29■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 FAM212AQ96EL1 285 aa15.29■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 RNF187Q5TA31 235 aaPredicted RBP15.29■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 CCDC194A0A1B0GVG4 234 aa15.29■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 PPP1R14CQ8TAE6 165 aa15.29■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 ZBTB9Q96C00 473 aa15.29■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 KRT32Q14532 448 aa15.29■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 TRMT1Q9NXH9 659 aaKnown RBP15.29■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 TTC36A6NLP5 189 aa15.28■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 BIN1O00499 593 aa15.28■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 MYO1BO43795 1136 aa15.28■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 URI1O94763 535 aaPredicted RBP15.28■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 MTIF2P46199 727 aaKnown RBP15.28■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 MAP3K11Q16584 847 aa15.28■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 ZNF526Q8TF50 670 aaPredicted RBP15.28■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 PRPF40BQ6NWY9 871 aaKnown RBP15.28■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 ATF7IPQ6VMQ6 1270 aa15.28■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 BIN2Q9UBW5 565 aaPredicted RBP15.28■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 ATP2B3Q16720 1220 aa15.28■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 RBM26Q5T8P6 1007 aaKnown RBP15.27■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 TSNARE1Q96NA8 513 aa15.27■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 ZNF692Q9BU19 519 aaPredicted RBP15.27■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 KIF5CO60282 957 aa15.27■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 RFC4P35249 363 aa15.27■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 CETN1Q12798 172 aa15.27■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 CATIPQ7Z7H3 387 aa15.27■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 JARID2Q92833 1246 aaPredicted RBP15.27■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 PAIP2Q9BPZ3 127 aaKnown RBP15.27■□□□□ 0.04
NPHP3-ACAD11-201ENST00000471702 SLC5A1P13866 664 aa15.27■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 NBPF1Q3BBV0 1214 aa15.27■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 ZFP91Q96JP5 570 aaPredicted RBP15.27■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 ODF2LQ9ULJ1 636 aa15.27■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 RTEL1-TNFRSF6BF6WH68 1400 aa15.27■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 STX8Q9UNK0 236 aa15.27■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 TSPY2A6NKD2 308 aa15.27■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 FOXO3O43524 673 aa15.27■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 SRRTQ9BXP5 876 aaKnown RBP15.27■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 POLR3GO15318 223 aaPredicted RBP15.26■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 SATB1Q01826 763 aa15.26■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 EHMT1Q9H9B1 1298 aa15.26■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 BAG4O95429 457 aaKnown RBP15.26■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 CNNM3Q8NE01 707 aa15.26■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 ZBTB3Q9H5J0 574 aa15.26■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 FSD2A1L4K1 749 aa15.26■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 HAND2P61296 217 aa15.26■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 SSRP1Q08945 709 aaKnown RBP15.26■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 AKNAD1Q5T1N1 836 aa15.26■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 CCDC196A0A1B0GTZ2 297 aa15.26■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 GCOM1H8Y6P7 765 aaPredicted RBP15.26■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 MYZAPP0CAP1 466 aa15.26■□□□□ 0.03
NPHP3-ACAD11-201ENST00000471702 TOP1P11387 765 aaKnown RBP15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms