RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 PRAMEF22A3QJZ6 481 aa10.95□□□□□ -0.66
SYNE1-217ENST00000466159 SLIT3O75094 1523 aa10.95□□□□□ -0.66
SYNE1-217ENST00000466159 ADCY9O60503 1353 aa10.95□□□□□ -0.66
SYNE1-217ENST00000466159 PROSER3Q2NL68 480 aa10.95□□□□□ -0.66
SYNE1-217ENST00000466159 ZGPATQ8N5A5 531 aaKnown RBP10.95□□□□□ -0.66
SYNE1-217ENST00000466159 PKP1Q13835 747 aa10.94□□□□□ -0.66
SYNE1-217ENST00000466159 RHPN1Q8TCX5 695 aa10.94□□□□□ -0.66
SYNE1-217ENST00000466159 NCAPD2Q15021 1401 aa10.94□□□□□ -0.66
SYNE1-217ENST00000466159 RAB11FIP3O75154 756 aa10.94□□□□□ -0.66
SYNE1-217ENST00000466159 GIGYF1O75420 1035 aaPredicted RBP10.94□□□□□ -0.66
SYNE1-217ENST00000466159 ZC3H6P61129 1189 aaKnown RBP10.94□□□□□ -0.66
SYNE1-217ENST00000466159 PANK2Q9BZ23 570 aa10.94□□□□□ -0.66
SYNE1-217ENST00000466159 ANO2Q9NQ90 1003 aa10.94□□□□□ -0.66
SYNE1-217ENST00000466159 DBF4Q9UBU7 674 aaPredicted RBP10.94□□□□□ -0.66
SYNE1-217ENST00000466159 PALD1Q9ULE6 856 aa10.94□□□□□ -0.66
SYNE1-217ENST00000466159 RGPD5Q99666 1765 aa10.94□□□□□ -0.66
SYNE1-217ENST00000466159 BAG4O95429 457 aaKnown RBP10.93□□□□□ -0.66
SYNE1-217ENST00000466159 MAP4K4O95819 1239 aaPredicted RBP10.93□□□□□ -0.66
SYNE1-217ENST00000466159 NEK4P51957 841 aa10.93□□□□□ -0.66
SYNE1-217ENST00000466159 CHMP4AQ9BY43 222 aa10.93□□□□□ -0.66
SYNE1-217ENST00000466159 IL25Q9H293 177 aa10.93□□□□□ -0.66
SYNE1-217ENST00000466159 TRPM3Q9HCF6 1732 aaPredicted RBP10.93□□□□□ -0.66
SYNE1-217ENST00000466159 CLEC17AQ6ZS10 378 aa10.93□□□□□ -0.66
SYNE1-217ENST00000466159 MAP3K2Q9Y2U5 619 aa10.93□□□□□ -0.66
SYNE1-217ENST00000466159 C1orf167Q5SNV9 1468 aa10.92□□□□□ -0.66
SYNE1-217ENST00000466159 CYP2E1P05181 493 aaPredicted RBP10.92□□□□□ -0.66
SYNE1-217ENST00000466159 NUCB2P80303 420 aa10.92□□□□□ -0.66
SYNE1-217ENST00000466159 SKOR2Q2VWA4 1001 aaPredicted RBP10.92□□□□□ -0.66
SYNE1-217ENST00000466159 PI4K2BQ8TCG2 481 aa10.92□□□□□ -0.66
SYNE1-217ENST00000466159 DDX17Q92841 729 aaKnown RBP10.92□□□□□ -0.66
SYNE1-217ENST00000466159 KIF1BPQ96EK5 621 aa10.92□□□□□ -0.66
SYNE1-217ENST00000466159 C19orf44Q9H6X5 657 aa10.92□□□□□ -0.66
SYNE1-217ENST00000466159 AOX1Q06278 1338 aa10.92□□□□□ -0.66
SYNE1-217ENST00000466159 CWF19L2Q2TBE0 894 aaKnown RBP10.91□□□□□ -0.66
SYNE1-217ENST00000466159 ERBB3P21860 1342 aa10.91□□□□□ -0.66
SYNE1-217ENST00000466159 HEG1Q9ULI3 1381 aa10.91□□□□□ -0.66
SYNE1-217ENST00000466159 CWC22Q9HCG8 908 aaKnown RBP10.91□□□□□ -0.66
SYNE1-217ENST00000466159 GOLGA6L22H0YM25 854 aa10.9□□□□□ -0.66
SYNE1-217ENST00000466159 MCCP23508 829 aa10.9□□□□□ -0.66
SYNE1-217ENST00000466159 MCTP1Q6DN14 999 aa10.9□□□□□ -0.66
SYNE1-217ENST00000466159 KSR2Q6VAB6 950 aa10.9□□□□□ -0.66
SYNE1-217ENST00000466159 GAS2L3Q86XJ1 694 aa10.9□□□□□ -0.66
SYNE1-217ENST00000466159 TMX3Q96JJ7 454 aa10.9□□□□□ -0.66
SYNE1-217ENST00000466159 C9orf78Q9NZ63 289 aaPredicted RBP10.9□□□□□ -0.66
SYNE1-217ENST00000466159 OVOS2A0A0G2JMS6 1433 aa10.9□□□□□ -0.66
SYNE1-217ENST00000466159 PTMSP20962 102 aa10.9□□□□□ -0.66
SYNE1-217ENST00000466159 MRE11P49959 708 aa10.9□□□□□ -0.66
SYNE1-217ENST00000466159 SLC39A6Q13433 755 aa10.9□□□□□ -0.66
SYNE1-217ENST00000466159 GRPEL1Q9HAV7 217 aa10.9□□□□□ -0.66
SYNE1-217ENST00000466159 ZDHHC9Q9Y397 364 aa10.9□□□□□ -0.66
SYNE1-217ENST00000466159 CAMTA1Q9Y6Y1 1673 aa10.9□□□□□ -0.66
SYNE1-217ENST00000466159 AIMP1Q12904 312 aaKnown RBP10.89□□□□□ -0.67
SYNE1-217ENST00000466159 OS9Q13438 667 aaPredicted RBP10.89□□□□□ -0.67
SYNE1-217ENST00000466159 NOL8Q76FK4 1167 aaKnown RBP10.89□□□□□ -0.67
SYNE1-217ENST00000466159 NLRP2Q9NX02 1062 aa10.89□□□□□ -0.67
SYNE1-217ENST00000466159 SIPA1L3O60292 1781 aaPredicted RBP10.89□□□□□ -0.67
SYNE1-217ENST00000466159 ANAPC15P60006 121 aa10.89□□□□□ -0.67
SYNE1-217ENST00000466159 UPF3BQ9BZI7 483 aaKnown RBP10.89□□□□□ -0.67
SYNE1-217ENST00000466159 PA2G4Q9UQ80 394 aaKnown RBP10.89□□□□□ -0.67
SYNE1-217ENST00000466159 DDX49Q9Y6V7 483 aaKnown RBP10.89□□□□□ -0.67
SYNE1-217ENST00000466159 ALDH1L1O75891 902 aa10.88□□□□□ -0.67
SYNE1-217ENST00000466159 MTX1Q13505 466 aa10.88□□□□□ -0.67
SYNE1-217ENST00000466159 HSP90AB4PQ58FF6 505 aa10.88□□□□□ -0.67
SYNE1-217ENST00000466159 RAPGEF4Q8WZA2 1011 aa10.88□□□□□ -0.67
SYNE1-217ENST00000466159 HYPKQ9NX55 129 aa10.88□□□□□ -0.67
SYNE1-217ENST00000466159 PDIA6Q15084 440 aa10.88□□□□□ -0.67
SYNE1-217ENST00000466159 FAM43AQ8N2R8 423 aa10.88□□□□□ -0.67
SYNE1-217ENST00000466159 CABLES1Q8TDN4 633 aa10.88□□□□□ -0.67
SYNE1-217ENST00000466159 CHAMP1Q96JM3 812 aa10.88□□□□□ -0.67
SYNE1-217ENST00000466159 KIF1AQ12756 1690 aa10.88□□□□□ -0.67
SYNE1-217ENST00000466159 KLHL40Q2TBA0 621 aa10.88□□□□□ -0.67
SYNE1-217ENST00000466159 ZNF790Q6PG37 636 aa10.88□□□□□ -0.67
SYNE1-217ENST00000466159 NFATC2IPQ8NCF5 419 aa10.88□□□□□ -0.67
SYNE1-217ENST00000466159 DDX21Q9NR30 783 aaKnown RBP eCLIP10.88□□□□□ -0.67
SYNE1-217ENST00000466159 ALS2Q96Q42 1657 aa10.87□□□□□ -0.67
SYNE1-217ENST00000466159 SGSM2O43147 1006 aa10.87□□□□□ -0.67
SYNE1-217ENST00000466159 ATF3P18847 181 aa10.87□□□□□ -0.67
SYNE1-217ENST00000466159 HSPA4P34932 840 aa10.87□□□□□ -0.67
SYNE1-217ENST00000466159 MCM2P49736 904 aa10.87□□□□□ -0.67
SYNE1-217ENST00000466159 FOXD4L5Q5VV16 416 aaPredicted RBP10.87□□□□□ -0.67
SYNE1-217ENST00000466159 CNTROBQ8N137 903 aa10.87□□□□□ -0.67
SYNE1-217ENST00000466159 FOXD4L4Q8WXT5 416 aaPredicted RBP10.87□□□□□ -0.67
SYNE1-217ENST00000466159 KAZALD1Q96I82 304 aa10.87□□□□□ -0.67
SYNE1-217ENST00000466159 LMBRD1Q9NUN5 540 aa10.87□□□□□ -0.67
SYNE1-217ENST00000466159 NPHP3Q7Z494 1330 aa10.87□□□□□ -0.67
SYNE1-217ENST00000466159 CWC27Q6UX04 472 aaKnown RBP10.87□□□□□ -0.67
SYNE1-217ENST00000466159 CLASRPQ8N2M8 674 aaKnown RBP10.87□□□□□ -0.67
SYNE1-217ENST00000466159 LINS1Q8NG48 757 aa10.87□□□□□ -0.67
SYNE1-217ENST00000466159 SUCLG2Q96I99 432 aa10.87□□□□□ -0.67
SYNE1-217ENST00000466159 SLC52A2Q9HAB3 445 aa10.87□□□□□ -0.67
SYNE1-217ENST00000466159 ISY1Q9ULR0 285 aaKnown RBP10.87□□□□□ -0.67
SYNE1-217ENST00000466159 KDM6AO15550 1401 aaPredicted RBP10.86□□□□□ -0.67
SYNE1-217ENST00000466159 ADAMTS7Q9UKP4 1686 aa10.86□□□□□ -0.67
SYNE1-217ENST00000466159 GRM8O00222 908 aa10.86□□□□□ -0.67
SYNE1-217ENST00000466159 MYL6BP14649 208 aa10.86□□□□□ -0.67
SYNE1-217ENST00000466159 PHKG2P15735 406 aa10.86□□□□□ -0.67
SYNE1-217ENST00000466159 IL17RAQ96F46 866 aa10.86□□□□□ -0.67
SYNE1-217ENST00000466159 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.86□□□□□ -0.67
SYNE1-217ENST00000466159 TMEM94Q12767 1356 aa10.86□□□□□ -0.67
SYNE1-217ENST00000466159 USP42Q9H9J4 1324 aaKnown RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms