RNA–Protein interactions for RNA: ENST00000467273.5

PTCD3-207, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 757 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-207ENST00000467273 CDK12Q9NYV4 1490 aaPredicted RBP8.77□□□□□ -1
PTCD3-207ENST00000467273 EIF2AK4Q9P2K8 1649 aaKnown RBP8.77□□□□□ -1.01
PTCD3-207ENST00000467273 ZNF772Q68DY9 489 aaPredicted RBP8.77□□□□□ -1.01
PTCD3-207ENST00000467273 VASH1Q7L8A9 365 aaPredicted RBP8.77□□□□□ -1.01
PTCD3-207ENST00000467273 TBC1D2Q9BYX2 928 aa8.77□□□□□ -1.01
PTCD3-207ENST00000467273 ZBTB3Q9H5J0 574 aa8.77□□□□□ -1.01
PTCD3-207ENST00000467273 MTUS2Q5JR59 1369 aa8.76□□□□□ -1.01
PTCD3-207ENST00000467273 ABCC3O15438 1527 aa8.76□□□□□ -1.01
PTCD3-207ENST00000467273 KDM5AP29375 1690 aaKnown RBP8.76□□□□□ -1.01
PTCD3-207ENST00000467273 HRCP23327 699 aa8.76□□□□□ -1.01
PTCD3-207ENST00000467273 RNFT1Q5M7Z0 435 aa8.76□□□□□ -1.01
PTCD3-207ENST00000467273 EID1Q9Y6B2 187 aa8.76□□□□□ -1.01
PTCD3-207ENST00000467273 DNMT3AQ9Y6K1 912 aaPredicted RBP8.76□□□□□ -1.01
PTCD3-207ENST00000467273 FGD6Q6ZV73 1430 aa8.76□□□□□ -1.01
PTCD3-207ENST00000467273 SPATA31A6Q5VVP1 1343 aa8.76□□□□□ -1.01
PTCD3-207ENST00000467273 NKTRP30414 1462 aaKnown RBP8.76□□□□□ -1.01
PTCD3-207ENST00000467273 NCOA2Q15596 1464 aa8.76□□□□□ -1.01
PTCD3-207ENST00000467273 TMEM94Q12767 1356 aa8.75□□□□□ -1.01
PTCD3-207ENST00000467273 PHLPP1O60346 1717 aa8.75□□□□□ -1.01
PTCD3-207ENST00000467273 MAGEB6P1A0A0J9YX57 407 aa8.75□□□□□ -1.01
PTCD3-207ENST00000467273 PER1O15534 1290 aaPredicted RBP8.75□□□□□ -1.01
PTCD3-207ENST00000467273 CSPP1Q1MSJ5 1256 aa8.75□□□□□ -1.01
PTCD3-207ENST00000467273 CCDC155Q8N6L0 562 aa8.75□□□□□ -1.01
PTCD3-207ENST00000467273 WHAMMQ8TF30 809 aa8.75□□□□□ -1.01
PTCD3-207ENST00000467273 EMILIN1Q9Y6C2 1016 aa8.75□□□□□ -1.01
PTCD3-207ENST00000467273 MAP3K1Q13233 1512 aa8.75□□□□□ -1.01
PTCD3-207ENST00000467273 EHBP1L1Q8N3D4 1523 aa8.75□□□□□ -1.01
PTCD3-207ENST00000467273 ARHGEF5Q12774 1597 aa8.74□□□□□ -1.01
PTCD3-207ENST00000467273 CEP162Q5TB80 1403 aa8.74□□□□□ -1.01
PTCD3-207ENST00000467273 CDC14CA4D256 554 aa8.74□□□□□ -1.01
PTCD3-207ENST00000467273 MARSP56192 900 aaKnown RBP8.74□□□□□ -1.01
PTCD3-207ENST00000467273 TXNDC2Q86VQ3 553 aa8.74□□□□□ -1.01
PTCD3-207ENST00000467273 CCDC116Q8IYX3 515 aa8.74□□□□□ -1.01
PTCD3-207ENST00000467273 CABLES1Q8TDN4 633 aa8.74□□□□□ -1.01
PTCD3-207ENST00000467273 AK7Q96M32 723 aa8.74□□□□□ -1.01
PTCD3-207ENST00000467273 ZNF644Q9H582 1327 aaPredicted RBP8.74□□□□□ -1.01
PTCD3-207ENST00000467273 PRDM15P57071 1507 aaPredicted RBP8.74□□□□□ -1.01
PTCD3-207ENST00000467273 NWD1Q149M9 1564 aa8.73□□□□□ -1.01
PTCD3-207ENST00000467273 ARHGAP31Q2M1Z3 1444 aa8.73□□□□□ -1.01
PTCD3-207ENST00000467273 KCNA6P17658 529 aa8.73□□□□□ -1.01
PTCD3-207ENST00000467273 LTKP29376 864 aa8.73□□□□□ -1.01
PTCD3-207ENST00000467273 GJA5P36382 358 aa8.73□□□□□ -1.01
PTCD3-207ENST00000467273 C1QTNF2Q9BXJ5 285 aa8.73□□□□□ -1.01
PTCD3-207ENST00000467273 MSH6P52701 1360 aa8.73□□□□□ -1.01
PTCD3-207ENST00000467273 COL16A1Q07092 1604 aaPredicted RBP8.72□□□□□ -1.01
PTCD3-207ENST00000467273 DIXDC1Q155Q3 683 aa8.72□□□□□ -1.01
PTCD3-207ENST00000467273 NANOS1Q8WY41 292 aaKnown RBP8.72□□□□□ -1.01
PTCD3-207ENST00000467273 CARD14Q9BXL6 1004 aa8.72□□□□□ -1.01
PTCD3-207ENST00000467273 TIMELESSQ9UNS1 1208 aa8.72□□□□□ -1.01
PTCD3-207ENST00000467273 MAP4K5Q9Y4K4 846 aa8.72□□□□□ -1.01
PTCD3-207ENST00000467273 TMEM2Q9UHN6 1383 aa8.72□□□□□ -1.01
PTCD3-207ENST00000467273 SHPRHQ149N8 1683 aa8.72□□□□□ -1.01
PTCD3-207ENST00000467273 NCOA3Q9Y6Q9 1424 aa8.71□□□□□ -1.01
PTCD3-207ENST00000467273 MAST1Q9Y2H9 1570 aa8.71□□□□□ -1.02
PTCD3-207ENST00000467273 IGHA1P01876 353 aa8.71□□□□□ -1.02
PTCD3-207ENST00000467273 TSPY4P0CV99 314 aa8.71□□□□□ -1.02
PTCD3-207ENST00000467273 TSPY10P0CW01 314 aa8.71□□□□□ -1.02
PTCD3-207ENST00000467273 CBLBQ13191 982 aa8.71□□□□□ -1.02
PTCD3-207ENST00000467273 AMHR2Q16671 573 aa8.71□□□□□ -1.02
PTCD3-207ENST00000467273 NBPF14Q5TI25 921 aa8.71□□□□□ -1.02
PTCD3-207ENST00000467273 PROSER2Q86WR7 435 aaPredicted RBP8.71□□□□□ -1.02
PTCD3-207ENST00000467273 VWA5B2Q8N398 1253 aa8.71□□□□□ -1.02
PTCD3-207ENST00000467273 ARMC2Q8NEN0 867 aa8.71□□□□□ -1.02
PTCD3-207ENST00000467273 SLAIN2Q9P270 581 aa8.71□□□□□ -1.02
PTCD3-207ENST00000467273 MROH1Q8NDA8 1641 aa8.71□□□□□ -1.02
PTCD3-207ENST00000467273 TET3O43151 1660 aa8.71□□□□□ -1.02
PTCD3-207ENST00000467273 RXRBP28702 533 aa8.7□□□□□ -1.02
PTCD3-207ENST00000467273 LRP6O75581 1613 aa8.69□□□□□ -1.02
PTCD3-207ENST00000467273 AHDC1Q5TGY3 1603 aaPredicted RBP8.69□□□□□ -1.02
PTCD3-207ENST00000467273 CEP152O94986 1710 aa8.69□□□□□ -1.02
PTCD3-207ENST00000467273 ITGA6P23229 1130 aa8.69□□□□□ -1.02
PTCD3-207ENST00000467273 KANK3Q6NY19 840 aa8.69□□□□□ -1.02
PTCD3-207ENST00000467273 RIC3Q7Z5B4 369 aa8.69□□□□□ -1.02
PTCD3-207ENST00000467273 SH3RF1Q7Z6J0 888 aa8.69□□□□□ -1.02
PTCD3-207ENST00000467273 PGPEP1Q9NXJ5 209 aa8.69□□□□□ -1.02
PTCD3-207ENST00000467273 EFCAB6Q5THR3 1501 aa8.69□□□□□ -1.02
PTCD3-207ENST00000467273 PIK3C2BO00750 1634 aa8.69□□□□□ -1.02
PTCD3-207ENST00000467273 NUTM2BA6NNL0 878 aaPredicted RBP8.68□□□□□ -1.02
PTCD3-207ENST00000467273 NUTM2EB1AL46 878 aaPredicted RBP8.68□□□□□ -1.02
PTCD3-207ENST00000467273 TRIM66O15016 1216 aa8.68□□□□□ -1.02
PTCD3-207ENST00000467273 SPINT1O43278 529 aa8.68□□□□□ -1.02
PTCD3-207ENST00000467273 ARHGEF15O94989 841 aa8.68□□□□□ -1.02
PTCD3-207ENST00000467273 SLURP2P0DP57 97 aa8.68□□□□□ -1.02
PTCD3-207ENST00000467273 PPP1R26Q5T8A7 1209 aaPredicted RBP8.68□□□□□ -1.02
PTCD3-207ENST00000467273 MEX3CQ5U5Q3 659 aaKnown RBP8.68□□□□□ -1.02
PTCD3-207ENST00000467273 NUTM2DQ5VT03 806 aaPredicted RBP8.68□□□□□ -1.02
PTCD3-207ENST00000467273 PRPF38BQ5VTL8 546 aaKnown RBP8.68□□□□□ -1.02
PTCD3-207ENST00000467273 SV2AQ7L0J3 742 aa8.68□□□□□ -1.02
PTCD3-207ENST00000467273 NUTM2AQ8IVF1 878 aaPredicted RBP8.68□□□□□ -1.02
PTCD3-207ENST00000467273 TRMT44Q8IYL2 757 aaKnown RBP8.68□□□□□ -1.02
PTCD3-207ENST00000467273 TRIM52Q96A61 297 aa8.68□□□□□ -1.02
PTCD3-207ENST00000467273 GPBP1L1Q9HC44 474 aaPredicted RBP8.68□□□□□ -1.02
PTCD3-207ENST00000467273 SLC35F4A4IF30 521 aa8.67□□□□□ -1.02
PTCD3-207ENST00000467273 FOXK2Q01167 660 aa8.67□□□□□ -1.02
PTCD3-207ENST00000467273 SH3BP5LQ7L8J4 393 aa8.67□□□□□ -1.02
PTCD3-207ENST00000467273 SCARF2Q96GP6 870 aaPredicted RBP8.67□□□□□ -1.02
PTCD3-207ENST00000467273 DUOX2Q9NRD8 1548 aa8.66□□□□□ -1.02
PTCD3-207ENST00000467273 CFAP65Q6ZU64 1925 aaKnown RBP8.66□□□□□ -1.02
PTCD3-207ENST00000467273 CHD2O14647 1828 aaKnown RBP8.66□□□□□ -1.02
PTCD3-207ENST00000467273 MAP3K10Q02779 954 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms