RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 DCTN1Q14203 1278 aa22.91■■□□□ 1.26
USP39-208ENST00000455732 ZNF784Q8NCA9 323 aaPredicted RBP22.91■■□□□ 1.26
USP39-208ENST00000455732 USP42Q9H9J4 1324 aaKnown RBP22.9■■□□□ 1.26
USP39-208ENST00000455732 ZBTB1Q9Y2K1 713 aa22.9■■□□□ 1.26
USP39-208ENST00000455732 KCNQ3O43525 872 aa22.89■■□□□ 1.25
USP39-208ENST00000455732 SRP68Q9UHB9 627 aaKnown RBP22.89■■□□□ 1.25
USP39-208ENST00000455732 ADAMTS8Q9UP79 889 aa22.89■■□□□ 1.25
USP39-208ENST00000455732 KIAA1551Q9HCM1 1747 aa22.88■■□□□ 1.25
USP39-208ENST00000455732 ANP32CO43423 234 aa22.88■■□□□ 1.25
USP39-208ENST00000455732 PELP1Q8IZL8 1130 aaKnown RBP22.88■■□□□ 1.25
USP39-208ENST00000455732 RUNDC1Q96C34 613 aa22.88■■□□□ 1.25
USP39-208ENST00000455732 FMNL2Q96PY5 1086 aa22.88■■□□□ 1.25
USP39-208ENST00000455732 TMPOP42166 694 aaKnown RBP22.87■■□□□ 1.25
USP39-208ENST00000455732 STARD3NLO95772 234 aa22.86■■□□□ 1.25
USP39-208ENST00000455732 TAF7Q15545 349 aaPredicted RBP22.86■■□□□ 1.25
USP39-208ENST00000455732 TEX13AQ9BXU3 409 aaPredicted RBP22.86■■□□□ 1.25
USP39-208ENST00000455732 COL15A1P39059 1388 aa22.86■■□□□ 1.25
USP39-208ENST00000455732 YBX3P16989 372 aaKnown RBP eCLIP22.85■■□□□ 1.25
USP39-208ENST00000455732 RIPK4P57078 832 aa22.85■■□□□ 1.25
USP39-208ENST00000455732 LMOD3Q0VAK6 560 aa22.85■■□□□ 1.25
USP39-208ENST00000455732 FKBP8Q14318 412 aa22.85■■□□□ 1.25
USP39-208ENST00000455732 CCDC146Q8IYE0 955 aa22.85■■□□□ 1.25
USP39-208ENST00000455732 KDM3BQ7LBC6 1761 aa22.85■■□□□ 1.25
USP39-208ENST00000455732 N4BP2Q86UW6 1770 aaPredicted RBP22.85■■□□□ 1.25
USP39-208ENST00000455732 PNISRQ8TF01 805 aaKnown RBP22.84■■□□□ 1.25
USP39-208ENST00000455732 C10orf71Q711Q0 1435 aa22.83■■□□□ 1.25
USP39-208ENST00000455732 AFDNP55196 1824 aaKnown RBP22.83■■□□□ 1.25
USP39-208ENST00000455732 CANXP27824 592 aaKnown RBP22.83■■□□□ 1.25
USP39-208ENST00000455732 EIF5P55010 431 aaKnown RBP22.83■■□□□ 1.25
USP39-208ENST00000455732 NARFQ9UHQ1 456 aa22.83■■□□□ 1.25
USP39-208ENST00000455732 BRCA1P38398 1863 aaKnown RBP22.82■■□□□ 1.24
USP39-208ENST00000455732 ZPR1O75312 459 aa22.82■■□□□ 1.24
USP39-208ENST00000455732 USPL1Q5W0Q7 1092 aa22.82■■□□□ 1.24
USP39-208ENST00000455732 THUMPD2Q9BTF0 503 aaKnown RBP22.82■■□□□ 1.24
USP39-208ENST00000455732 PARP3Q9Y6F1 533 aa22.82■■□□□ 1.24
USP39-208ENST00000455732 DDR1Q08345 913 aa22.81■■□□□ 1.24
USP39-208ENST00000455732 CCDC184Q52MB2 194 aa22.81■■□□□ 1.24
USP39-208ENST00000455732 PXDNLA1KZ92 1463 aa22.8■■□□□ 1.24
USP39-208ENST00000455732 TM4SF1P30408 202 aa22.8■■□□□ 1.24
USP39-208ENST00000455732 BCL2L12Q9HB09 334 aa22.8■■□□□ 1.24
USP39-208ENST00000455732 SCN7AQ01118 1682 aa22.8■■□□□ 1.24
USP39-208ENST00000455732 NRXN2Q9P2S2 1712 aa22.79■■□□□ 1.24
USP39-208ENST00000455732 LAMB4A4D0S4 1761 aa22.79■■□□□ 1.24
USP39-208ENST00000455732 SNRPA1P09661 255 aaKnown RBP22.79■■□□□ 1.24
USP39-208ENST00000455732 USP16Q9Y5T5 823 aa22.79■■□□□ 1.24
USP39-208ENST00000455732 PRAMEF22A3QJZ6 481 aa22.78■■□□□ 1.24
USP39-208ENST00000455732 GRIN3BO60391 1043 aa22.78■■□□□ 1.24
USP39-208ENST00000455732 A1BGP04217 495 aa22.78■■□□□ 1.24
USP39-208ENST00000455732 IL6STP40189 918 aaPredicted RBP22.78■■□□□ 1.24
USP39-208ENST00000455732 BABAM1Q9NWV8 329 aa22.78■■□□□ 1.24
USP39-208ENST00000455732 MIS18AQ9NYP9 233 aa22.78■■□□□ 1.24
USP39-208ENST00000455732 RRP7AQ9Y3A4 280 aaKnown RBP22.78■■□□□ 1.24
USP39-208ENST00000455732 POLRMTO00411 1230 aaKnown RBP22.77■■□□□ 1.24
USP39-208ENST00000455732 TGFB2P61812 414 aa22.77■■□□□ 1.24
USP39-208ENST00000455732 TRIM35Q9UPQ4 493 aa22.77■■□□□ 1.24
USP39-208ENST00000455732 BCORQ6W2J9 1755 aa22.76■■□□□ 1.23
USP39-208ENST00000455732 A0A087WZG4 1122 aa22.76■■□□□ 1.23
USP39-208ENST00000455732 MRS2Q9HD23 443 aa22.76■■□□□ 1.23
USP39-208ENST00000455732 NFIXQ14938 502 aa22.75■■□□□ 1.23
USP39-208ENST00000455732 NEUROD2Q15784 382 aa22.75■■□□□ 1.23
USP39-208ENST00000455732 EIF4A1P60842 406 aaKnown RBP22.74■■□□□ 1.23
USP39-208ENST00000455732 TSPYL4Q9UJ04 414 aa22.73■■□□□ 1.23
USP39-208ENST00000455732 WWC3Q9ULE0 1092 aa22.73■■□□□ 1.23
USP39-208ENST00000455732 A0A0G2JLW4 131 aa22.72■■□□□ 1.23
USP39-208ENST00000455732 APAF1O14727 1248 aa22.72■■□□□ 1.23
USP39-208ENST00000455732 TBC1D2BQ9UPU7 963 aa22.72■■□□□ 1.23
USP39-208ENST00000455732 ZNF330Q9Y3S2 320 aaPredicted RBP22.72■■□□□ 1.23
USP39-208ENST00000455732 ARFGEF1Q9Y6D6 1849 aa22.72■■□□□ 1.23
USP39-208ENST00000455732 GIGYF1O75420 1035 aaPredicted RBP22.71■■□□□ 1.23
USP39-208ENST00000455732 DPEP1P16444 411 aa22.71■■□□□ 1.23
USP39-208ENST00000455732 KCNA3P22001 575 aa22.7■■□□□ 1.22
USP39-208ENST00000455732 PIP4K2AP48426 406 aaPredicted RBP22.7■■□□□ 1.22
USP39-208ENST00000455732 NBPF26B4DH59 902 aa22.69■■□□□ 1.22
USP39-208ENST00000455732 CAMTA2O94983 1202 aa22.69■■□□□ 1.22
USP39-208ENST00000455732 C1QTNF8P60827 252 aa22.69■■□□□ 1.22
USP39-208ENST00000455732 NBPF10Q6P3W6 841 aaKnown RBP22.69■■□□□ 1.22
USP39-208ENST00000455732 NBPF15Q8N660 670 aa22.69■■□□□ 1.22
USP39-208ENST00000455732 DLEC1Q9Y238 1755 aa22.68■■□□□ 1.22
USP39-208ENST00000455732 CHL1O00533 1208 aa22.68■■□□□ 1.22
USP39-208ENST00000455732 SERPINB2P05120 415 aa22.68■■□□□ 1.22
USP39-208ENST00000455732 TBC1D9BQ66K14 1250 aa22.68■■□□□ 1.22
USP39-208ENST00000455732 ANKRD31Q8N7Z5 1873 aa22.68■■□□□ 1.22
USP39-208ENST00000455732 NPM2Q86SE8 214 aaKnown RBP22.67■■□□□ 1.22
USP39-208ENST00000455732 DZIP3Q86Y13 1208 aaKnown RBP22.67■■□□□ 1.22
USP39-208ENST00000455732 SENP3-EIF4A1A0A087X0R7 540 aa22.66■■□□□ 1.22
USP39-208ENST00000455732 NCBP3Q53F19 620 aaKnown RBP22.66■■□□□ 1.22
USP39-208ENST00000455732 BICDL1Q6ZP65 573 aa22.66■■□□□ 1.22
USP39-208ENST00000455732 CALD1Q05682 793 aaKnown RBP22.65■■□□□ 1.22
USP39-208ENST00000455732 CFAP44Q96MT7 982 aa22.65■■□□□ 1.22
USP39-208ENST00000455732 BCS1LQ9Y276 419 aa22.64■■□□□ 1.21
USP39-208ENST00000455732 NUP98P52948 1817 aa22.64■■□□□ 1.21
USP39-208ENST00000455732 CARMIL3Q8ND23 1372 aa22.63■■□□□ 1.21
USP39-208ENST00000455732 ERBB4Q15303 1308 aa22.63■■□□□ 1.21
USP39-208ENST00000455732 RGL2O15211 777 aa22.63■■□□□ 1.21
USP39-208ENST00000455732 ZNF853P0CG23 659 aa22.63■■□□□ 1.21
USP39-208ENST00000455732 CHRNA5P30532 468 aa22.63■■□□□ 1.21
USP39-208ENST00000455732 CCDC27Q2M243 656 aa22.63■■□□□ 1.21
USP39-208ENST00000455732 PIM2Q9P1W9 311 aa22.63■■□□□ 1.21
USP39-208ENST00000455732 CLEC4GQ6UXB4 293 aa22.62■■□□□ 1.21
USP39-208ENST00000455732 IFT57Q9NWB7 429 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms