RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 PIGBQ92521 554 aa13.27□□□□□ -0.28
USP39-210ENST00000459775 TNNQ9UQP3 1299 aa13.27□□□□□ -0.28
USP39-210ENST00000459775 EIF4A1P60842 406 aaKnown RBP13.27□□□□□ -0.29
USP39-210ENST00000459775 ASAP1Q9ULH1 1129 aa13.27□□□□□ -0.29
USP39-210ENST00000459775 WNK3Q9BYP7 1800 aa13.26□□□□□ -0.29
USP39-210ENST00000459775 C20orf194Q5TEA3 1177 aa13.26□□□□□ -0.29
USP39-210ENST00000459775 ZNF790Q6PG37 636 aa13.26□□□□□ -0.29
USP39-210ENST00000459775 ZNF496Q96IT1 587 aaPredicted RBP13.26□□□□□ -0.29
USP39-210ENST00000459775 PTCD1O75127 700 aaKnown RBP13.25□□□□□ -0.29
USP39-210ENST00000459775 ADAMTS7Q9UKP4 1686 aa13.25□□□□□ -0.29
USP39-210ENST00000459775 TOGARAM1Q9Y4F4 1720 aa13.25□□□□□ -0.29
USP39-210ENST00000459775 ERVV-2B6SEH9 535 aa13.25□□□□□ -0.29
USP39-210ENST00000459775 FRAT1Q92837 279 aaPredicted RBP13.25□□□□□ -0.29
USP39-210ENST00000459775 CCDC136Q96JN2 1154 aa13.25□□□□□ -0.29
USP39-210ENST00000459775 TMOD3Q9NYL9 352 aa13.25□□□□□ -0.29
USP39-210ENST00000459775 PLEKHG2Q9H7P9 1386 aa13.25□□□□□ -0.29
USP39-210ENST00000459775 SCN11AQ9UI33 1791 aa13.24□□□□□ -0.29
USP39-210ENST00000459775 EIF2S2P20042 333 aaKnown RBP13.24□□□□□ -0.29
USP39-210ENST00000459775 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.24□□□□□ -0.29
USP39-210ENST00000459775 RRP1P56182 461 aaKnown RBP13.24□□□□□ -0.29
USP39-210ENST00000459775 FKBP8Q14318 412 aa13.24□□□□□ -0.29
USP39-210ENST00000459775 SMC4Q9NTJ3 1288 aa13.24□□□□□ -0.29
USP39-210ENST00000459775 CASZ1Q86V15 1759 aa13.24□□□□□ -0.29
USP39-210ENST00000459775 VIRMAQ69YN4 1812 aaKnown RBP13.23□□□□□ -0.29
USP39-210ENST00000459775 ANXA1P04083 346 aa13.23□□□□□ -0.29
USP39-210ENST00000459775 PIP4K2AP48426 406 aaPredicted RBP13.22□□□□□ -0.29
USP39-210ENST00000459775 ATG3Q9NT62 314 aa13.22□□□□□ -0.29
USP39-210ENST00000459775 MRC1P22897 1456 aa13.22□□□□□ -0.29
USP39-210ENST00000459775 GIGYF1O75420 1035 aaPredicted RBP13.22□□□□□ -0.29
USP39-210ENST00000459775 RNF123Q5XPI4 1314 aa13.22□□□□□ -0.29
USP39-210ENST00000459775 SIPA1L3O60292 1781 aaPredicted RBP13.21□□□□□ -0.29
USP39-210ENST00000459775 PLSCR1O15162 318 aa13.21□□□□□ -0.29
USP39-210ENST00000459775 TTC5Q8N0Z6 440 aa13.21□□□□□ -0.29
USP39-210ENST00000459775 CLUAP1Q96AJ1 413 aa13.21□□□□□ -0.29
USP39-210ENST00000459775 NAP1L5Q96NT1 182 aaPredicted RBP13.21□□□□□ -0.29
USP39-210ENST00000459775 BABAM1Q9NWV8 329 aa13.21□□□□□ -0.29
USP39-210ENST00000459775 KCNQ4P56696 695 aa13.21□□□□□ -0.3
USP39-210ENST00000459775 G2E3Q7L622 706 aa13.21□□□□□ -0.3
USP39-210ENST00000459775 NOB1Q9ULX3 412 aaKnown RBP13.21□□□□□ -0.3
USP39-210ENST00000459775 KAT6BQ8WYB5 2073 aa13.2□□□□□ -0.3
USP39-210ENST00000459775 BCL9O00512 1426 aa13.2□□□□□ -0.3
USP39-210ENST00000459775 PAXIP1Q6ZW49 1069 aaPredicted RBP13.2□□□□□ -0.3
USP39-210ENST00000459775 MRPL50Q8N5N7 158 aaKnown RBP13.2□□□□□ -0.3
USP39-210ENST00000459775 SLC4A9Q96Q91 983 aa13.2□□□□□ -0.3
USP39-210ENST00000459775 RBM42Q9BTD8 480 aaKnown RBP13.2□□□□□ -0.3
USP39-210ENST00000459775 USP16Q9Y5T5 823 aa13.2□□□□□ -0.3
USP39-210ENST00000459775 KDM3BQ7LBC6 1761 aa13.2□□□□□ -0.3
USP39-210ENST00000459775 SLC4A2P04920 1241 aa13.19□□□□□ -0.3
USP39-210ENST00000459775 PROSER3Q2NL68 480 aa13.19□□□□□ -0.3
USP39-210ENST00000459775 PANK1Q8TE04 598 aa13.19□□□□□ -0.3
USP39-210ENST00000459775 RLBP1P12271 317 aa13.19□□□□□ -0.3
USP39-210ENST00000459775 HDGFL1Q5TGJ6 251 aa13.19□□□□□ -0.3
USP39-210ENST00000459775 HEG1Q9ULI3 1381 aa13.19□□□□□ -0.3
USP39-210ENST00000459775 DOT1LQ8TEK3 1739 aa13.18□□□□□ -0.3
USP39-210ENST00000459775 CT47B1P0C2W7 299 aaPredicted RBP13.18□□□□□ -0.3
USP39-210ENST00000459775 CANXP27824 592 aaKnown RBP13.18□□□□□ -0.3
USP39-210ENST00000459775 FMNL2Q96PY5 1086 aa13.18□□□□□ -0.3
USP39-210ENST00000459775 CHPF2Q9P2E5 772 aa13.18□□□□□ -0.3
USP39-210ENST00000459775 PHAXQ9H814 394 aaKnown RBP13.17□□□□□ -0.3
USP39-210ENST00000459775 ALDH1L2Q3SY69 923 aa13.16□□□□□ -0.3
USP39-210ENST00000459775 DNAJC10Q8IXB1 793 aa13.16□□□□□ -0.3
USP39-210ENST00000459775 KCPQ6ZWJ8 1503 aa13.16□□□□□ -0.3
USP39-210ENST00000459775 ITGB4P16144 1822 aa13.16□□□□□ -0.3
USP39-210ENST00000459775 SNRPA1P09661 255 aaKnown RBP13.16□□□□□ -0.3
USP39-210ENST00000459775 TRIM27P14373 513 aa13.16□□□□□ -0.3
USP39-210ENST00000459775 EXOC6Q8TAG9 804 aa13.16□□□□□ -0.3
USP39-210ENST00000459775 CRBNQ96SW2 442 aa13.16□□□□□ -0.3
USP39-210ENST00000459775 A1BGP04217 495 aa13.15□□□□□ -0.3
USP39-210ENST00000459775 MYL6BP14649 208 aa13.15□□□□□ -0.3
USP39-210ENST00000459775 CCDC30Q5VVM6 783 aa13.15□□□□□ -0.3
USP39-210ENST00000459775 SBF2Q86WG5 1849 aa13.15□□□□□ -0.3
USP39-210ENST00000459775 F6X3S4 739 aa13.15□□□□□ -0.3
USP39-210ENST00000459775 ZNF784Q8NCA9 323 aaPredicted RBP13.15□□□□□ -0.3
USP39-210ENST00000459775 ZNF428Q96B54 188 aa13.15□□□□□ -0.3
USP39-210ENST00000459775 RBM10P98175 930 aaKnown RBP13.14□□□□□ -0.31
USP39-210ENST00000459775 PDIA6Q15084 440 aa13.14□□□□□ -0.31
USP39-210ENST00000459775 COG6Q9Y2V7 657 aa13.14□□□□□ -0.31
USP39-210ENST00000459775 C5P01031 1676 aa13.14□□□□□ -0.31
USP39-210ENST00000459775 ZKSCAN2Q63HK3 967 aa13.13□□□□□ -0.31
USP39-210ENST00000459775 STK31Q9BXU1 1019 aa13.13□□□□□ -0.31
USP39-210ENST00000459775 NBPF26B4DH59 902 aa13.13□□□□□ -0.31
USP39-210ENST00000459775 AIMP1Q12904 312 aaKnown RBP13.13□□□□□ -0.31
USP39-210ENST00000459775 NBPF10Q6P3W6 841 aaKnown RBP13.13□□□□□ -0.31
USP39-210ENST00000459775 ATF7IPQ6VMQ6 1270 aa13.13□□□□□ -0.31
USP39-210ENST00000459775 SMIM5Q71RC9 77 aa13.13□□□□□ -0.31
USP39-210ENST00000459775 NBPF15Q8N660 670 aa13.13□□□□□ -0.31
USP39-210ENST00000459775 PALLDQ8WX93 1383 aa13.12□□□□□ -0.31
USP39-210ENST00000459775 A0A0U1RQG5 324 aaPredicted RBP13.12□□□□□ -0.31
USP39-210ENST00000459775 ITPK1Q13572 414 aa13.12□□□□□ -0.31
USP39-210ENST00000459775 STK32BQ9NY57 414 aa13.12□□□□□ -0.31
USP39-210ENST00000459775 PAPPAQ13219 1627 aa13.12□□□□□ -0.31
USP39-210ENST00000459775 LOC102724428A0A0B4J2F2 783 aa13.12□□□□□ -0.31
USP39-210ENST00000459775 HOXB7P09629 217 aa13.12□□□□□ -0.31
USP39-210ENST00000459775 SIK1P57059 783 aa13.12□□□□□ -0.31
USP39-210ENST00000459775 FLIIQ13045 1269 aa13.12□□□□□ -0.31
USP39-210ENST00000459775 ZNF330Q9Y3S2 320 aaPredicted RBP13.12□□□□□ -0.31
USP39-210ENST00000459775 CHD4Q14839 1912 aa13.11□□□□□ -0.31
USP39-210ENST00000459775 ATP6V1AP38606 617 aa13.11□□□□□ -0.31
USP39-210ENST00000459775 C1QTNF8P60827 252 aa13.11□□□□□ -0.31
USP39-210ENST00000459775 TMEM57Q8N5G2 664 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms