RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 C1QTNF8P60827 252 aa25.17■■□□□ 1.62
SF3A1-205ENST00000463818 TEX13AQ9BXU3 409 aaPredicted RBP25.17■■□□□ 1.62
SF3A1-205ENST00000463818 CEMIPQ8WUJ3 1361 aa25.17■■□□□ 1.62
SF3A1-205ENST00000463818 BTBD11A6QL63 1104 aa25.16■■□□□ 1.62
SF3A1-205ENST00000463818 GIGYF1O75420 1035 aaPredicted RBP25.16■■□□□ 1.62
SF3A1-205ENST00000463818 KCNQ3O43525 872 aa25.15■■□□□ 1.62
SF3A1-205ENST00000463818 KCNA3P22001 575 aa25.15■■□□□ 1.62
SF3A1-205ENST00000463818 RTF1Q92541 710 aaKnown RBP25.15■■□□□ 1.62
SF3A1-205ENST00000463818 FMNL2Q96PY5 1086 aa25.15■■□□□ 1.62
SF3A1-205ENST00000463818 COL15A1P39059 1388 aa25.15■■□□□ 1.62
SF3A1-205ENST00000463818 HEG1Q9ULI3 1381 aa25.15■■□□□ 1.62
SF3A1-205ENST00000463818 EIF5P55010 431 aaKnown RBP25.14■■□□□ 1.62
SF3A1-205ENST00000463818 BCL2L12Q9HB09 334 aa25.14■■□□□ 1.62
SF3A1-205ENST00000463818 C4AP0C0L4 1744 aa25.14■■□□□ 1.61
SF3A1-205ENST00000463818 ATP10DQ9P241 1426 aa25.13■■□□□ 1.61
SF3A1-205ENST00000463818 NFIXQ14938 502 aa25.13■■□□□ 1.61
SF3A1-205ENST00000463818 MCM10Q7L590 875 aa25.13■■□□□ 1.61
SF3A1-205ENST00000463818 A0A087WZG4 1122 aa25.12■■□□□ 1.61
SF3A1-205ENST00000463818 ARHGAP27Q6ZUM4 889 aa25.12■■□□□ 1.61
SF3A1-205ENST00000463818 PIM2Q9P1W9 311 aa25.12■■□□□ 1.61
SF3A1-205ENST00000463818 HTATSF1O43719 755 aaKnown RBP25.1■■□□□ 1.61
SF3A1-205ENST00000463818 A1BGP04217 495 aa25.1■■□□□ 1.61
SF3A1-205ENST00000463818 DCTN1Q14203 1278 aa25.1■■□□□ 1.61
SF3A1-205ENST00000463818 SERPINB2P05120 415 aa25.09■■□□□ 1.61
SF3A1-205ENST00000463818 CHRNA5P30532 468 aa25.09■■□□□ 1.61
SF3A1-205ENST00000463818 GPBP1L1Q9HC44 474 aaPredicted RBP25.09■■□□□ 1.61
SF3A1-205ENST00000463818 KIF13BQ9NQT8 1826 aa25.09■■□□□ 1.61
SF3A1-205ENST00000463818 ZNF526Q8TF50 670 aaPredicted RBP25.08■■□□□ 1.61
SF3A1-205ENST00000463818 ZNF330Q9Y3S2 320 aaPredicted RBP25.08■■□□□ 1.61
SF3A1-205ENST00000463818 USP16Q9Y5T5 823 aa25.08■■□□□ 1.61
SF3A1-205ENST00000463818 VIRMAQ69YN4 1812 aaKnown RBP25.07■■□□□ 1.6
SF3A1-205ENST00000463818 ADCY9O60503 1353 aa25.07■■□□□ 1.6
SF3A1-205ENST00000463818 IL6STP40189 918 aaPredicted RBP25.07■■□□□ 1.6
SF3A1-205ENST00000463818 DALRD3Q5D0E6 543 aaKnown RBP25.07■■□□□ 1.6
SF3A1-205ENST00000463818 BICDL1Q6ZP65 573 aa25.07■■□□□ 1.6
SF3A1-205ENST00000463818 TBC1D2BQ9UPU7 963 aa25.07■■□□□ 1.6
SF3A1-205ENST00000463818 N4BP2Q86UW6 1770 aaPredicted RBP25.06■■□□□ 1.6
SF3A1-205ENST00000463818 NEFMP07197 916 aa25.06■■□□□ 1.6
SF3A1-205ENST00000463818 TAF7Q15545 349 aaPredicted RBP25.05■■□□□ 1.6
SF3A1-205ENST00000463818 NPM2Q86SE8 214 aaKnown RBP25.05■■□□□ 1.6
SF3A1-205ENST00000463818 KIAA1551Q9HCM1 1747 aa25.05■■□□□ 1.6
SF3A1-205ENST00000463818 UBR2Q8IWV8 1755 aa25.05■■□□□ 1.6
SF3A1-205ENST00000463818 PRAMEF22A3QJZ6 481 aa25.04■■□□□ 1.6
SF3A1-205ENST00000463818 SENP3-EIF4A1A0A087X0R7 540 aa25.03■■□□□ 1.6
SF3A1-205ENST00000463818 SNRPA1P09661 255 aaKnown RBP25.03■■□□□ 1.6
SF3A1-205ENST00000463818 TBC1D9BQ66K14 1250 aa25.03■■□□□ 1.6
SF3A1-205ENST00000463818 PLEKHF1Q96S99 279 aa25.03■■□□□ 1.6
SF3A1-205ENST00000463818 MIS18AQ9NYP9 233 aa25.02■■□□□ 1.6
SF3A1-205ENST00000463818 PIP4K2AP48426 406 aaPredicted RBP25.01■■□□□ 1.59
SF3A1-205ENST00000463818 DDX10Q13206 875 aaKnown RBP25■■□□□ 1.59
SF3A1-205ENST00000463818 RALBP1Q15311 655 aa25■■□□□ 1.59
SF3A1-205ENST00000463818 SIPA1L3O60292 1781 aaPredicted RBP25■■□□□ 1.59
SF3A1-205ENST00000463818 CAMTA2O94983 1202 aa24.99■■□□□ 1.59
SF3A1-205ENST00000463818 PNNQ9H307 717 aaKnown RBP24.99■■□□□ 1.59
SF3A1-205ENST00000463818 NFE2L2Q16236 605 aa24.98■■□□□ 1.59
SF3A1-205ENST00000463818 C9orf131Q5VYM1 1079 aa24.98■■□□□ 1.59
SF3A1-205ENST00000463818 DZIP3Q86Y13 1208 aaKnown RBP24.98■■□□□ 1.59
SF3A1-205ENST00000463818 C2CD5Q86YS7 1000 aa24.97■■□□□ 1.59
SF3A1-205ENST00000463818 SETDB2Q96T68 719 aa24.96■■□□□ 1.59
SF3A1-205ENST00000463818 H0YIN7 160 aa24.95■■□□□ 1.58
SF3A1-205ENST00000463818 CCDC24Q8N4L8 307 aa24.95■■□□□ 1.58
SF3A1-205ENST00000463818 TTLL6Q8N841 843 aa24.95■■□□□ 1.58
SF3A1-205ENST00000463818 PNISRQ8TF01 805 aaKnown RBP24.95■■□□□ 1.58
SF3A1-205ENST00000463818 NBPF26B4DH59 902 aa24.94■■□□□ 1.58
SF3A1-205ENST00000463818 PRR5LQ6MZQ0 368 aa24.94■■□□□ 1.58
SF3A1-205ENST00000463818 NBPF10Q6P3W6 841 aaKnown RBP24.94■■□□□ 1.58
SF3A1-205ENST00000463818 NBPF15Q8N660 670 aa24.94■■□□□ 1.58
SF3A1-205ENST00000463818 THUMPD2Q9BTF0 503 aaKnown RBP24.94■■□□□ 1.58
SF3A1-205ENST00000463818 CARMIL3Q8ND23 1372 aa24.93■■□□□ 1.58
SF3A1-205ENST00000463818 MAPK8IP3Q9UPT6 1336 aa24.93■■□□□ 1.58
SF3A1-205ENST00000463818 KIF3CO14782 793 aa24.93■■□□□ 1.58
SF3A1-205ENST00000463818 BRIP1Q9BX63 1249 aa24.93■■□□□ 1.58
SF3A1-205ENST00000463818 CLEC4GQ6UXB4 293 aa24.92■■□□□ 1.58
SF3A1-205ENST00000463818 PDE6BP35913 854 aa24.91■■□□□ 1.58
SF3A1-205ENST00000463818 RNF181Q9P0P0 153 aa24.91■■□□□ 1.58
SF3A1-205ENST00000463818 BRCA1P38398 1863 aaKnown RBP24.9■■□□□ 1.58
SF3A1-205ENST00000463818 ZNF622Q969S3 477 aaKnown RBP eCLIP24.9■■□□□ 1.58
SF3A1-205ENST00000463818 PDZRN3Q9UPQ7 1066 aa24.9■■□□□ 1.58
SF3A1-205ENST00000463818 NRXN2Q9P2S2 1712 aa24.89■■□□□ 1.58
SF3A1-205ENST00000463818 AFDNP55196 1824 aaKnown RBP24.89■■□□□ 1.58
SF3A1-205ENST00000463818 NPHP1O15259 732 aa24.89■■□□□ 1.58
SF3A1-205ENST00000463818 EIF4A1P60842 406 aaKnown RBP24.89■■□□□ 1.58
SF3A1-205ENST00000463818 CNBD1Q8NA66 436 aa24.89■■□□□ 1.58
SF3A1-205ENST00000463818 ZNF652Q9Y2D9 606 aa24.88■■□□□ 1.57
SF3A1-205ENST00000463818 RIPK4P57078 832 aa24.87■■□□□ 1.57
SF3A1-205ENST00000463818 ST5P78524 1137 aa24.86■■□□□ 1.57
SF3A1-205ENST00000463818 RASSF7Q02833 373 aa24.86■■□□□ 1.57
SF3A1-205ENST00000463818 NMRK2Q9NPI5 230 aa24.86■■□□□ 1.57
SF3A1-205ENST00000463818 MYBBP1AQ9BQG0 1328 aaKnown RBP24.86■■□□□ 1.57
SF3A1-205ENST00000463818 ARFGEF1Q9Y6D6 1849 aa24.85■■□□□ 1.57
SF3A1-205ENST00000463818 NBPF5PQ86XG9 351 aaPredicted RBP24.85■■□□□ 1.57
SF3A1-205ENST00000463818 NGEFQ8N5V2 710 aa24.85■■□□□ 1.57
SF3A1-205ENST00000463818 NIP7Q9Y221 180 aaKnown RBP eCLIP24.84■■□□□ 1.57
SF3A1-205ENST00000463818 RRP7AQ9Y3A4 280 aaKnown RBP24.84■■□□□ 1.57
SF3A1-205ENST00000463818 RGL2O15211 777 aa24.83■■□□□ 1.57
SF3A1-205ENST00000463818 LMNB1P20700 586 aa24.83■■□□□ 1.57
SF3A1-205ENST00000463818 TMPOP42166 694 aaKnown RBP24.83■■□□□ 1.57
SF3A1-205ENST00000463818 HLFQ16534 295 aa24.83■■□□□ 1.57
SF3A1-205ENST00000463818 ZNF219Q9P2Y4 722 aaPredicted RBP24.83■■□□□ 1.57
SF3A1-205ENST00000463818 HSPA6P17066 643 aa24.82■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms