RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 HEG1Q9ULI3 1381 aa21.84■■□□□ 1.09
COL9A3-208ENST00000469802 ZNF790Q6PG37 636 aa21.83■■□□□ 1.09
COL9A3-208ENST00000469802 TTC5Q8N0Z6 440 aa21.83■■□□□ 1.09
COL9A3-208ENST00000469802 BCORQ6W2J9 1755 aa21.83■■□□□ 1.09
COL9A3-208ENST00000469802 FCHSD2O94868 740 aa21.82■■□□□ 1.08
COL9A3-208ENST00000469802 U2AF1L5P0DN76 240 aaPredicted RBP21.82■■□□□ 1.08
COL9A3-208ENST00000469802 U2AF1Q01081 240 aaKnown RBP eCLIP21.82■■□□□ 1.08
COL9A3-208ENST00000469802 ZNF496Q96IT1 587 aaPredicted RBP21.82■■□□□ 1.08
COL9A3-208ENST00000469802 WWC3Q9ULE0 1092 aa21.82■■□□□ 1.08
COL9A3-208ENST00000469802 ATP10DQ9P241 1426 aa21.81■■□□□ 1.08
COL9A3-208ENST00000469802 LAMB4A4D0S4 1761 aa21.8■■□□□ 1.08
COL9A3-208ENST00000469802 TM4SF1P30408 202 aa21.8■■□□□ 1.08
COL9A3-208ENST00000469802 USPL1Q5W0Q7 1092 aa21.8■■□□□ 1.08
COL9A3-208ENST00000469802 NARFQ9UHQ1 456 aa21.8■■□□□ 1.08
COL9A3-208ENST00000469802 KDM3BQ7LBC6 1761 aa21.79■■□□□ 1.08
COL9A3-208ENST00000469802 POLRMTO00411 1230 aaKnown RBP21.79■■□□□ 1.08
COL9A3-208ENST00000469802 ZPR1O75312 459 aa21.79■■□□□ 1.08
COL9A3-208ENST00000469802 A0A0G2JLW4 131 aa21.78■■□□□ 1.08
COL9A3-208ENST00000469802 STARD3NLO95772 234 aa21.78■■□□□ 1.08
COL9A3-208ENST00000469802 DPEP1P16444 411 aa21.78■■□□□ 1.08
COL9A3-208ENST00000469802 BCL2L12Q9HB09 334 aa21.78■■□□□ 1.08
COL9A3-208ENST00000469802 ANKRD31Q8N7Z5 1873 aa21.77■■□□□ 1.08
COL9A3-208ENST00000469802 KCNA3P22001 575 aa21.76■■□□□ 1.07
COL9A3-208ENST00000469802 EIF5P55010 431 aaKnown RBP21.76■■□□□ 1.07
COL9A3-208ENST00000469802 FMNL2Q96PY5 1086 aa21.76■■□□□ 1.07
COL9A3-208ENST00000469802 TEX13AQ9BXU3 409 aaPredicted RBP21.76■■□□□ 1.07
COL9A3-208ENST00000469802 KCNQ3O43525 872 aa21.75■■□□□ 1.07
COL9A3-208ENST00000469802 NFIXQ14938 502 aa21.75■■□□□ 1.07
COL9A3-208ENST00000469802 BTBD11A6QL63 1104 aa21.74■■□□□ 1.07
COL9A3-208ENST00000469802 HTATSF1O43719 755 aaKnown RBP21.74■■□□□ 1.07
COL9A3-208ENST00000469802 CANXP27824 592 aaKnown RBP21.74■■□□□ 1.07
COL9A3-208ENST00000469802 GIGYF1O75420 1035 aaPredicted RBP21.73■■□□□ 1.07
COL9A3-208ENST00000469802 C1QTNF8P60827 252 aa21.73■■□□□ 1.07
COL9A3-208ENST00000469802 MCM10Q7L590 875 aa21.73■■□□□ 1.07
COL9A3-208ENST00000469802 BCS1LQ9Y276 419 aa21.73■■□□□ 1.07
COL9A3-208ENST00000469802 SBF1O95248 1867 aa21.73■■□□□ 1.07
COL9A3-208ENST00000469802 COL11A2P13942 1736 aaPredicted RBP21.72■■□□□ 1.07
COL9A3-208ENST00000469802 RTF1Q92541 710 aaKnown RBP21.72■■□□□ 1.07
COL9A3-208ENST00000469802 A0A087WZG4 1122 aa21.71■■□□□ 1.07
COL9A3-208ENST00000469802 IL6STP40189 918 aaPredicted RBP21.71■■□□□ 1.07
COL9A3-208ENST00000469802 PLEKHF1Q96S99 279 aa21.71■■□□□ 1.07
COL9A3-208ENST00000469802 DCTN1Q14203 1278 aa21.7■■□□□ 1.06
COL9A3-208ENST00000469802 PIM2Q9P1W9 311 aa21.69■■□□□ 1.06
COL9A3-208ENST00000469802 CARMIL3Q8ND23 1372 aa21.69■■□□□ 1.06
COL9A3-208ENST00000469802 CHRNA5P30532 468 aa21.68■■□□□ 1.06
COL9A3-208ENST00000469802 A1BGP04217 495 aa21.67■■□□□ 1.06
COL9A3-208ENST00000469802 SERPINB2P05120 415 aa21.67■■□□□ 1.06
COL9A3-208ENST00000469802 ARFGEF2Q9Y6D5 1785 aa21.66■■□□□ 1.06
COL9A3-208ENST00000469802 PRAMEF22A3QJZ6 481 aa21.66■■□□□ 1.06
COL9A3-208ENST00000469802 RALBP1Q15311 655 aa21.66■■□□□ 1.06
COL9A3-208ENST00000469802 DALRD3Q5D0E6 543 aaKnown RBP21.66■■□□□ 1.06
COL9A3-208ENST00000469802 USP16Q9Y5T5 823 aa21.66■■□□□ 1.06
COL9A3-208ENST00000469802 CAMTA2O94983 1202 aa21.65■■□□□ 1.06
COL9A3-208ENST00000469802 SNRPA1P09661 255 aaKnown RBP21.65■■□□□ 1.06
COL9A3-208ENST00000469802 TBC1D9BQ66K14 1250 aa21.65■■□□□ 1.06
COL9A3-208ENST00000469802 GPBP1L1Q9HC44 474 aaPredicted RBP21.65■■□□□ 1.06
COL9A3-208ENST00000469802 CACNA1SQ13698 1873 aa21.64■■□□□ 1.06
COL9A3-208ENST00000469802 TAF7Q15545 349 aaPredicted RBP21.64■■□□□ 1.05
COL9A3-208ENST00000469802 ARHGAP27Q6ZUM4 889 aa21.64■■□□□ 1.05
COL9A3-208ENST00000469802 TBC1D2BQ9UPU7 963 aa21.64■■□□□ 1.05
COL9A3-208ENST00000469802 CCDC88AQ3V6T2 1871 aa21.63■■□□□ 1.05
COL9A3-208ENST00000469802 NEFMP07197 916 aa21.63■■□□□ 1.05
COL9A3-208ENST00000469802 NFE2L2Q16236 605 aa21.63■■□□□ 1.05
COL9A3-208ENST00000469802 ZNF330Q9Y3S2 320 aaPredicted RBP21.63■■□□□ 1.05
COL9A3-208ENST00000469802 BICDL1Q6ZP65 573 aa21.62■■□□□ 1.05
COL9A3-208ENST00000469802 TIAM2Q8IVF5 1701 aa21.62■■□□□ 1.05
COL9A3-208ENST00000469802 ZNF526Q8TF50 670 aaPredicted RBP21.61■■□□□ 1.05
COL9A3-208ENST00000469802 FER1L6Q2WGJ9 1857 aa21.6■■□□□ 1.05
COL9A3-208ENST00000469802 NUP98P52948 1817 aa21.6■■□□□ 1.05
COL9A3-208ENST00000469802 NBPF26B4DH59 902 aa21.6■■□□□ 1.05
COL9A3-208ENST00000469802 PIP4K2AP48426 406 aaPredicted RBP21.6■■□□□ 1.05
COL9A3-208ENST00000469802 NBPF10Q6P3W6 841 aaKnown RBP21.6■■□□□ 1.05
COL9A3-208ENST00000469802 DZIP3Q86Y13 1208 aaKnown RBP21.6■■□□□ 1.05
COL9A3-208ENST00000469802 NBPF15Q8N660 670 aa21.6■■□□□ 1.05
COL9A3-208ENST00000469802 TNRC6CQ9HCJ0 1690 aaKnown RBP21.6■■□□□ 1.05
COL9A3-208ENST00000469802 MYBBP1AQ9BQG0 1328 aaKnown RBP21.59■■□□□ 1.05
COL9A3-208ENST00000469802 MAPK8IP3Q9UPT6 1336 aa21.59■■□□□ 1.05
COL9A3-208ENST00000469802 DDX10Q13206 875 aaKnown RBP21.59■■□□□ 1.05
COL9A3-208ENST00000469802 PRR5LQ6MZQ0 368 aa21.59■■□□□ 1.05
COL9A3-208ENST00000469802 PNNQ9H307 717 aaKnown RBP21.59■■□□□ 1.05
COL9A3-208ENST00000469802 SENP3-EIF4A1A0A087X0R7 540 aa21.58■■□□□ 1.05
COL9A3-208ENST00000469802 NPM2Q86SE8 214 aaKnown RBP21.58■■□□□ 1.05
COL9A3-208ENST00000469802 PNISRQ8TF01 805 aaKnown RBP21.58■■□□□ 1.05
COL9A3-208ENST00000469802 MIS18AQ9NYP9 233 aa21.58■■□□□ 1.05
COL9A3-208ENST00000469802 DICER1Q9UPY3 1922 aaKnown RBP21.57■■□□□ 1.04
COL9A3-208ENST00000469802 KIF3CO14782 793 aa21.57■■□□□ 1.04
COL9A3-208ENST00000469802 RGL2O15211 777 aa21.57■■□□□ 1.04
COL9A3-208ENST00000469802 C2CD5Q86YS7 1000 aa21.57■■□□□ 1.04
COL9A3-208ENST00000469802 THUMPD2Q9BTF0 503 aaKnown RBP21.57■■□□□ 1.04
COL9A3-208ENST00000469802 C9orf131Q5VYM1 1079 aa21.56■■□□□ 1.04
COL9A3-208ENST00000469802 CLEC4GQ6UXB4 293 aa21.56■■□□□ 1.04
COL9A3-208ENST00000469802 BRIP1Q9BX63 1249 aa21.56■■□□□ 1.04
COL9A3-208ENST00000469802 SLX4Q8IY92 1834 aa21.55■■□□□ 1.04
COL9A3-208ENST00000469802 TTLL6Q8N841 843 aa21.55■■□□□ 1.04
COL9A3-208ENST00000469802 SETDB2Q96T68 719 aa21.55■■□□□ 1.04
COL9A3-208ENST00000469802 PDZRN3Q9UPQ7 1066 aa21.55■■□□□ 1.04
COL9A3-208ENST00000469802 H0YIN7 160 aa21.54■■□□□ 1.04
COL9A3-208ENST00000469802 EIF4A1P60842 406 aaKnown RBP21.54■■□□□ 1.04
COL9A3-208ENST00000469802 CNBD1Q8NA66 436 aa21.54■■□□□ 1.04
COL9A3-208ENST00000469802 PDE6BP35913 854 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 137 ms