RNA–Protein interactions for RNA: ENST00000460627.5

CHRD-208, Transcript of chordin, humanhuman

TSL 2

Gene CHRD, Length 4,719 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRD-208ENST00000460627 MAP3K12Q12852 859 aa20.97■□□□□ 0.95
CHRD-208ENST00000460627 HDAC1Q13547 482 aaPredicted RBP20.97■□□□□ 0.95
CHRD-208ENST00000460627 LDHAL6AQ6ZMR3 332 aa20.97■□□□□ 0.95
CHRD-208ENST00000460627 CFAP65Q6ZU64 1925 aaKnown RBP20.95■□□□□ 0.94
CHRD-208ENST00000460627 VAMP4O75379 141 aa20.95■□□□□ 0.94
CHRD-208ENST00000460627 RBM5P52756 815 aaKnown RBP eCLIP20.95■□□□□ 0.948e-11■■□□□ 12.7
CHRD-208ENST00000460627 BMP2KLQ5H9B9 411 aa20.95■□□□□ 0.94
CHRD-208ENST00000460627 CEP89Q96ST8 783 aa20.95■□□□□ 0.94
CHRD-208ENST00000460627 BABAM1Q9NWV8 329 aa20.95■□□□□ 0.94
CHRD-208ENST00000460627 KINO60870 393 aaKnown RBP20.94■□□□□ 0.94
CHRD-208ENST00000460627 IL13P35225 146 aa20.94■□□□□ 0.94
CHRD-208ENST00000460627 RPGRQ92834 1020 aaKnown RBP20.94■□□□□ 0.94
CHRD-208ENST00000460627 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.94■□□□□ 0.94
CHRD-208ENST00000460627 ATP2B1P20020 1258 aa20.94■□□□□ 0.94
CHRD-208ENST00000460627 STK38Q15208 465 aa20.94■□□□□ 0.94
CHRD-208ENST00000460627 C8orf37Q96NL8 207 aa20.94■□□□□ 0.94
CHRD-208ENST00000460627 SPINK5Q9NQ38 1064 aaPredicted RBP20.94■□□□□ 0.94
CHRD-208ENST00000460627 MEIS3Q99687 375 aa20.94■□□□□ 0.94
CHRD-208ENST00000460627 STK3Q13188 491 aa20.93■□□□□ 0.94
CHRD-208ENST00000460627 NFATC2IPQ8NCF5 419 aa20.93■□□□□ 0.94
CHRD-208ENST00000460627 LINS1Q8NG48 757 aa20.93■□□□□ 0.94
CHRD-208ENST00000460627 LARP1BQ659C4 914 aaKnown RBP20.93■□□□□ 0.94
CHRD-208ENST00000460627 NAT10Q9H0A0 1025 aaKnown RBP20.93■□□□□ 0.94
CHRD-208ENST00000460627 ANKIB1Q9P2G1 1089 aa20.93■□□□□ 0.94
CHRD-208ENST00000460627 LETM1O95202 739 aaPredicted RBP20.93■□□□□ 0.94
CHRD-208ENST00000460627 EVI5LQ96CN4 794 aa20.93■□□□□ 0.94
CHRD-208ENST00000460627 ZNF287Q9HBT7 754 aa20.93■□□□□ 0.94
CHRD-208ENST00000460627 TMOD2Q9NZR1 351 aa20.93■□□□□ 0.94
CHRD-208ENST00000460627 IPO7O95373 1038 aaKnown RBP20.93■□□□□ 0.94
CHRD-208ENST00000460627 ATP2B2Q01814 1243 aa20.93■□□□□ 0.94
CHRD-208ENST00000460627 TRAK2O60296 914 aa20.92■□□□□ 0.94
CHRD-208ENST00000460627 ANKRD44Q8N8A2 993 aa20.92■□□□□ 0.94
CHRD-208ENST00000460627 CDCA7Q9BWT1 371 aaPredicted RBP20.92■□□□□ 0.94
CHRD-208ENST00000460627 PCDH11XQ9BZA7 1347 aa20.92■□□□□ 0.94
CHRD-208ENST00000460627 PCDH11YQ9BZA8 1340 aa20.92■□□□□ 0.94
CHRD-208ENST00000460627 ARHGEF10O15013 1369 aa20.92■□□□□ 0.94
CHRD-208ENST00000460627 GRM8O00222 908 aa20.92■□□□□ 0.94
CHRD-208ENST00000460627 FIBPO43427 364 aa20.92■□□□□ 0.94
CHRD-208ENST00000460627 TXLNAP40222 546 aa20.92■□□□□ 0.94
CHRD-208ENST00000460627 EFCAB6Q5THR3 1501 aa20.92■□□□□ 0.94
CHRD-208ENST00000460627 RFC4P35249 363 aa20.92■□□□□ 0.94
CHRD-208ENST00000460627 RNMTO43148 476 aaKnown RBP20.91■□□□□ 0.94
CHRD-208ENST00000460627 NUP133Q8WUM0 1156 aa20.91■□□□□ 0.94
CHRD-208ENST00000460627 KRT85P78386 507 aa20.91■□□□□ 0.94
CHRD-208ENST00000460627 ZSCAN29Q8IWY8 852 aaPredicted RBP20.91■□□□□ 0.94
CHRD-208ENST00000460627 NCBP3Q53F19 620 aaKnown RBP20.9■□□□□ 0.94
CHRD-208ENST00000460627 PLXNC1O60486 1568 aa20.9■□□□□ 0.94
CHRD-208ENST00000460627 HECW2Q9P2P5 1572 aa20.9■□□□□ 0.94
CHRD-208ENST00000460627 OLFM4Q6UX06 510 aa20.9■□□□□ 0.94
CHRD-208ENST00000460627 DDX46Q7L014 1031 aaKnown RBP20.9■□□□□ 0.94
CHRD-208ENST00000460627 SPATA31E1Q6ZUB1 1445 aa20.9■□□□□ 0.94
CHRD-208ENST00000460627 KDM4AO75164 1064 aa20.9■□□□□ 0.94
CHRD-208ENST00000460627 CASTP20810 708 aaKnown RBP20.9■□□□□ 0.94
CHRD-208ENST00000460627 ATP6V1AP38606 617 aa20.9■□□□□ 0.94
CHRD-208ENST00000460627 STK11IPQ8N1F8 1099 aa20.9■□□□□ 0.94
CHRD-208ENST00000460627 RHPN1Q8TCX5 695 aa20.9■□□□□ 0.94
CHRD-208ENST00000460627 PCMTD1Q96MG8 357 aaPredicted RBP20.9■□□□□ 0.94
CHRD-208ENST00000460627 NAPBQ9H115 298 aa20.9■□□□□ 0.94
CHRD-208ENST00000460627 PLEKHG1Q9ULL1 1385 aa20.9■□□□□ 0.94
CHRD-208ENST00000460627 ARAP3Q8WWN8 1544 aa20.9■□□□□ 0.94
CHRD-208ENST00000460627 PRPF40AO75400 957 aaKnown RBP20.89■□□□□ 0.93
CHRD-208ENST00000460627 TTF1Q15361 905 aaPredicted RBP20.89■□□□□ 0.93
CHRD-208ENST00000460627 PRPF40BQ6NWY9 871 aaKnown RBP20.89■□□□□ 0.93
CHRD-208ENST00000460627 DZIP1Q86YF9 867 aaKnown RBP20.89■□□□□ 0.93
CHRD-208ENST00000460627 SLAIN2Q9P270 581 aa20.89■□□□□ 0.93
CHRD-208ENST00000460627 ERCC6L2Q5T890 1561 aa20.88■□□□□ 0.93
CHRD-208ENST00000460627 HMGB1P09429 215 aaKnown RBP20.88■□□□□ 0.93
CHRD-208ENST00000460627 SOGA3Q5TF21 947 aa20.88■□□□□ 0.93
CHRD-208ENST00000460627 BTG4Q9NY30 223 aa20.88■□□□□ 0.93
CHRD-208ENST00000460627 CCDC152Q4G0S7 254 aa20.88■□□□□ 0.93
CHRD-208ENST00000460627 ACSBG1Q96GR2 724 aa20.88■□□□□ 0.93
CHRD-208ENST00000460627 TSPYL6Q8N831 410 aa20.87■□□□□ 0.93
CHRD-208ENST00000460627 IGHDP01880 384 aa20.87■□□□□ 0.93
CHRD-208ENST00000460627 WASF1Q92558 559 aa20.87■□□□□ 0.93
CHRD-208ENST00000460627 ATP8B2P98198 1209 aa20.87■□□□□ 0.93
CHRD-208ENST00000460627 SLF2Q8IX21 1173 aa20.87■□□□□ 0.93
CHRD-208ENST00000460627 MYOM2P54296 1465 aa20.87■□□□□ 0.93
CHRD-208ENST00000460627 HOXB7P09629 217 aa20.87■□□□□ 0.93
CHRD-208ENST00000460627 INSRP06213 1382 aa20.87■□□□□ 0.93
CHRD-208ENST00000460627 NBPF6Q5VWK0 638 aa20.86■□□□□ 0.93
CHRD-208ENST00000460627 NBPF5PQ86XG9 351 aaPredicted RBP20.86■□□□□ 0.93
CHRD-208ENST00000460627 NBPF4Q96M43 638 aa20.86■□□□□ 0.93
CHRD-208ENST00000460627 PCDHB15Q9Y5E8 787 aa20.86■□□□□ 0.93
CHRD-208ENST00000460627 CAVIN1Q6NZI2 390 aaKnown RBP20.86■□□□□ 0.93
CHRD-208ENST00000460627 UPF3BQ9BZI7 483 aaKnown RBP20.86■□□□□ 0.93
CHRD-208ENST00000460627 USP5P45974 858 aa20.86■□□□□ 0.93
CHRD-208ENST00000460627 NUCB1Q02818 461 aa20.86■□□□□ 0.93
CHRD-208ENST00000460627 BCL11BQ9C0K0 894 aaPredicted RBP20.86■□□□□ 0.93
CHRD-208ENST00000460627 MRE11P49959 708 aa20.85■□□□□ 0.93
CHRD-208ENST00000460627 DDX21Q9NR30 783 aaKnown RBP eCLIP20.85■□□□□ 0.93
CHRD-208ENST00000460627 NOL7Q9UMY1 257 aaKnown RBP20.85■□□□□ 0.93
CHRD-208ENST00000460627 UQCRFS1P1P0C7P4 283 aa20.85■□□□□ 0.93
CHRD-208ENST00000460627 SH2B1Q9NRF2 756 aaPredicted RBP20.85■□□□□ 0.93
CHRD-208ENST00000460627 TTC22Q5TAA0 569 aa20.84■□□□□ 0.93
CHRD-208ENST00000460627 NOC3LQ8WTT2 800 aaKnown RBP20.84■□□□□ 0.93
CHRD-208ENST00000460627 RNF41Q9H4P4 317 aaPredicted RBP20.84■□□□□ 0.93
CHRD-208ENST00000460627 LDHCP07864 332 aa20.84■□□□□ 0.93
CHRD-208ENST00000460627 LMBR1LQ6UX01 489 aa20.84■□□□□ 0.93
CHRD-208ENST00000460627 CDK5RAP3Q96JB5 506 aa20.84■□□□□ 0.93
CHRD-208ENST00000460627 CFAP45Q9UL16 551 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms