RNA–Protein interactions for RNA: ENST00000470953.1

VARS-222, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 392 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-222ENST00000470953 HACL1Q9UJ83 578 aa8.53□□□□□ -1.04
VARS-222ENST00000470953 LAMA3Q16787 3333 aa8.53□□□□□ -1.04
VARS-222ENST00000470953 FER1L6Q2WGJ9 1857 aa8.53□□□□□ -1.04
VARS-222ENST00000470953 TRAPPC3LQ5T215 181 aa8.52□□□□□ -1.05
VARS-222ENST00000470953 ZCRB1Q8TBF4 217 aaKnown RBP8.52□□□□□ -1.05
VARS-222ENST00000470953 H0YGN5 161 aa8.51□□□□□ -1.05
VARS-222ENST00000470953 CCDC24Q8N4L8 307 aa8.51□□□□□ -1.05
VARS-222ENST00000470953 ARHGEF1Q92888 912 aaKnown RBP8.51□□□□□ -1.05
VARS-222ENST00000470953 LTV1Q96GA3 475 aaPredicted RBP8.51□□□□□ -1.05
VARS-222ENST00000470953 SAGE1Q9NXZ1 904 aa8.51□□□□□ -1.05
VARS-222ENST00000470953 RNF123Q5XPI4 1314 aa8.51□□□□□ -1.05
VARS-222ENST00000470953 LTN1O94822 1766 aa8.5□□□□□ -1.05
VARS-222ENST00000470953 PAPPA2Q9BXP8 1791 aa8.5□□□□□ -1.05
VARS-222ENST00000470953 LOC102724428A0A0B4J2F2 783 aa8.5□□□□□ -1.05
VARS-222ENST00000470953 TRPA1O75762 1119 aa8.5□□□□□ -1.05
VARS-222ENST00000470953 SIK1P57059 783 aa8.5□□□□□ -1.05
VARS-222ENST00000470953 PNMA8AQ86V59 439 aaPredicted RBP8.5□□□□□ -1.05
VARS-222ENST00000470953 TTLL6Q8N841 843 aa8.5□□□□□ -1.05
VARS-222ENST00000470953 ZNF541Q9H0D2 1346 aa8.5□□□□□ -1.05
VARS-222ENST00000470953 ITGB4P16144 1822 aa8.5□□□□□ -1.05
VARS-222ENST00000470953 FAM208AQ9UK61 1670 aaKnown RBP8.49□□□□□ -1.05
VARS-222ENST00000470953 AKAP4Q5JQC9 854 aa8.49□□□□□ -1.05
VARS-222ENST00000470953 NME9Q86XW9 330 aa8.49□□□□□ -1.05
VARS-222ENST00000470953 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.49□□□□□ -1.05
VARS-222ENST00000470953 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.49□□□□□ -1.05
VARS-222ENST00000470953 SMARCC1Q92922 1105 aaPredicted RBP8.49□□□□□ -1.05
VARS-222ENST00000470953 RNF186Q9NXI6 227 aa8.49□□□□□ -1.05
VARS-222ENST00000470953 RTCBQ9Y3I0 505 aaKnown RBP8.49□□□□□ -1.05
VARS-222ENST00000470953 ERBB4Q15303 1308 aa8.49□□□□□ -1.05
VARS-222ENST00000470953 TTC21AQ8NDW8 1320 aa8.49□□□□□ -1.05
VARS-222ENST00000470953 SOX1O00570 391 aaPredicted RBP8.48□□□□□ -1.05
VARS-222ENST00000470953 NOGQ13253 232 aa8.48□□□□□ -1.05
VARS-222ENST00000470953 FKBP8Q14318 412 aa8.48□□□□□ -1.05
VARS-222ENST00000470953 PKN2Q16513 984 aaKnown RBP8.48□□□□□ -1.05
VARS-222ENST00000470953 SYNE4Q8N205 404 aa8.48□□□□□ -1.05
VARS-222ENST00000470953 LRCH3Q96II8 777 aa8.48□□□□□ -1.05
VARS-222ENST00000470953 MUC3AQ02505 3323 aa8.48□□□□□ -1.05
VARS-222ENST00000470953 CENPJQ9HC77 1338 aaPredicted RBP8.48□□□□□ -1.05
VARS-222ENST00000470953 CENPFP49454 3210 aa8.48□□□□□ -1.05
VARS-222ENST00000470953 INSRP06213 1382 aa8.48□□□□□ -1.05
VARS-222ENST00000470953 HTTP42858 3142 aa8.47□□□□□ -1.05
VARS-222ENST00000470953 POLRMTO00411 1230 aaKnown RBP8.47□□□□□ -1.05
VARS-222ENST00000470953 C21orf2O43822 256 aa8.47□□□□□ -1.05
VARS-222ENST00000470953 RFC4P35249 363 aa8.47□□□□□ -1.05
VARS-222ENST00000470953 HHIPL1Q96JK4 782 aa8.47□□□□□ -1.05
VARS-222ENST00000470953 ZNF692Q9BU19 519 aaPredicted RBP8.47□□□□□ -1.05
VARS-222ENST00000470953 USP31Q70CQ4 1352 aa8.47□□□□□ -1.05
VARS-222ENST00000470953 RGPD2P0DJD1 1756 aa8.46□□□□□ -1.05
VARS-222ENST00000470953 RBBP6Q7Z6E9 1792 aaKnown RBP8.46□□□□□ -1.05
VARS-222ENST00000470953 CELF2O95319 508 aaKnown RBP8.46□□□□□ -1.06
VARS-222ENST00000470953 FBLN1P23142 703 aa8.46□□□□□ -1.06
VARS-222ENST00000470953 ATP6V1AP38606 617 aa8.46□□□□□ -1.06
VARS-222ENST00000470953 IP6K1Q92551 441 aa8.46□□□□□ -1.06
VARS-222ENST00000470953 TAOK3Q9H2K8 898 aa8.46□□□□□ -1.06
VARS-222ENST00000470953 SRP68Q9UHB9 627 aaKnown RBP8.46□□□□□ -1.06
VARS-222ENST00000470953 LTBP3Q9NS15 1303 aa8.46□□□□□ -1.06
VARS-222ENST00000470953 KTN1Q86UP2 1357 aaKnown RBP8.46□□□□□ -1.06
VARS-222ENST00000470953 AKAP11Q9UKA4 1901 aa8.45□□□□□ -1.06
VARS-222ENST00000470953 EN2P19622 333 aaPredicted RBP8.45□□□□□ -1.06
VARS-222ENST00000470953 FBXO46Q6PJ61 603 aaPredicted RBP8.45□□□□□ -1.06
VARS-222ENST00000470953 USHBP1Q8N6Y0 703 aa8.45□□□□□ -1.06
VARS-222ENST00000470953 PIGBQ92521 554 aa8.45□□□□□ -1.06
VARS-222ENST00000470953 HDAC9Q9UKV0 1011 aa8.45□□□□□ -1.06
VARS-222ENST00000470953 AFDNP55196 1824 aaKnown RBP8.45□□□□□ -1.06
VARS-222ENST00000470953 FAM155AB1AL88 458 aaPredicted RBP8.44□□□□□ -1.06
VARS-222ENST00000470953 ADRA2BP18089 450 aa8.44□□□□□ -1.06
VARS-222ENST00000470953 KIF23Q02241 960 aaPredicted RBP8.44□□□□□ -1.06
VARS-222ENST00000470953 BICDL1Q6ZP65 573 aa8.44□□□□□ -1.06
VARS-222ENST00000470953 C2CD5Q86YS7 1000 aa8.44□□□□□ -1.06
VARS-222ENST00000470953 STXBP5LQ9Y2K9 1186 aa8.44□□□□□ -1.06
VARS-222ENST00000470953 NBPF6Q5VWK0 638 aa8.43□□□□□ -1.06
VARS-222ENST00000470953 ZNF296Q8WUU4 475 aaPredicted RBP8.43□□□□□ -1.06
VARS-222ENST00000470953 NBPF4Q96M43 638 aa8.43□□□□□ -1.06
VARS-222ENST00000470953 STAC3Q96MF2 364 aa8.43□□□□□ -1.06
VARS-222ENST00000470953 SBNO2Q9Y2G9 1366 aa8.43□□□□□ -1.06
VARS-222ENST00000470953 NRXN2Q9P2S2 1712 aa8.43□□□□□ -1.06
VARS-222ENST00000470953 CYP27B1O15528 508 aa8.42□□□□□ -1.06
VARS-222ENST00000470953 TM4SF1P30408 202 aa8.42□□□□□ -1.06
VARS-222ENST00000470953 PRO3102Q9H379 93 aa8.42□□□□□ -1.06
VARS-222ENST00000470953 ZNF408Q9H9D4 720 aa8.42□□□□□ -1.06
VARS-222ENST00000470953 ASAP1Q9ULH1 1129 aa8.42□□□□□ -1.06
VARS-222ENST00000470953 CARMIL3Q8ND23 1372 aa8.42□□□□□ -1.06
VARS-222ENST00000470953 KIAA0100Q14667 2235 aaKnown RBP8.42□□□□□ -1.06
VARS-222ENST00000470953 COL5A3P25940 1745 aaPredicted RBP8.41□□□□□ -1.06
VARS-222ENST00000470953 CD163L1Q9NR16 1453 aa8.41□□□□□ -1.06
VARS-222ENST00000470953 SMG6Q86US8 1419 aaKnown RBP8.41□□□□□ -1.06
VARS-222ENST00000470953 RAB3GAP2Q9H2M9 1393 aa8.41□□□□□ -1.06
VARS-222ENST00000470953 EVC2Q86UK5 1308 aa8.41□□□□□ -1.06
VARS-222ENST00000470953 H0YIN7 160 aa8.41□□□□□ -1.06
VARS-222ENST00000470953 RPS6KA4O75676 772 aa8.41□□□□□ -1.06
VARS-222ENST00000470953 HOXC9P31274 260 aa8.41□□□□□ -1.06
VARS-222ENST00000470953 Q7L0L9 218 aa8.41□□□□□ -1.06
VARS-222ENST00000470953 COL11A2P13942 1736 aaPredicted RBP8.4□□□□□ -1.06
VARS-222ENST00000470953 MON2Q7Z3U7 1717 aa8.4□□□□□ -1.06
VARS-222ENST00000470953 TTC28Q96AY4 2481 aa8.4□□□□□ -1.06
VARS-222ENST00000470953 MAP3K19Q56UN5 1328 aa8.4□□□□□ -1.06
VARS-222ENST00000470953 USP42Q9H9J4 1324 aaKnown RBP8.4□□□□□ -1.06
VARS-222ENST00000470953 ZNF622Q969S3 477 aaKnown RBP eCLIP8.4□□□□□ -1.06
VARS-222ENST00000470953 SLC4A9Q96Q91 983 aa8.4□□□□□ -1.06
VARS-222ENST00000470953 MYH14Q7Z406 1995 aaKnown RBP8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms