RNA–Protein interactions for RNA: ENST00000451492.5

USP54-207, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 509 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-207ENST00000451492 CANXP27824 592 aaKnown RBP12.87□□□□□ -0.35
USP54-207ENST00000451492 ZNF790Q6PG37 636 aa12.87□□□□□ -0.35
USP54-207ENST00000451492 ZNF496Q96IT1 587 aaPredicted RBP12.87□□□□□ -0.35
USP54-207ENST00000451492 SOS1Q07889 1333 aaPredicted RBP12.87□□□□□ -0.35
USP54-207ENST00000451492 USP42Q9H9J4 1324 aaKnown RBP12.87□□□□□ -0.35
USP54-207ENST00000451492 USPL1Q5W0Q7 1092 aa12.86□□□□□ -0.35
USP54-207ENST00000451492 CD2APQ9Y5K6 639 aa12.86□□□□□ -0.35
USP54-207ENST00000451492 PARP3Q9Y6F1 533 aa12.86□□□□□ -0.35
USP54-207ENST00000451492 MAPK8IP3Q9UPT6 1336 aa12.86□□□□□ -0.35
USP54-207ENST00000451492 CACNA1SQ13698 1873 aa12.85□□□□□ -0.35
USP54-207ENST00000451492 ZPR1O75312 459 aa12.85□□□□□ -0.35
USP54-207ENST00000451492 FKBP8Q14318 412 aa12.85□□□□□ -0.35
USP54-207ENST00000451492 RALBP1Q15311 655 aa12.85□□□□□ -0.35
USP54-207ENST00000451492 NLGN1Q8N2Q7 840 aa12.85□□□□□ -0.35
USP54-207ENST00000451492 C10orf71Q711Q0 1435 aa12.85□□□□□ -0.35
USP54-207ENST00000451492 MYBBP1AQ9BQG0 1328 aaKnown RBP12.85□□□□□ -0.35
USP54-207ENST00000451492 PXDNLA1KZ92 1463 aa12.85□□□□□ -0.35
USP54-207ENST00000451492 PIP4K2AP48426 406 aaPredicted RBP12.84□□□□□ -0.35
USP54-207ENST00000451492 VSIG10Q8N0Z9 540 aa12.84□□□□□ -0.35
USP54-207ENST00000451492 FMNL2Q96PY5 1086 aa12.84□□□□□ -0.35
USP54-207ENST00000451492 PRAMEF22A3QJZ6 481 aa12.83□□□□□ -0.36
USP54-207ENST00000451492 THUMPD2Q9BTF0 503 aaKnown RBP12.83□□□□□ -0.36
USP54-207ENST00000451492 ARFGEF1Q9Y6D6 1849 aa12.83□□□□□ -0.36
USP54-207ENST00000451492 NRXN2Q9P2S2 1712 aa12.82□□□□□ -0.36
USP54-207ENST00000451492 STARD3NLO95772 234 aa12.82□□□□□ -0.36
USP54-207ENST00000451492 DDR1Q08345 913 aa12.82□□□□□ -0.36
USP54-207ENST00000451492 CCDC146Q8IYE0 955 aa12.82□□□□□ -0.36
USP54-207ENST00000451492 PLEKHF1Q96S99 279 aa12.82□□□□□ -0.36
USP54-207ENST00000451492 MIS18AQ9NYP9 233 aa12.82□□□□□ -0.36
USP54-207ENST00000451492 DLEC1Q9Y238 1755 aa12.81□□□□□ -0.36
USP54-207ENST00000451492 ANKRD31Q8N7Z5 1873 aa12.81□□□□□ -0.36
USP54-207ENST00000451492 A0A0G2JLW4 131 aa12.81□□□□□ -0.36
USP54-207ENST00000451492 NFE2L2Q16236 605 aa12.81□□□□□ -0.36
USP54-207ENST00000451492 BICDL1Q6ZP65 573 aa12.81□□□□□ -0.36
USP54-207ENST00000451492 GRIN3BO60391 1043 aa12.8□□□□□ -0.36
USP54-207ENST00000451492 A1BGP04217 495 aa12.8□□□□□ -0.36
USP54-207ENST00000451492 NPM2Q86SE8 214 aaKnown RBP12.8□□□□□ -0.36
USP54-207ENST00000451492 ZNF784Q8NCA9 323 aaPredicted RBP12.8□□□□□ -0.36
USP54-207ENST00000451492 NARFQ9UHQ1 456 aa12.8□□□□□ -0.36
USP54-207ENST00000451492 TBC1D2BQ9UPU7 963 aa12.8□□□□□ -0.36
USP54-207ENST00000451492 COL11A2P13942 1736 aaPredicted RBP12.79□□□□□ -0.36
USP54-207ENST00000451492 POLRMTO00411 1230 aaKnown RBP12.79□□□□□ -0.36
USP54-207ENST00000451492 DPEP1P16444 411 aa12.79□□□□□ -0.36
USP54-207ENST00000451492 ZEB1P37275 1124 aaPredicted RBP12.79□□□□□ -0.36
USP54-207ENST00000451492 WDR43Q15061 677 aaKnown RBP eCLIP12.79□□□□□ -0.36
USP54-207ENST00000451492 NEUROD2Q15784 382 aa12.79□□□□□ -0.36
USP54-207ENST00000451492 TEX13AQ9BXU3 409 aaPredicted RBP12.79□□□□□ -0.36
USP54-207ENST00000451492 PNNQ9H307 717 aaKnown RBP12.79□□□□□ -0.36
USP54-207ENST00000451492 BCS1LQ9Y276 419 aa12.79□□□□□ -0.36
USP54-207ENST00000451492 RRP7AQ9Y3A4 280 aaKnown RBP12.79□□□□□ -0.36
USP54-207ENST00000451492 USP16Q9Y5T5 823 aa12.79□□□□□ -0.36
USP54-207ENST00000451492 HTATSF1O43719 755 aaKnown RBP12.78□□□□□ -0.36
USP54-207ENST00000451492 EIF5P55010 431 aaKnown RBP12.78□□□□□ -0.36
USP54-207ENST00000451492 NFIXQ14938 502 aa12.78□□□□□ -0.36
USP54-207ENST00000451492 TAF7Q15545 349 aaPredicted RBP12.78□□□□□ -0.36
USP54-207ENST00000451492 BCL2L12Q9HB09 334 aa12.78□□□□□ -0.36
USP54-207ENST00000451492 NUP98P52948 1817 aa12.77□□□□□ -0.37
USP54-207ENST00000451492 A0A087WZG4 1122 aa12.77□□□□□ -0.37
USP54-207ENST00000451492 RIPK4P57078 832 aa12.77□□□□□ -0.37
USP54-207ENST00000451492 TGFB2P61812 414 aa12.77□□□□□ -0.37
USP54-207ENST00000451492 PRKRIP1Q9H875 184 aaPredicted RBP12.77□□□□□ -0.37
USP54-207ENST00000451492 CARMIL3Q8ND23 1372 aa12.77□□□□□ -0.37
USP54-207ENST00000451492 SNRPA1P09661 255 aaKnown RBP12.76□□□□□ -0.37
USP54-207ENST00000451492 TM4SF1P30408 202 aa12.76□□□□□ -0.37
USP54-207ENST00000451492 CHRNA5P30532 468 aa12.76□□□□□ -0.37
USP54-207ENST00000451492 IL6STP40189 918 aaPredicted RBP12.76□□□□□ -0.37
USP54-207ENST00000451492 TBC1D9BQ66K14 1250 aa12.76□□□□□ -0.37
USP54-207ENST00000451492 DZIP3Q86Y13 1208 aaKnown RBP12.76□□□□□ -0.37
USP54-207ENST00000451492 CCDC24Q8N4L8 307 aa12.76□□□□□ -0.37
USP54-207ENST00000451492 NPHP1O15259 732 aa12.75□□□□□ -0.37
USP54-207ENST00000451492 SERPINB2P05120 415 aa12.75□□□□□ -0.37
USP54-207ENST00000451492 CCDC88AQ3V6T2 1871 aa12.75□□□□□ -0.37
USP54-207ENST00000451492 NGEFQ8N5V2 710 aa12.75□□□□□ -0.37
USP54-207ENST00000451492 ZNF526Q8TF50 670 aaPredicted RBP12.75□□□□□ -0.37
USP54-207ENST00000451492 ATP10DQ9P241 1426 aa12.74□□□□□ -0.37
USP54-207ENST00000451492 TMPOP42166 694 aaKnown RBP12.74□□□□□ -0.37
USP54-207ENST00000451492 PNISRQ8TF01 805 aaKnown RBP12.74□□□□□ -0.37
USP54-207ENST00000451492 TSPYL4Q9UJ04 414 aa12.74□□□□□ -0.37
USP54-207ENST00000451492 CAMTA2O94983 1202 aa12.73□□□□□ -0.37
USP54-207ENST00000451492 ADAMTS8Q9UP79 889 aa12.73□□□□□ -0.37
USP54-207ENST00000451492 LAS1LQ9Y4W2 734 aaKnown RBP12.73□□□□□ -0.37
USP54-207ENST00000451492 SBF1O95248 1867 aa12.73□□□□□ -0.37
USP54-207ENST00000451492 TIAM2Q8IVF5 1701 aa12.73□□□□□ -0.37
USP54-207ENST00000451492 ARFGEF2Q9Y6D5 1785 aa12.72□□□□□ -0.37
USP54-207ENST00000451492 SENP3-EIF4A1A0A087X0R7 540 aa12.72□□□□□ -0.37
USP54-207ENST00000451492 FAM177BA6PVY3 158 aa12.72□□□□□ -0.37
USP54-207ENST00000451492 NBPF26B4DH59 902 aa12.72□□□□□ -0.37
USP54-207ENST00000451492 MYL6BP14649 208 aa12.72□□□□□ -0.37
USP54-207ENST00000451492 KCNA3P22001 575 aa12.72□□□□□ -0.37
USP54-207ENST00000451492 EIF4A1P60842 406 aaKnown RBP12.72□□□□□ -0.37
USP54-207ENST00000451492 LMOD3Q0VAK6 560 aa12.72□□□□□ -0.37
USP54-207ENST00000451492 NBPF10Q6P3W6 841 aaKnown RBP12.72□□□□□ -0.37
USP54-207ENST00000451492 ARHGAP27Q6ZUM4 889 aa12.72□□□□□ -0.37
USP54-207ENST00000451492 NBPF15Q8N660 670 aa12.72□□□□□ -0.37
USP54-207ENST00000451492 RUNDC1Q96C34 613 aa12.72□□□□□ -0.37
USP54-207ENST00000451492 PIM2Q9P1W9 311 aa12.72□□□□□ -0.37
USP54-207ENST00000451492 ANKRD36CQ5JPF3 1778 aa12.71□□□□□ -0.37
USP54-207ENST00000451492 TNRC6CQ9HCJ0 1690 aaKnown RBP12.71□□□□□ -0.37
USP54-207ENST00000451492 DALRD3Q5D0E6 543 aaKnown RBP12.71□□□□□ -0.37
USP54-207ENST00000451492 ADCY9O60503 1353 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms