RNA–Protein interactions for RNA: ENST00000460235.1

HDAC4-206, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 343 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-206ENST00000460235 RCAN3Q9UKA8 241 aa15.79■□□□□ 0.12
HDAC4-206ENST00000460235 RGPD3A6NKT7 1758 aaPredicted RBP15.78■□□□□ 0.12
HDAC4-206ENST00000460235 RGPD4Q7Z3J3 1758 aa15.78■□□□□ 0.12
HDAC4-206ENST00000460235 DDX58O95786 925 aaKnown RBP15.78■□□□□ 0.12
HDAC4-206ENST00000460235 MS4A1P11836 297 aa15.78■□□□□ 0.12
HDAC4-206ENST00000460235 EN1Q05925 392 aaPredicted RBP15.78■□□□□ 0.12
HDAC4-206ENST00000460235 CAMKK2Q96RR4 588 aa15.78■□□□□ 0.12
HDAC4-206ENST00000460235 SMC4Q9NTJ3 1288 aa15.78■□□□□ 0.12
HDAC4-206ENST00000460235 USP16Q9Y5T5 823 aa15.78■□□□□ 0.12
HDAC4-206ENST00000460235 KIF16BQ96L93 1317 aa15.77■□□□□ 0.12
HDAC4-206ENST00000460235 SLC4A2P04920 1241 aa15.77■□□□□ 0.12
HDAC4-206ENST00000460235 ADRA2BP18089 450 aa15.77■□□□□ 0.12
HDAC4-206ENST00000460235 IL6STP40189 918 aaPredicted RBP15.77■□□□□ 0.12
HDAC4-206ENST00000460235 CRKLP46109 303 aaKnown RBP15.77■□□□□ 0.12
HDAC4-206ENST00000460235 KRT24Q2M2I5 525 aa15.77■□□□□ 0.12
HDAC4-206ENST00000460235 RTCBQ9Y3I0 505 aaKnown RBP15.77■□□□□ 0.12
HDAC4-206ENST00000460235 RARSP54136 660 aaKnown RBP15.76■□□□□ 0.11
HDAC4-206ENST00000460235 BRPF1P55201 1214 aaPredicted RBP15.76■□□□□ 0.11
HDAC4-206ENST00000460235 ITPK1Q13572 414 aa15.76■□□□□ 0.11
HDAC4-206ENST00000460235 SLC4A9Q96Q91 983 aa15.76■□□□□ 0.11
HDAC4-206ENST00000460235 STK32BQ9NY57 414 aa15.76■□□□□ 0.11
HDAC4-206ENST00000460235 LY75O60449 1722 aa15.76■□□□□ 0.11
HDAC4-206ENST00000460235 RPS6KA4O75676 772 aa15.75■□□□□ 0.11
HDAC4-206ENST00000460235 CANXP27824 592 aaKnown RBP15.75■□□□□ 0.11
HDAC4-206ENST00000460235 CICQ96RK0 1608 aaPredicted RBP15.75■□□□□ 0.11
HDAC4-206ENST00000460235 TNS1Q9HBL0 1735 aaKnown RBP15.74■□□□□ 0.11
HDAC4-206ENST00000460235 PTPRCP08575 1304 aa15.74■□□□□ 0.11
HDAC4-206ENST00000460235 A1BGP04217 495 aa15.74■□□□□ 0.11
HDAC4-206ENST00000460235 EZH2Q15910 746 aaKnown RBP15.74■□□□□ 0.11
HDAC4-206ENST00000460235 KIF6Q6ZMV9 814 aa15.74■□□□□ 0.11
HDAC4-206ENST00000460235 LINC00116Q8NCU8 138 aa15.74■□□□□ 0.11
HDAC4-206ENST00000460235 NECTIN2Q92692 538 aa15.74■□□□□ 0.11
HDAC4-206ENST00000460235 TFCP2L1Q9NZI6 479 aa15.74■□□□□ 0.11
HDAC4-206ENST00000460235 CHPF2Q9P2E5 772 aa15.74■□□□□ 0.11
HDAC4-206ENST00000460235 RGL2O15211 777 aa15.73■□□□□ 0.11
HDAC4-206ENST00000460235 GNPATO15228 680 aa15.73■□□□□ 0.11
HDAC4-206ENST00000460235 SSFA2P28290 1259 aa15.73■□□□□ 0.11
HDAC4-206ENST00000460235 TRAPPC3LQ5T215 181 aa15.73■□□□□ 0.11
HDAC4-206ENST00000460235 ILDR2Q71H61 639 aa15.73■□□□□ 0.11
HDAC4-206ENST00000460235 PROM2Q8N271 834 aa15.73■□□□□ 0.11
HDAC4-206ENST00000460235 SSH1Q8WYL5 1049 aa15.73■□□□□ 0.11
HDAC4-206ENST00000460235 ARHGAP45Q92619 1136 aa15.73■□□□□ 0.11
HDAC4-206ENST00000460235 LRRC4BQ9NT99 713 aa15.73■□□□□ 0.11
HDAC4-206ENST00000460235 PRAMEF22A3QJZ6 481 aa15.72■□□□□ 0.11
HDAC4-206ENST00000460235 MYL6BP14649 208 aa15.72■□□□□ 0.11
HDAC4-206ENST00000460235 INTS5Q6P9B9 1019 aaKnown RBP15.72■□□□□ 0.11
HDAC4-206ENST00000460235 DEFB132Q7Z7B7 95 aa15.72■□□□□ 0.11
HDAC4-206ENST00000460235 ARXQ96QS3 562 aa15.72■□□□□ 0.11
HDAC4-206ENST00000460235 API5Q9BZZ5 524 aaKnown RBP15.72■□□□□ 0.11
HDAC4-206ENST00000460235 ZNF652Q9Y2D9 606 aa15.72■□□□□ 0.11
HDAC4-206ENST00000460235 ZNF330Q9Y3S2 320 aaPredicted RBP15.72■□□□□ 0.11
HDAC4-206ENST00000460235 C5P01031 1676 aa15.72■□□□□ 0.11
HDAC4-206ENST00000460235 LAMB4A4D0S4 1761 aa15.72■□□□□ 0.11
HDAC4-206ENST00000460235 CACNA1FO60840 1977 aa15.71■□□□□ 0.11
HDAC4-206ENST00000460235 ZPR1O75312 459 aa15.71■□□□□ 0.11
HDAC4-206ENST00000460235 RFC4P35249 363 aa15.71■□□□□ 0.11
HDAC4-206ENST00000460235 MRPL50Q8N5N7 158 aaKnown RBP15.71■□□□□ 0.11
HDAC4-206ENST00000460235 ZBTB1Q9Y2K1 713 aa15.71■□□□□ 0.11
HDAC4-206ENST00000460235 EIF5P55010 431 aaKnown RBP15.7■□□□□ 0.1
HDAC4-206ENST00000460235 FLIIQ13045 1269 aa15.7■□□□□ 0.1
HDAC4-206ENST00000460235 FKBP5Q13451 457 aaPredicted RBP15.7■□□□□ 0.1
HDAC4-206ENST00000460235 HSP90AB3PQ58FF7 597 aa15.7■□□□□ 0.1
HDAC4-206ENST00000460235 ZKSCAN2Q63HK3 967 aa15.7■□□□□ 0.1
HDAC4-206ENST00000460235 ERVV-1B6SEH8 477 aa15.69■□□□□ 0.1
HDAC4-206ENST00000460235 KCNQ4P56696 695 aa15.69■□□□□ 0.1
HDAC4-206ENST00000460235 NEXNQ0ZGT2 675 aa15.69■□□□□ 0.1
HDAC4-206ENST00000460235 PDIA6Q15084 440 aa15.69■□□□□ 0.1
HDAC4-206ENST00000460235 SLC15A2Q16348 729 aa15.69■□□□□ 0.1
HDAC4-206ENST00000460235 ANKRD13DQ6ZTN6 518 aa15.69■□□□□ 0.1
HDAC4-206ENST00000460235 COPS6Q7L5N1 327 aa15.69■□□□□ 0.1
HDAC4-206ENST00000460235 RIC3Q7Z5B4 369 aa15.69■□□□□ 0.1
HDAC4-206ENST00000460235 CHMP4BQ9H444 224 aaKnown RBP15.69■□□□□ 0.1
HDAC4-206ENST00000460235 TJP1Q07157 1748 aa15.68■□□□□ 0.1
HDAC4-206ENST00000460235 NBPF26B4DH59 902 aa15.68■□□□□ 0.1
HDAC4-206ENST00000460235 AIMP1Q12904 312 aaKnown RBP15.68■□□□□ 0.1
HDAC4-206ENST00000460235 NBPF10Q6P3W6 841 aaKnown RBP15.68■□□□□ 0.1
HDAC4-206ENST00000460235 DZIP3Q86Y13 1208 aaKnown RBP15.68■□□□□ 0.1
HDAC4-206ENST00000460235 NBPF15Q8N660 670 aa15.68■□□□□ 0.1
HDAC4-206ENST00000460235 PLBD2Q8NHP8 589 aa15.68■□□□□ 0.1
HDAC4-206ENST00000460235 XAGE3Q8WTP9 111 aa15.68■□□□□ 0.1
HDAC4-206ENST00000460235 FRAT1Q92837 279 aaPredicted RBP15.68■□□□□ 0.1
HDAC4-206ENST00000460235 AKT1S1Q96B36 256 aa15.68■□□□□ 0.1
HDAC4-206ENST00000460235 COL15A1P39059 1388 aa15.67■□□□□ 0.1
HDAC4-206ENST00000460235 TCERG1O14776 1098 aaKnown RBP15.67■□□□□ 0.1
HDAC4-206ENST00000460235 CLEC4GQ6UXB4 293 aa15.67■□□□□ 0.1
HDAC4-206ENST00000460235 KSR2Q6VAB6 950 aa15.67■□□□□ 0.1
HDAC4-206ENST00000460235 FTSJ3Q8IY81 847 aaKnown RBP15.67■□□□□ 0.1
HDAC4-206ENST00000460235 BCL2L13Q9BXK5 485 aa15.67■□□□□ 0.1
HDAC4-206ENST00000460235 C4BP0C0L5 1744 aa15.67■□□□□ 0.1
HDAC4-206ENST00000460235 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.66■□□□□ 0.1
HDAC4-206ENST00000460235 MSH5O43196 834 aa15.66■□□□□ 0.1
HDAC4-206ENST00000460235 BCAR3O75815 825 aa15.66■□□□□ 0.1
HDAC4-206ENST00000460235 ATF7IPQ6VMQ6 1270 aa15.66■□□□□ 0.1
HDAC4-206ENST00000460235 NARFQ9UHQ1 456 aa15.66■□□□□ 0.1
HDAC4-206ENST00000460235 NOB1Q9ULX3 412 aaKnown RBP15.66■□□□□ 0.1
HDAC4-206ENST00000460235 HDAC5Q9UQL6 1122 aa15.66■□□□□ 0.1
HDAC4-206ENST00000460235 MAP3K15Q6ZN16 1313 aa15.66■□□□□ 0.1
HDAC4-206ENST00000460235 COL5A3P25940 1745 aaPredicted RBP15.65■□□□□ 0.1
HDAC4-206ENST00000460235 PROSER3Q2NL68 480 aa15.65■□□□□ 0.1
HDAC4-206ENST00000460235 SLC16A10Q8TF71 515 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms