RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 HEG1Q9ULI3 1381 aa18.6■□□□□ 0.57
USP4-206ENST00000461553 ZPR1O75312 459 aa18.6■□□□□ 0.57
USP4-206ENST00000461553 FCHSD2O94868 740 aa18.6■□□□□ 0.57
USP4-206ENST00000461553 ZNF790Q6PG37 636 aa18.6■□□□□ 0.57
USP4-206ENST00000461553 NRXN2Q9P2S2 1712 aa18.6■□□□□ 0.57
USP4-206ENST00000461553 RTF1Q92541 710 aaKnown RBP18.59■□□□□ 0.57
USP4-206ENST00000461553 DLEC1Q9Y238 1755 aa18.59■□□□□ 0.57
USP4-206ENST00000461553 STARD3NLO95772 234 aa18.58■□□□□ 0.56
USP4-206ENST00000461553 NEFMP07197 916 aa18.58■□□□□ 0.56
USP4-206ENST00000461553 TGFB2P61812 414 aa18.58■□□□□ 0.56
USP4-206ENST00000461553 FKBP8Q14318 412 aa18.58■□□□□ 0.56
USP4-206ENST00000461553 KDM3BQ7LBC6 1761 aa18.58■□□□□ 0.56
USP4-206ENST00000461553 USPL1Q5W0Q7 1092 aa18.57■□□□□ 0.56
USP4-206ENST00000461553 ZNF496Q96IT1 587 aaPredicted RBP18.57■□□□□ 0.56
USP4-206ENST00000461553 FMNL2Q96PY5 1086 aa18.57■□□□□ 0.56
USP4-206ENST00000461553 BTBD11A6QL63 1104 aa18.56■□□□□ 0.56
USP4-206ENST00000461553 DDR1Q08345 913 aa18.56■□□□□ 0.56
USP4-206ENST00000461553 TEX13AQ9BXU3 409 aaPredicted RBP18.56■□□□□ 0.56
USP4-206ENST00000461553 NARFQ9UHQ1 456 aa18.56■□□□□ 0.56
USP4-206ENST00000461553 CANXP27824 592 aaKnown RBP18.55■□□□□ 0.56
USP4-206ENST00000461553 ATP10DQ9P241 1426 aa18.55■□□□□ 0.56
USP4-206ENST00000461553 MCM10Q7L590 875 aa18.54■□□□□ 0.56
USP4-206ENST00000461553 ADCY9O60503 1353 aa18.54■□□□□ 0.56
USP4-206ENST00000461553 A0A087WZG4 1122 aa18.53■□□□□ 0.56
USP4-206ENST00000461553 A0A0G2JLW4 131 aa18.53■□□□□ 0.56
USP4-206ENST00000461553 POLRMTO00411 1230 aaKnown RBP18.53■□□□□ 0.56
USP4-206ENST00000461553 BCS1LQ9Y276 419 aa18.53■□□□□ 0.56
USP4-206ENST00000461553 ZNF330Q9Y3S2 320 aaPredicted RBP18.53■□□□□ 0.56
USP4-206ENST00000461553 HTATSF1O43719 755 aaKnown RBP18.52■□□□□ 0.56
USP4-206ENST00000461553 DPEP1P16444 411 aa18.52■□□□□ 0.56
USP4-206ENST00000461553 MAPK8IP3Q9UPT6 1336 aa18.51■□□□□ 0.55
USP4-206ENST00000461553 GIGYF1O75420 1035 aaPredicted RBP18.51■□□□□ 0.55
USP4-206ENST00000461553 EIF5P55010 431 aaKnown RBP18.51■□□□□ 0.55
USP4-206ENST00000461553 RALBP1Q15311 655 aa18.51■□□□□ 0.55
USP4-206ENST00000461553 NPM2Q86SE8 214 aaKnown RBP18.51■□□□□ 0.55
USP4-206ENST00000461553 ANKRD31Q8N7Z5 1873 aa18.51■□□□□ 0.55
USP4-206ENST00000461553 TM4SF1P30408 202 aa18.5■□□□□ 0.55
USP4-206ENST00000461553 DCTN1Q14203 1278 aa18.5■□□□□ 0.55
USP4-206ENST00000461553 NFIXQ14938 502 aa18.5■□□□□ 0.55
USP4-206ENST00000461553 KCNQ3O43525 872 aa18.49■□□□□ 0.55
USP4-206ENST00000461553 IL6STP40189 918 aaPredicted RBP18.49■□□□□ 0.55
USP4-206ENST00000461553 PNNQ9H307 717 aaKnown RBP18.49■□□□□ 0.55
USP4-206ENST00000461553 CACNA1SQ13698 1873 aa18.49■□□□□ 0.55
USP4-206ENST00000461553 COL11A2P13942 1736 aaPredicted RBP18.49■□□□□ 0.55
USP4-206ENST00000461553 BCL2L12Q9HB09 334 aa18.48■□□□□ 0.55
USP4-206ENST00000461553 DDX10Q13206 875 aaKnown RBP18.47■□□□□ 0.55
USP4-206ENST00000461553 PIM2Q9P1W9 311 aa18.47■□□□□ 0.55
USP4-206ENST00000461553 SBF1O95248 1867 aa18.47■□□□□ 0.55
USP4-206ENST00000461553 CARMIL3Q8ND23 1372 aa18.46■□□□□ 0.55
USP4-206ENST00000461553 SNRPA1P09661 255 aaKnown RBP18.46■□□□□ 0.55
USP4-206ENST00000461553 NFE2L2Q16236 605 aa18.46■□□□□ 0.55
USP4-206ENST00000461553 PLEKHF1Q96S99 279 aa18.46■□□□□ 0.55
USP4-206ENST00000461553 MYBBP1AQ9BQG0 1328 aaKnown RBP18.46■□□□□ 0.55
USP4-206ENST00000461553 A1BGP04217 495 aa18.45■□□□□ 0.54
USP4-206ENST00000461553 SERPINB2P05120 415 aa18.45■□□□□ 0.54
USP4-206ENST00000461553 DALRD3Q5D0E6 543 aaKnown RBP18.45■□□□□ 0.54
USP4-206ENST00000461553 BICDL1Q6ZP65 573 aa18.45■□□□□ 0.54
USP4-206ENST00000461553 GPBP1L1Q9HC44 474 aaPredicted RBP18.45■□□□□ 0.54
USP4-206ENST00000461553 TBC1D2BQ9UPU7 963 aa18.45■□□□□ 0.54
USP4-206ENST00000461553 ARFGEF2Q9Y6D5 1785 aa18.45■□□□□ 0.54
USP4-206ENST00000461553 KCNA3P22001 575 aa18.44■□□□□ 0.54
USP4-206ENST00000461553 CHRNA5P30532 468 aa18.44■□□□□ 0.54
USP4-206ENST00000461553 C1QTNF8P60827 252 aa18.44■□□□□ 0.54
USP4-206ENST00000461553 TAF7Q15545 349 aaPredicted RBP18.44■□□□□ 0.54
USP4-206ENST00000461553 ARHGAP27Q6ZUM4 889 aa18.44■□□□□ 0.54
USP4-206ENST00000461553 PNISRQ8TF01 805 aaKnown RBP18.44■□□□□ 0.54
USP4-206ENST00000461553 CCDC88AQ3V6T2 1871 aa18.43■□□□□ 0.54
USP4-206ENST00000461553 PRAMEF22A3QJZ6 481 aa18.43■□□□□ 0.54
USP4-206ENST00000461553 TBC1D9BQ66K14 1250 aa18.43■□□□□ 0.54
USP4-206ENST00000461553 DZIP3Q86Y13 1208 aaKnown RBP18.43■□□□□ 0.54
USP4-206ENST00000461553 ZNF526Q8TF50 670 aaPredicted RBP18.43■□□□□ 0.54
USP4-206ENST00000461553 USP16Q9Y5T5 823 aa18.43■□□□□ 0.54
USP4-206ENST00000461553 TIAM2Q8IVF5 1701 aa18.42■□□□□ 0.54
USP4-206ENST00000461553 NUP98P52948 1817 aa18.42■□□□□ 0.54
USP4-206ENST00000461553 CAMTA2O94983 1202 aa18.41■□□□□ 0.54
USP4-206ENST00000461553 PIP4K2AP48426 406 aaPredicted RBP18.41■□□□□ 0.54
USP4-206ENST00000461553 NPHP1O15259 732 aa18.4■□□□□ 0.54
USP4-206ENST00000461553 ZNF652Q9Y2D9 606 aa18.4■□□□□ 0.54
USP4-206ENST00000461553 TNRC6CQ9HCJ0 1690 aaKnown RBP18.39■□□□□ 0.53
USP4-206ENST00000461553 SENP3-EIF4A1A0A087X0R7 540 aa18.39■□□□□ 0.53
USP4-206ENST00000461553 C2CD5Q86YS7 1000 aa18.39■□□□□ 0.53
USP4-206ENST00000461553 SETDB2Q96T68 719 aa18.39■□□□□ 0.53
USP4-206ENST00000461553 THUMPD2Q9BTF0 503 aaKnown RBP18.39■□□□□ 0.53
USP4-206ENST00000461553 MIS18AQ9NYP9 233 aa18.39■□□□□ 0.53
USP4-206ENST00000461553 LMOD3Q0VAK6 560 aa18.38■□□□□ 0.53
USP4-206ENST00000461553 CNBD1Q8NA66 436 aa18.38■□□□□ 0.53
USP4-206ENST00000461553 FER1L6Q2WGJ9 1857 aa18.37■□□□□ 0.53
USP4-206ENST00000461553 H0YIN7 160 aa18.37■□□□□ 0.53
USP4-206ENST00000461553 ST5P78524 1137 aa18.37■□□□□ 0.53
USP4-206ENST00000461553 WDR43Q15061 677 aaKnown RBP eCLIP18.37■□□□□ 0.53
USP4-206ENST00000461553 PRR5LQ6MZQ0 368 aa18.37■□□□□ 0.53
USP4-206ENST00000461553 PDZRN3Q9UPQ7 1066 aa18.37■□□□□ 0.53
USP4-206ENST00000461553 DICER1Q9UPY3 1922 aaKnown RBP18.37■□□□□ 0.53
USP4-206ENST00000461553 PDE6BP35913 854 aa18.36■□□□□ 0.53
USP4-206ENST00000461553 CLEC4GQ6UXB4 293 aa18.36■□□□□ 0.53
USP4-206ENST00000461553 NBPF26B4DH59 902 aa18.35■□□□□ 0.53
USP4-206ENST00000461553 RIPK4P57078 832 aa18.35■□□□□ 0.53
USP4-206ENST00000461553 C9orf131Q5VYM1 1079 aa18.35■□□□□ 0.53
USP4-206ENST00000461553 NBPF10Q6P3W6 841 aaKnown RBP18.35■□□□□ 0.53
USP4-206ENST00000461553 NBPF15Q8N660 670 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms