RNA–Protein interactions for RNA: ENST00000463172.5

HDAC1-203, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 895 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-203ENST00000463172 SOS1Q07889 1333 aaPredicted RBP17.31■□□□□ 0.36
HDAC1-203ENST00000463172 PNISRQ8TF01 805 aaKnown RBP17.31■□□□□ 0.36
HDAC1-203ENST00000463172 ZNF496Q96IT1 587 aaPredicted RBP17.31■□□□□ 0.36
HDAC1-203ENST00000463172 COL15A1P39059 1388 aa17.3■□□□□ 0.36
HDAC1-203ENST00000463172 WDR43Q15061 677 aaKnown RBP eCLIP17.3■□□□□ 0.36
HDAC1-203ENST00000463172 NFE2L2Q16236 605 aa17.3■□□□□ 0.36
HDAC1-203ENST00000463172 CANXP27824 592 aaKnown RBP17.29■□□□□ 0.36
HDAC1-203ENST00000463172 TAF7Q15545 349 aaPredicted RBP17.29■□□□□ 0.36
HDAC1-203ENST00000463172 NARFQ9UHQ1 456 aa17.29■□□□□ 0.36
HDAC1-203ENST00000463172 ZBTB1Q9Y2K1 713 aa17.29■□□□□ 0.36
HDAC1-203ENST00000463172 TGFB2P61812 414 aa17.28■□□□□ 0.36
HDAC1-203ENST00000463172 LMOD3Q0VAK6 560 aa17.28■□□□□ 0.36
HDAC1-203ENST00000463172 USPL1Q5W0Q7 1092 aa17.28■□□□□ 0.36
HDAC1-203ENST00000463172 PLEKHF1Q96S99 279 aa17.28■□□□□ 0.36
HDAC1-203ENST00000463172 SRP68Q9UHB9 627 aaKnown RBP17.28■□□□□ 0.36
HDAC1-203ENST00000463172 KIF13BQ9NQT8 1826 aa17.28■□□□□ 0.36
HDAC1-203ENST00000463172 SNRPA1P09661 255 aaKnown RBP17.27■□□□□ 0.36
HDAC1-203ENST00000463172 DCTN1Q14203 1278 aa17.27■□□□□ 0.36
HDAC1-203ENST00000463172 IL6STP40189 918 aaPredicted RBP17.26■□□□□ 0.35
HDAC1-203ENST00000463172 FKBP8Q14318 412 aa17.26■□□□□ 0.35
HDAC1-203ENST00000463172 ZNF330Q9Y3S2 320 aaPredicted RBP17.26■□□□□ 0.35
HDAC1-203ENST00000463172 UTRNP46939 3433 aa17.25■□□□□ 0.35
HDAC1-203ENST00000463172 C10orf71Q711Q0 1435 aa17.25■□□□□ 0.35
HDAC1-203ENST00000463172 EIF5P55010 431 aaKnown RBP17.25■□□□□ 0.35
HDAC1-203ENST00000463172 PRKRIP1Q9H875 184 aaPredicted RBP17.25■□□□□ 0.35
HDAC1-203ENST00000463172 GOLGB1Q14789 3259 aaKnown RBP17.23■□□□□ 0.35
HDAC1-203ENST00000463172 KCNQ3O43525 872 aa17.23■□□□□ 0.35
HDAC1-203ENST00000463172 YBX3P16989 372 aaKnown RBP eCLIP17.23■□□□□ 0.35
HDAC1-203ENST00000463172 RIPK4P57078 832 aa17.23■□□□□ 0.35
HDAC1-203ENST00000463172 TM4SF1P30408 202 aa17.22■□□□□ 0.35
HDAC1-203ENST00000463172 N4BP2Q86UW6 1770 aaPredicted RBP17.21■□□□□ 0.35
HDAC1-203ENST00000463172 POLRMTO00411 1230 aaKnown RBP17.21■□□□□ 0.35
HDAC1-203ENST00000463172 A1BGP04217 495 aa17.21■□□□□ 0.35
HDAC1-203ENST00000463172 RUNDC1Q96C34 613 aa17.21■□□□□ 0.35
HDAC1-203ENST00000463172 KDM3BQ7LBC6 1761 aa17.2■□□□□ 0.34
HDAC1-203ENST00000463172 PXDNLA1KZ92 1463 aa17.2■□□□□ 0.34
HDAC1-203ENST00000463172 DDR1Q08345 913 aa17.2■□□□□ 0.34
HDAC1-203ENST00000463172 USP16Q9Y5T5 823 aa17.2■□□□□ 0.34
HDAC1-203ENST00000463172 LAMB4A4D0S4 1761 aa17.2■□□□□ 0.34
HDAC1-203ENST00000463172 ZNF316A6NFI3 1004 aaPredicted RBP17.19■□□□□ 0.34
HDAC1-203ENST00000463172 TMPOP42166 694 aaKnown RBP17.19■□□□□ 0.34
HDAC1-203ENST00000463172 NFIXQ14938 502 aa17.19■□□□□ 0.34
HDAC1-203ENST00000463172 DZIP3Q86Y13 1208 aaKnown RBP17.19■□□□□ 0.34
HDAC1-203ENST00000463172 BABAM1Q9NWV8 329 aa17.19■□□□□ 0.34
HDAC1-203ENST00000463172 TBC1D2BQ9UPU7 963 aa17.19■□□□□ 0.34
HDAC1-203ENST00000463172 ZNF652Q9Y2D9 606 aa17.19■□□□□ 0.34
HDAC1-203ENST00000463172 SCN7AQ01118 1682 aa17.19■□□□□ 0.34
HDAC1-203ENST00000463172 A0A0G2JLW4 131 aa17.18■□□□□ 0.34
HDAC1-203ENST00000463172 NPHP1O15259 732 aa17.18■□□□□ 0.34
HDAC1-203ENST00000463172 SERPINB2P05120 415 aa17.18■□□□□ 0.34
HDAC1-203ENST00000463172 MIS18AQ9NYP9 233 aa17.18■□□□□ 0.34
HDAC1-203ENST00000463172 PIM2Q9P1W9 311 aa17.18■□□□□ 0.34
HDAC1-203ENST00000463172 TSPYL4Q9UJ04 414 aa17.18■□□□□ 0.34
HDAC1-203ENST00000463172 AFDNP55196 1824 aaKnown RBP17.18■□□□□ 0.34
HDAC1-203ENST00000463172 DPEP1P16444 411 aa17.17■□□□□ 0.34
HDAC1-203ENST00000463172 BICDL1Q6ZP65 573 aa17.17■□□□□ 0.34
HDAC1-203ENST00000463172 THUMPD2Q9BTF0 503 aaKnown RBP17.17■□□□□ 0.34
HDAC1-203ENST00000463172 WWC3Q9ULE0 1092 aa17.17■□□□□ 0.34
HDAC1-203ENST00000463172 BCS1LQ9Y276 419 aa17.17■□□□□ 0.34
HDAC1-203ENST00000463172 CARMIL3Q8ND23 1372 aa17.16■□□□□ 0.34
HDAC1-203ENST00000463172 KIAA1551Q9HCM1 1747 aa17.16■□□□□ 0.34
HDAC1-203ENST00000463172 RGL2O15211 777 aa17.16■□□□□ 0.34
HDAC1-203ENST00000463172 NEUROD2Q15784 382 aa17.16■□□□□ 0.34
HDAC1-203ENST00000463172 CLEC4GQ6UXB4 293 aa17.16■□□□□ 0.34
HDAC1-203ENST00000463172 CCDC146Q8IYE0 955 aa17.16■□□□□ 0.34
HDAC1-203ENST00000463172 ZNF784Q8NCA9 323 aaPredicted RBP17.16■□□□□ 0.34
HDAC1-203ENST00000463172 SETDB2Q96T68 719 aa17.16■□□□□ 0.34
HDAC1-203ENST00000463172 BCL2L12Q9HB09 334 aa17.16■□□□□ 0.34
HDAC1-203ENST00000463172 ADAMTS8Q9UP79 889 aa17.16■□□□□ 0.34
HDAC1-203ENST00000463172 PDZRN3Q9UPQ7 1066 aa17.16■□□□□ 0.34
HDAC1-203ENST00000463172 NRXN2Q9P2S2 1712 aa17.16■□□□□ 0.34
HDAC1-203ENST00000463172 GIGYF1O75420 1035 aaPredicted RBP17.15■□□□□ 0.34
HDAC1-203ENST00000463172 EIF4A1P60842 406 aaKnown RBP17.15■□□□□ 0.34
HDAC1-203ENST00000463172 DALRD3Q5D0E6 543 aaKnown RBP17.15■□□□□ 0.34
HDAC1-203ENST00000463172 BRCA1P38398 1863 aaKnown RBP17.15■□□□□ 0.34
HDAC1-203ENST00000463172 BCORQ6W2J9 1755 aa17.15■□□□□ 0.34
HDAC1-203ENST00000463172 PRAMEF22A3QJZ6 481 aa17.14■□□□□ 0.33
HDAC1-203ENST00000463172 CAMTA2O94983 1202 aa17.14■□□□□ 0.33
HDAC1-203ENST00000463172 ARFGEF1Q9Y6D6 1849 aa17.14■□□□□ 0.33
HDAC1-203ENST00000463172 ANP32CO43423 234 aa17.13■□□□□ 0.33
HDAC1-203ENST00000463172 TBC1D9BQ66K14 1250 aa17.13■□□□□ 0.33
HDAC1-203ENST00000463172 RRP7AQ9Y3A4 280 aaKnown RBP17.13■□□□□ 0.33
HDAC1-203ENST00000463172 ERBB4Q15303 1308 aa17.13■□□□□ 0.33
HDAC1-203ENST00000463172 H0YIN7 160 aa17.12■□□□□ 0.33
HDAC1-203ENST00000463172 PDE6BP35913 854 aa17.12■□□□□ 0.33
HDAC1-203ENST00000463172 PIP4K2AP48426 406 aaPredicted RBP17.12■□□□□ 0.33
HDAC1-203ENST00000463172 ST5P78524 1137 aa17.12■□□□□ 0.33
HDAC1-203ENST00000463172 CALD1Q05682 793 aaKnown RBP17.12■□□□□ 0.33
HDAC1-203ENST00000463172 KIF6Q6ZMV9 814 aa17.11■□□□□ 0.33
HDAC1-203ENST00000463172 ARHGAP27Q6ZUM4 889 aa17.11■□□□□ 0.33
HDAC1-203ENST00000463172 CNBD1Q8NA66 436 aa17.11■□□□□ 0.33
HDAC1-203ENST00000463172 NBPF26B4DH59 902 aa17.1■□□□□ 0.33
HDAC1-203ENST00000463172 CHRNA5P30532 468 aa17.1■□□□□ 0.33
HDAC1-203ENST00000463172 NBPF10Q6P3W6 841 aaKnown RBP17.1■□□□□ 0.33
HDAC1-203ENST00000463172 NBPF15Q8N660 670 aa17.1■□□□□ 0.33
HDAC1-203ENST00000463172 BRIP1Q9BX63 1249 aa17.1■□□□□ 0.33
HDAC1-203ENST00000463172 DLEC1Q9Y238 1755 aa17.1■□□□□ 0.33
HDAC1-203ENST00000463172 KCNA3P22001 575 aa17.09■□□□□ 0.33
HDAC1-203ENST00000463172 NBPF5PQ86XG9 351 aaPredicted RBP17.09■□□□□ 0.33
HDAC1-203ENST00000463172 C2CD5Q86YS7 1000 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms