RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 MAP3K2Q9Y2U5 619 aa23.37■■□□□ 1.33
VIM-203ENST00000469543 GIGYF1O75420 1035 aaPredicted RBP23.37■■□□□ 1.33
VIM-203ENST00000469543 BAG4O95429 457 aaKnown RBP23.36■■□□□ 1.33
VIM-203ENST00000469543 UPF3BQ9BZI7 483 aaKnown RBP23.36■■□□□ 1.33
VIM-203ENST00000469543 NPHP4O75161 1426 aaPredicted RBP23.36■■□□□ 1.33
VIM-203ENST00000469543 ST18O60284 1047 aa23.36■■□□□ 1.33
VIM-203ENST00000469543 PA2G4Q9UQ80 394 aaKnown RBP23.36■■□□□ 1.33
VIM-203ENST00000469543 L1TD1Q5T7N2 865 aaKnown RBP23.35■■□□□ 1.33
VIM-203ENST00000469543 PIP4K2AP48426 406 aaPredicted RBP23.35■■□□□ 1.33
VIM-203ENST00000469543 POLA2Q14181 598 aa23.35■■□□□ 1.33
VIM-203ENST00000469543 MCTP1Q6DN14 999 aa23.35■■□□□ 1.33
VIM-203ENST00000469543 STAP2Q9UGK3 403 aa23.35■■□□□ 1.33
VIM-203ENST00000469543 DBF4Q9UBU7 674 aaPredicted RBP23.34■■□□□ 1.33
VIM-203ENST00000469543 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.34■■□□□ 1.33
VIM-203ENST00000469543 USP54Q70EL1 1684 aa23.33■■□□□ 1.33
VIM-203ENST00000469543 AMOTQ4VCS5 1084 aa23.33■■□□□ 1.33
VIM-203ENST00000469543 ZDHHC9Q9Y397 364 aa23.33■■□□□ 1.33
VIM-203ENST00000469543 PI4K2BQ8TCG2 481 aa23.32■■□□□ 1.32
VIM-203ENST00000469543 NLRP2Q9NX02 1062 aa23.32■■□□□ 1.32
VIM-203ENST00000469543 CACNA1FO60840 1977 aa23.32■■□□□ 1.32
VIM-203ENST00000469543 C9orf78Q9NZ63 289 aaPredicted RBP23.32■■□□□ 1.32
VIM-203ENST00000469543 DTNBO60941 627 aa23.31■■□□□ 1.32
VIM-203ENST00000469543 TMX3Q96JJ7 454 aa23.31■■□□□ 1.32
VIM-203ENST00000469543 LARP6Q9BRS8 491 aaKnown RBP23.31■■□□□ 1.32
VIM-203ENST00000469543 CHRNA2Q15822 529 aa23.31■■□□□ 1.32
VIM-203ENST00000469543 OS9Q13438 667 aaPredicted RBP23.3■■□□□ 1.32
VIM-203ENST00000469543 NFATC2IPQ8NCF5 419 aa23.3■■□□□ 1.32
VIM-203ENST00000469543 MYL6BP14649 208 aa23.3■■□□□ 1.32
VIM-203ENST00000469543 JARID2Q92833 1246 aaPredicted RBP23.29■■□□□ 1.32
VIM-203ENST00000469543 GRPEL1Q9HAV7 217 aa23.29■■□□□ 1.32
VIM-203ENST00000469543 DDX49Q9Y6V7 483 aaKnown RBP23.29■■□□□ 1.32
VIM-203ENST00000469543 ERBB3P21860 1342 aa23.29■■□□□ 1.32
VIM-203ENST00000469543 CYP2E1P05181 493 aaPredicted RBP23.28■■□□□ 1.32
VIM-203ENST00000469543 HOXB7P09629 217 aa23.28■■□□□ 1.32
VIM-203ENST00000469543 NCLP19338 710 aaKnown RBP23.28■■□□□ 1.32
VIM-203ENST00000469543 MED1Q15648 1581 aaPredicted RBP23.28■■□□□ 1.32
VIM-203ENST00000469543 CWC27Q6UX04 472 aaKnown RBP23.28■■□□□ 1.32
VIM-203ENST00000469543 FOXD4L6Q3SYB3 417 aaPredicted RBP23.27■■□□□ 1.32
VIM-203ENST00000469543 FOXD4L3Q6VB84 417 aaPredicted RBP23.27■■□□□ 1.32
VIM-203ENST00000469543 KIF1BPQ96EK5 621 aa23.27■■□□□ 1.32
VIM-203ENST00000469543 SPG7Q9UQ90 795 aa23.27■■□□□ 1.32
VIM-203ENST00000469543 PXDNLA1KZ92 1463 aa23.27■■□□□ 1.32
VIM-203ENST00000469543 EIF5BO60841 1220 aaKnown RBP23.27■■□□□ 1.32
VIM-203ENST00000469543 KLHDC4Q8TBB5 520 aa23.27■■□□□ 1.32
VIM-203ENST00000469543 C19orf44Q9H6X5 657 aa23.27■■□□□ 1.32
VIM-203ENST00000469543 RRAGDQ9NQL2 400 aaPredicted RBP23.27■■□□□ 1.32
VIM-203ENST00000469543 KSR2Q6VAB6 950 aa23.26■■□□□ 1.31
VIM-203ENST00000469543 RAB11FIP3O75154 756 aa23.26■■□□□ 1.31
VIM-203ENST00000469543 PDIA6Q15084 440 aa23.26■■□□□ 1.31
VIM-203ENST00000469543 KAZALD1Q96I82 304 aa23.26■■□□□ 1.31
VIM-203ENST00000469543 KDM3BQ7LBC6 1761 aa23.25■■□□□ 1.31
VIM-203ENST00000469543 RGPD5Q99666 1765 aa23.25■■□□□ 1.31
VIM-203ENST00000469543 PRPF40AO75400 957 aaKnown RBP23.25■■□□□ 1.31
VIM-203ENST00000469543 NUCB2P80303 420 aa23.25■■□□□ 1.31
VIM-203ENST00000469543 MRE11P49959 708 aa23.24■■□□□ 1.31
VIM-203ENST00000469543 SIL1Q9H173 461 aa23.24■■□□□ 1.31
VIM-203ENST00000469543 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.24■■□□□ 1.31
VIM-203ENST00000469543 C1orf167Q5SNV9 1468 aa23.24■■□□□ 1.31
VIM-203ENST00000469543 TUBGCP6Q96RT7 1819 aa23.23■■□□□ 1.31
VIM-203ENST00000469543 CPA1P15085 419 aa23.23■■□□□ 1.31
VIM-203ENST00000469543 ZNF790Q6PG37 636 aa23.23■■□□□ 1.31
VIM-203ENST00000469543 CLEC17AQ6ZS10 378 aa23.23■■□□□ 1.31
VIM-203ENST00000469543 RASEFQ8IZ41 740 aa23.23■■□□□ 1.31
VIM-203ENST00000469543 RAPGEF4Q8WZA2 1011 aa23.23■■□□□ 1.31
VIM-203ENST00000469543 SUCLG2Q96I99 432 aa23.23■■□□□ 1.31
VIM-203ENST00000469543 CSB-PGBD3P0DP91 1061 aa23.23■■□□□ 1.31
VIM-203ENST00000469543 LMBRD1Q9NUN5 540 aa23.23■■□□□ 1.31
VIM-203ENST00000469543 GOLGA6L22H0YM25 854 aa23.22■■□□□ 1.31
VIM-203ENST00000469543 SKOR2Q2VWA4 1001 aaPredicted RBP23.22■■□□□ 1.31
VIM-203ENST00000469543 BICC1Q9H694 974 aaKnown RBP23.22■■□□□ 1.31
VIM-203ENST00000469543 ANO8Q9HCE9 1232 aaPredicted RBP23.22■■□□□ 1.31
VIM-203ENST00000469543 HEG1Q9ULI3 1381 aa23.22■■□□□ 1.31
VIM-203ENST00000469543 CAVIN1Q6NZI2 390 aaKnown RBP23.21■■□□□ 1.31
VIM-203ENST00000469543 DDX54Q8TDD1 881 aaKnown RBP23.21■■□□□ 1.31
VIM-203ENST00000469543 NSFL1CQ9UNZ2 370 aaKnown RBP23.21■■□□□ 1.31
VIM-203ENST00000469543 USP16Q9Y5T5 823 aa23.21■■□□□ 1.31
VIM-203ENST00000469543 ZNF142P52746 1687 aaPredicted RBP23.21■■□□□ 1.31
VIM-203ENST00000469543 IGKV5-2P06315 115 aa23.21■■□□□ 1.31
VIM-203ENST00000469543 ZNF496Q96IT1 587 aaPredicted RBP23.21■■□□□ 1.31
VIM-203ENST00000469543 CWC22Q9HCG8 908 aaKnown RBP23.21■■□□□ 1.31
VIM-203ENST00000469543 LMO7Q8WWI1 1683 aa23.21■■□□□ 1.31
VIM-203ENST00000469543 MCCP23508 829 aa23.2■■□□□ 1.3
VIM-203ENST00000469543 SGSM2O43147 1006 aa23.2■■□□□ 1.3
VIM-203ENST00000469543 ATF3P18847 181 aa23.2■■□□□ 1.3
VIM-203ENST00000469543 RBM27Q9P2N5 1060 aaKnown RBP23.2■■□□□ 1.3
VIM-203ENST00000469543 RIC3Q7Z5B4 369 aa23.19■■□□□ 1.3
VIM-203ENST00000469543 CCDC8Q9H0W5 538 aaPredicted RBP23.19■■□□□ 1.3
VIM-203ENST00000469543 SLIT3O75094 1523 aa23.19■■□□□ 1.3
VIM-203ENST00000469543 ADAMTSL3P82987 1691 aa23.19■■□□□ 1.3
VIM-203ENST00000469543 GRM8O00222 908 aa23.19■■□□□ 1.3
VIM-203ENST00000469543 HSPA4P34932 840 aa23.19■■□□□ 1.3
VIM-203ENST00000469543 KLHL40Q2TBA0 621 aa23.19■■□□□ 1.3
VIM-203ENST00000469543 COPS6Q7L5N1 327 aa23.19■■□□□ 1.3
VIM-203ENST00000469543 CLASRPQ8N2M8 674 aaKnown RBP23.18■■□□□ 1.3
VIM-203ENST00000469543 FAM43AQ8N2R8 423 aa23.18■■□□□ 1.3
VIM-203ENST00000469543 SLC52A2Q9HAB3 445 aa23.18■■□□□ 1.3
VIM-203ENST00000469543 DDX21Q9NR30 783 aaKnown RBP eCLIP23.18■■□□□ 1.3
VIM-203ENST00000469543 HYPKQ9NX55 129 aa23.18■■□□□ 1.3
VIM-203ENST00000469543 TLR7Q9NYK1 1049 aaKnown RBP23.18■■□□□ 1.3
VIM-203ENST00000469543 NPHP3Q7Z494 1330 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms