RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 AMIGO3Q86WK7 504 aa17.22■□□□□ 0.35
COL28A1-206ENST00000465339 ARXQ96QS3 562 aa17.22■□□□□ 0.35
COL28A1-206ENST00000465339 ANP32CO43423 234 aa17.21■□□□□ 0.35
COL28A1-206ENST00000465339 CRKLP46109 303 aaKnown RBP17.21■□□□□ 0.35
COL28A1-206ENST00000465339 DCTN1Q14203 1278 aa17.21■□□□□ 0.35
COL28A1-206ENST00000465339 TAF7Q15545 349 aaPredicted RBP17.21■□□□□ 0.35
COL28A1-206ENST00000465339 DNAJC10Q8IXB1 793 aa17.21■□□□□ 0.35
COL28A1-206ENST00000465339 TEX13AQ9BXU3 409 aaPredicted RBP17.21■□□□□ 0.35
COL28A1-206ENST00000465339 ADAMTS8Q9UP79 889 aa17.21■□□□□ 0.35
COL28A1-206ENST00000465339 CYP19A1P11511 503 aaPredicted RBP17.2■□□□□ 0.34
COL28A1-206ENST00000465339 RUNDC1Q96C34 613 aa17.2■□□□□ 0.34
COL28A1-206ENST00000465339 ZNF496Q96IT1 587 aaPredicted RBP17.2■□□□□ 0.34
COL28A1-206ENST00000465339 FMNL2Q96PY5 1086 aa17.2■□□□□ 0.34
COL28A1-206ENST00000465339 STARD3NLO95772 234 aa17.19■□□□□ 0.34
COL28A1-206ENST00000465339 INTS5Q6P9B9 1019 aaKnown RBP17.19■□□□□ 0.34
COL28A1-206ENST00000465339 SMIM5Q71RC9 77 aa17.19■□□□□ 0.34
COL28A1-206ENST00000465339 CCDC87Q9NVE4 849 aa17.19■□□□□ 0.34
COL28A1-206ENST00000465339 HEG1Q9ULI3 1381 aa17.18■□□□□ 0.34
COL28A1-206ENST00000465339 RFC4P35249 363 aa17.18■□□□□ 0.34
COL28A1-206ENST00000465339 TMPOP42166 694 aaKnown RBP17.18■□□□□ 0.34
COL28A1-206ENST00000465339 RIPK4P57078 832 aa17.18■□□□□ 0.34
COL28A1-206ENST00000465339 PNISRQ8TF01 805 aaKnown RBP17.18■□□□□ 0.34
COL28A1-206ENST00000465339 ARHGEF1Q92888 912 aaKnown RBP17.18■□□□□ 0.34
COL28A1-206ENST00000465339 LMOD3Q0VAK6 560 aa17.17■□□□□ 0.34
COL28A1-206ENST00000465339 FKBP8Q14318 412 aa17.17■□□□□ 0.34
COL28A1-206ENST00000465339 KCNQ3O43525 872 aa17.16■□□□□ 0.34
COL28A1-206ENST00000465339 MSL1Q68DK7 614 aa17.16■□□□□ 0.34
COL28A1-206ENST00000465339 CCDC146Q8IYE0 955 aa17.16■□□□□ 0.34
COL28A1-206ENST00000465339 NLGN1Q8N2Q7 840 aa17.16■□□□□ 0.34
COL28A1-206ENST00000465339 SYT17Q9BSW7 474 aa17.16■□□□□ 0.34
COL28A1-206ENST00000465339 FHDC1Q9C0D6 1143 aaPredicted RBP17.16■□□□□ 0.34
COL28A1-206ENST00000465339 C4AP0C0L4 1744 aa17.13■□□□□ 0.33
COL28A1-206ENST00000465339 SPDYE2BA6NHP3 402 aa17.13■□□□□ 0.33
COL28A1-206ENST00000465339 SNRPA1P09661 255 aaKnown RBP17.13■□□□□ 0.33
COL28A1-206ENST00000465339 SPDYE6P0CI01 402 aa17.13■□□□□ 0.33
COL28A1-206ENST00000465339 SPDYE2Q495Y8 402 aa17.13■□□□□ 0.33
COL28A1-206ENST00000465339 SOS1Q07889 1333 aaPredicted RBP17.13■□□□□ 0.33
COL28A1-206ENST00000465339 NEUROD2Q15784 382 aa17.12■□□□□ 0.33
COL28A1-206ENST00000465339 THUMPD2Q9BTF0 503 aaKnown RBP17.12■□□□□ 0.33
COL28A1-206ENST00000465339 BABAM1Q9NWV8 329 aa17.12■□□□□ 0.33
COL28A1-206ENST00000465339 MIS18AQ9NYP9 233 aa17.12■□□□□ 0.33
COL28A1-206ENST00000465339 ZBTB1Q9Y2K1 713 aa17.12■□□□□ 0.33
COL28A1-206ENST00000465339 KDM3BQ7LBC6 1761 aa17.12■□□□□ 0.33
COL28A1-206ENST00000465339 ZPR1O75312 459 aa17.11■□□□□ 0.33
COL28A1-206ENST00000465339 GYS1P13807 737 aa17.11■□□□□ 0.33
COL28A1-206ENST00000465339 CCDC184Q52MB2 194 aa17.11■□□□□ 0.33
COL28A1-206ENST00000465339 RRP7AQ9Y3A4 280 aaKnown RBP17.11■□□□□ 0.33
COL28A1-206ENST00000465339 USP42Q9H9J4 1324 aaKnown RBP17.11■□□□□ 0.33
COL28A1-206ENST00000465339 A0A087WZG4 1122 aa17.1■□□□□ 0.33
COL28A1-206ENST00000465339 CANXP27824 592 aaKnown RBP17.1■□□□□ 0.33
COL28A1-206ENST00000465339 KLHL34Q8N239 644 aa17.1■□□□□ 0.33
COL28A1-206ENST00000465339 MRS2Q9HD23 443 aa17.1■□□□□ 0.33
COL28A1-206ENST00000465339 CD2APQ9Y5K6 639 aa17.1■□□□□ 0.33
COL28A1-206ENST00000465339 USP16Q9Y5T5 823 aa17.1■□□□□ 0.33
COL28A1-206ENST00000465339 MMP10P09238 476 aa17.09■□□□□ 0.33
COL28A1-206ENST00000465339 IL6STP40189 918 aaPredicted RBP17.09■□□□□ 0.33
COL28A1-206ENST00000465339 EIF5P55010 431 aaKnown RBP17.09■□□□□ 0.33
COL28A1-206ENST00000465339 NARFQ9UHQ1 456 aa17.09■□□□□ 0.33
COL28A1-206ENST00000465339 TRIM35Q9UPQ4 493 aa17.09■□□□□ 0.33
COL28A1-206ENST00000465339 COL15A1P39059 1388 aa17.09■□□□□ 0.33
COL28A1-206ENST00000465339 A1BGP04217 495 aa17.08■□□□□ 0.32
COL28A1-206ENST00000465339 EIF4A1P60842 406 aaKnown RBP17.08■□□□□ 0.32
COL28A1-206ENST00000465339 NPM2Q86SE8 214 aaKnown RBP17.08■□□□□ 0.32
COL28A1-206ENST00000465339 SRP68Q9UHB9 627 aaKnown RBP17.08■□□□□ 0.32
COL28A1-206ENST00000465339 APAF1O14727 1248 aa17.07■□□□□ 0.32
COL28A1-206ENST00000465339 TSPYL4Q9UJ04 414 aa17.07■□□□□ 0.32
COL28A1-206ENST00000465339 PRAMEF22A3QJZ6 481 aa17.06■□□□□ 0.32
COL28A1-206ENST00000465339 GIGYF1O75420 1035 aaPredicted RBP17.06■□□□□ 0.32
COL28A1-206ENST00000465339 USPL1Q5W0Q7 1092 aa17.06■□□□□ 0.32
COL28A1-206ENST00000465339 PARP3Q9Y6F1 533 aa17.06■□□□□ 0.32
COL28A1-206ENST00000465339 LAMB4A4D0S4 1761 aa17.05■□□□□ 0.32
COL28A1-206ENST00000465339 CHL1O00533 1208 aa17.04■□□□□ 0.32
COL28A1-206ENST00000465339 TM4SF1P30408 202 aa17.04■□□□□ 0.32
COL28A1-206ENST00000465339 CALD1Q05682 793 aaKnown RBP17.03■□□□□ 0.32
COL28A1-206ENST00000465339 NLGN2Q8NFZ4 835 aa17.03■□□□□ 0.32
COL28A1-206ENST00000465339 ZNF330Q9Y3S2 320 aaPredicted RBP17.03■□□□□ 0.32
COL28A1-206ENST00000465339 CFAP44Q96MT7 982 aa17.02■□□□□ 0.32
COL28A1-206ENST00000465339 BCL2L12Q9HB09 334 aa17.02■□□□□ 0.32
COL28A1-206ENST00000465339 TBC1D2BQ9UPU7 963 aa17.02■□□□□ 0.32
COL28A1-206ENST00000465339 KIF13BQ9NQT8 1826 aa17.02■□□□□ 0.31
COL28A1-206ENST00000465339 NBPF26B4DH59 902 aa17.01■□□□□ 0.31
COL28A1-206ENST00000465339 NBPF10Q6P3W6 841 aaKnown RBP17.01■□□□□ 0.31
COL28A1-206ENST00000465339 DZIP3Q86Y13 1208 aaKnown RBP17.01■□□□□ 0.31
COL28A1-206ENST00000465339 NBPF15Q8N660 670 aa17.01■□□□□ 0.31
COL28A1-206ENST00000465339 LAS1LQ9Y4W2 734 aaKnown RBP17.01■□□□□ 0.31
COL28A1-206ENST00000465339 TGFB2P61812 414 aa17■□□□□ 0.31
COL28A1-206ENST00000465339 POLRMTO00411 1230 aaKnown RBP16.99■□□□□ 0.31
COL28A1-206ENST00000465339 RGL2O15211 777 aa16.99■□□□□ 0.31
COL28A1-206ENST00000465339 PIP4K2AP48426 406 aaPredicted RBP16.99■□□□□ 0.31
COL28A1-206ENST00000465339 GNAI1P63096 354 aa16.99■□□□□ 0.31
COL28A1-206ENST00000465339 DDR1Q08345 913 aa16.99■□□□□ 0.31
COL28A1-206ENST00000465339 NFIXQ14938 502 aa16.99■□□□□ 0.31
COL28A1-206ENST00000465339 GPR162Q16538 588 aa16.99■□□□□ 0.31
COL28A1-206ENST00000465339 ERBB4Q15303 1308 aa16.98■□□□□ 0.31
COL28A1-206ENST00000465339 SCN7AQ01118 1682 aa16.98■□□□□ 0.31
COL28A1-206ENST00000465339 CAMTA2O94983 1202 aa16.98■□□□□ 0.31
COL28A1-206ENST00000465339 ZNF853P0CG23 659 aa16.98■□□□□ 0.31
COL28A1-206ENST00000465339 CCDC27Q2M243 656 aa16.98■□□□□ 0.31
COL28A1-206ENST00000465339 CLEC4GQ6UXB4 293 aa16.98■□□□□ 0.31
COL28A1-206ENST00000465339 IFT57Q9NWB7 429 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms