RNA–Protein interactions for RNA: ENST00000448940.5

CDC42BPA-209, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 7,355 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-209ENST00000448940 SLC4A2P04920 1241 aa6.87□□□□□ -1.31
CDC42BPA-209ENST00000448940 MCCP23508 829 aa6.87□□□□□ -1.31
CDC42BPA-209ENST00000448940 CCDC158Q5M9N0 1113 aa6.87□□□□□ -1.31
CDC42BPA-209ENST00000448940 MADDQ8WXG6 1647 aa6.87□□□□□ -1.31
CDC42BPA-209ENST00000448940 FAM135BQ49AJ0 1406 aa6.86□□□□□ -1.31
CDC42BPA-209ENST00000448940 MAP3K4Q9Y6R4 1608 aa6.86□□□□□ -1.31
CDC42BPA-209ENST00000448940 EZH2Q15910 746 aaKnown RBP6.86□□□□□ -1.31
CDC42BPA-209ENST00000448940 ANKRD18AQ8IVF6 992 aa6.86□□□□□ -1.31
CDC42BPA-209ENST00000448940 ANKRD36BQ8N2N9 1353 aa6.86□□□□□ -1.31
CDC42BPA-209ENST00000448940 ANKRD18BA2A2Z9 1011 aa6.86□□□□□ -1.31
CDC42BPA-209ENST00000448940 EIF4E1BA6NMX2 242 aaKnown RBP6.86□□□□□ -1.31
CDC42BPA-209ENST00000448940 BMS1Q14692 1282 aaKnown RBP6.86□□□□□ -1.31
CDC42BPA-209ENST00000448940 SYNE3Q6ZMZ3 975 aa6.86□□□□□ -1.31
CDC42BPA-209ENST00000448940 ARID3AQ99856 593 aa6.86□□□□□ -1.31
CDC42BPA-209ENST00000448940 PDE3AQ14432 1141 aa6.86□□□□□ -1.31
CDC42BPA-209ENST00000448940 ZKSCAN2Q63HK3 967 aa6.86□□□□□ -1.31
CDC42BPA-209ENST00000448940 ADGRL2O95490 1459 aa6.86□□□□□ -1.31
CDC42BPA-209ENST00000448940 TNS3Q68CZ2 1445 aa6.86□□□□□ -1.31
CDC42BPA-209ENST00000448940 ERVV-2B6SEH9 535 aa6.85□□□□□ -1.31
CDC42BPA-209ENST00000448940 PARP10Q53GL7 1025 aa6.85□□□□□ -1.31
CDC42BPA-209ENST00000448940 METTL24Q5JXM2 366 aa6.85□□□□□ -1.31
CDC42BPA-209ENST00000448940 DZIP1Q86YF9 867 aaKnown RBP6.85□□□□□ -1.31
CDC42BPA-209ENST00000448940 PLEKHH1Q9ULM0 1364 aa6.85□□□□□ -1.31
CDC42BPA-209ENST00000448940 ARHGEF25Q86VW2 580 aa6.85□□□□□ -1.31
CDC42BPA-209ENST00000448940 TTC16Q8NEE8 873 aa6.85□□□□□ -1.31
CDC42BPA-209ENST00000448940 HOOK2Q96ED9 719 aa6.85□□□□□ -1.31
CDC42BPA-209ENST00000448940 SBNO1A3KN83 1393 aa6.85□□□□□ -1.31
CDC42BPA-209ENST00000448940 EYA1Q99502 592 aa6.85□□□□□ -1.31
CDC42BPA-209ENST00000448940 PPP4R2Q9NY27 417 aa6.85□□□□□ -1.31
CDC42BPA-209ENST00000448940 NCOA3Q9Y6Q9 1424 aa6.85□□□□□ -1.31
CDC42BPA-209ENST00000448940 FMNL1O95466 1100 aaPredicted RBP6.85□□□□□ -1.31
CDC42BPA-209ENST00000448940 MMP10P09238 476 aa6.85□□□□□ -1.31
CDC42BPA-209ENST00000448940 RAI14Q9P0K7 980 aa6.85□□□□□ -1.31
CDC42BPA-209ENST00000448940 DPP8Q6V1X1 898 aaPredicted RBP6.85□□□□□ -1.31
CDC42BPA-209ENST00000448940 MYD88Q99836 296 aa6.85□□□□□ -1.31
CDC42BPA-209ENST00000448940 ABCF2Q9UG63 623 aa6.85□□□□□ -1.31
CDC42BPA-209ENST00000448940 KIF16BQ96L93 1317 aa6.85□□□□□ -1.31
CDC42BPA-209ENST00000448940 ERICH2A1L162 156 aa6.85□□□□□ -1.31
CDC42BPA-209ENST00000448940 MIS18AQ9NYP9 233 aa6.85□□□□□ -1.31
CDC42BPA-209ENST00000448940 PREX2Q70Z35 1606 aa6.84□□□□□ -1.31
CDC42BPA-209ENST00000448940 LDHCP07864 332 aa6.84□□□□□ -1.31
CDC42BPA-209ENST00000448940 FBLN1P23142 703 aa6.84□□□□□ -1.31
CDC42BPA-209ENST00000448940 TNIP1Q15025 636 aa6.84□□□□□ -1.31
CDC42BPA-209ENST00000448940 RRAGCQ9HB90 399 aa6.84□□□□□ -1.31
CDC42BPA-209ENST00000448940 CEP170BQ9Y4F5 1589 aaPredicted RBP6.84□□□□□ -1.31
CDC42BPA-209ENST00000448940 C1orf167Q5SNV9 1468 aa6.84□□□□□ -1.31
CDC42BPA-209ENST00000448940 EIF4A2Q14240 407 aaKnown RBP6.84□□□□□ -1.31
CDC42BPA-209ENST00000448940 DNAJC10Q8IXB1 793 aa6.84□□□□□ -1.31
CDC42BPA-209ENST00000448940 CIZ1Q9ULV3 898 aaPredicted RBP6.84□□□□□ -1.31
CDC42BPA-209ENST00000448940 NR2E3Q9Y5X4 410 aa6.84□□□□□ -1.31
CDC42BPA-209ENST00000448940 STK24Q9Y6E0 443 aa6.84□□□□□ -1.31
CDC42BPA-209ENST00000448940 CWC25Q9NXE8 425 aaPredicted RBP6.84□□□□□ -1.31
CDC42BPA-209ENST00000448940 RWDD1Q9H446 243 aaPredicted RBP6.84□□□□□ -1.31
CDC42BPA-209ENST00000448940 CABP5Q9NP86 173 aa6.84□□□□□ -1.31
CDC42BPA-209ENST00000448940 LRP2BPQ9P2M1 347 aa6.84□□□□□ -1.31
CDC42BPA-209ENST00000448940 TRDNQ13061 729 aa6.84□□□□□ -1.32
CDC42BPA-209ENST00000448940 PPM1EQ8WY54 764 aa6.84□□□□□ -1.32
CDC42BPA-209ENST00000448940 TMOD4Q9NZQ9 345 aa6.83□□□□□ -1.32
CDC42BPA-209ENST00000448940 TTC39AQ5SRH9 613 aa6.83□□□□□ -1.32
CDC42BPA-209ENST00000448940 TTLL6Q8N841 843 aa6.83□□□□□ -1.32
CDC42BPA-209ENST00000448940 MTFR1LQ9H019 292 aa6.83□□□□□ -1.32
CDC42BPA-209ENST00000448940 PODXL2Q9NZ53 605 aa6.83□□□□□ -1.32
CDC42BPA-209ENST00000448940 ZBTB24O43167 697 aaPredicted RBP6.83□□□□□ -1.32
CDC42BPA-209ENST00000448940 BRDTQ58F21 947 aaPredicted RBP6.83□□□□□ -1.32
CDC42BPA-209ENST00000448940 CLASRPQ8N2M8 674 aaKnown RBP6.83□□□□□ -1.32
CDC42BPA-209ENST00000448940 SLC10A4Q96EP9 437 aa6.83□□□□□ -1.32
CDC42BPA-209ENST00000448940 ANKARQ7Z5J8 1434 aa6.83□□□□□ -1.32
CDC42BPA-209ENST00000448940 DUSP27Q5VZP5 1158 aa6.83□□□□□ -1.32
CDC42BPA-209ENST00000448940 USP5P45974 858 aa6.83□□□□□ -1.32
CDC42BPA-209ENST00000448940 POTEAQ6S8J7 498 aa6.83□□□□□ -1.32
CDC42BPA-209ENST00000448940 ANKRD13DQ6ZTN6 518 aa6.83□□□□□ -1.32
CDC42BPA-209ENST00000448940 SMC1BQ8NDV3 1235 aa6.83□□□□□ -1.32
CDC42BPA-209ENST00000448940 EDC4Q6P2E9 1401 aaKnown RBP6.83□□□□□ -1.32
CDC42BPA-209ENST00000448940 DCTN1Q14203 1278 aa6.83□□□□□ -1.32
CDC42BPA-209ENST00000448940 CC2D2BQ6DHV5 1058 aa6.83□□□□□ -1.32
CDC42BPA-209ENST00000448940 NKTRP30414 1462 aaKnown RBP6.82□□□□□ -1.32
CDC42BPA-209ENST00000448940 DIP2CQ9Y2E4 1556 aa6.82□□□□□ -1.32
CDC42BPA-209ENST00000448940 POLR3DP05423 398 aaPredicted RBP6.82□□□□□ -1.32
CDC42BPA-209ENST00000448940 RAET1EQ8TD07 263 aa6.82□□□□□ -1.32
CDC42BPA-209ENST00000448940 SPINK5Q9NQ38 1064 aaPredicted RBP6.82□□□□□ -1.32
CDC42BPA-209ENST00000448940 SLC5A4Q9NY91 659 aa6.82□□□□□ -1.32
CDC42BPA-209ENST00000448940 SOS2Q07890 1332 aaPredicted RBP6.82□□□□□ -1.32
CDC42BPA-209ENST00000448940 TRIM44Q96DX7 344 aaPredicted RBP6.82□□□□□ -1.32
CDC42BPA-209ENST00000448940 GLRX3O76003 335 aaKnown RBP6.82□□□□□ -1.32
CDC42BPA-209ENST00000448940 SLC5A1P13866 664 aa6.82□□□□□ -1.32
CDC42BPA-209ENST00000448940 SLC15A2Q16348 729 aa6.82□□□□□ -1.32
CDC42BPA-209ENST00000448940 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.82□□□□□ -1.322e-6■■■■□ 23.8
CDC42BPA-209ENST00000448940 PRKRIP1Q9H875 184 aaPredicted RBP6.82□□□□□ -1.32
CDC42BPA-209ENST00000448940 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.82□□□□□ -1.325e-7■■■■□ 26.6
CDC42BPA-209ENST00000448940 OVOS2A0A0G2JMS6 1433 aa6.82□□□□□ -1.32
CDC42BPA-209ENST00000448940 OVOS2A0A0J9YW53 1432 aa6.82□□□□□ -1.32
CDC42BPA-209ENST00000448940 OVOS2Q6IE36 1432 aa6.82□□□□□ -1.32
CDC42BPA-209ENST00000448940 LDHAL6AQ6ZMR3 332 aa6.82□□□□□ -1.32
CDC42BPA-209ENST00000448940 ZNF804AQ7Z570 1209 aa6.82□□□□□ -1.32
CDC42BPA-209ENST00000448940 RNMTO43148 476 aaKnown RBP6.81□□□□□ -1.32
CDC42BPA-209ENST00000448940 PRDM5Q9NQX1 630 aaPredicted RBP6.81□□□□□ -1.32
CDC42BPA-209ENST00000448940 DNMT1P26358 1616 aaKnown RBP6.81□□□□□ -1.32
CDC42BPA-209ENST00000448940 ERBB3P21860 1342 aa6.81□□□□□ -1.32
CDC42BPA-209ENST00000448940 CCER2I3L3R5 266 aa6.81□□□□□ -1.32
CDC42BPA-209ENST00000448940 HTATSF1O43719 755 aaKnown RBP6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms