RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 NCBP3Q53F19 620 aaKnown RBP22.44■■□□□ 1.18
LIME1-202ENST00000444951 GRIN3BO60391 1043 aa22.43■■□□□ 1.18
LIME1-202ENST00000444951 CALD1Q05682 793 aaKnown RBP22.43■■□□□ 1.18
LIME1-202ENST00000444951 TAF7Q15545 349 aaPredicted RBP22.42■■□□□ 1.18
LIME1-202ENST00000444951 BTBD11A6QL63 1104 aa22.41■■□□□ 1.18
LIME1-202ENST00000444951 WDR63Q8IWG1 891 aa22.41■■□□□ 1.18
LIME1-202ENST00000444951 MRC1P22897 1456 aa22.41■■□□□ 1.18
LIME1-202ENST00000444951 C4AP0C0L4 1744 aa22.4■■□□□ 1.18
LIME1-202ENST00000444951 KIAA1551Q9HCM1 1747 aa22.4■■□□□ 1.18
LIME1-202ENST00000444951 ZBED9Q6R2W3 1325 aa22.4■■□□□ 1.18
LIME1-202ENST00000444951 ZNF521Q96K83 1311 aa22.4■■□□□ 1.18
LIME1-202ENST00000444951 C1QTNF8P60827 252 aa22.4■■□□□ 1.18
LIME1-202ENST00000444951 SLC39A6Q13433 755 aa22.4■■□□□ 1.18
LIME1-202ENST00000444951 TJP1Q07157 1748 aa22.4■■□□□ 1.18
LIME1-202ENST00000444951 CNTNAP4Q9C0A0 1308 aa22.39■■□□□ 1.18
LIME1-202ENST00000444951 PTCD1O75127 700 aaKnown RBP22.39■■□□□ 1.17
LIME1-202ENST00000444951 MMP10P09238 476 aa22.39■■□□□ 1.17
LIME1-202ENST00000444951 GOLGA2Q08379 1002 aa22.39■■□□□ 1.17
LIME1-202ENST00000444951 ARHGEF1Q92888 912 aaKnown RBP22.39■■□□□ 1.17
LIME1-202ENST00000444951 TSPYL4Q9UJ04 414 aa22.39■■□□□ 1.17
LIME1-202ENST00000444951 RTCBQ9Y3I0 505 aaKnown RBP22.39■■□□□ 1.17
LIME1-202ENST00000444951 SIPA1L3O60292 1781 aaPredicted RBP22.39■■□□□ 1.17
LIME1-202ENST00000444951 CICQ96RK0 1608 aaPredicted RBP22.39■■□□□ 1.17
LIME1-202ENST00000444951 KIF13BQ9NQT8 1826 aa22.38■■□□□ 1.17
LIME1-202ENST00000444951 GNAI1P63096 354 aa22.38■■□□□ 1.17
LIME1-202ENST00000444951 CDCA7LQ96GN5 454 aa22.38■■□□□ 1.17
LIME1-202ENST00000444951 SPINK5Q9NQ38 1064 aaPredicted RBP22.38■■□□□ 1.17
LIME1-202ENST00000444951 KCNQ3O43525 872 aa22.37■■□□□ 1.17
LIME1-202ENST00000444951 TRAPPC3LQ5T215 181 aa22.37■■□□□ 1.17
LIME1-202ENST00000444951 RC3H1Q5TC82 1133 aaKnown RBP22.37■■□□□ 1.17
LIME1-202ENST00000444951 TSR2Q969E8 191 aaKnown RBP22.37■■□□□ 1.17
LIME1-202ENST00000444951 IFT57Q9NWB7 429 aa22.37■■□□□ 1.17
LIME1-202ENST00000444951 RPS6KA4O75676 772 aa22.36■■□□□ 1.17
LIME1-202ENST00000444951 CFAP44Q96MT7 982 aa22.36■■□□□ 1.17
LIME1-202ENST00000444951 ATP10DQ9P241 1426 aa22.36■■□□□ 1.17
LIME1-202ENST00000444951 N4BP2Q86UW6 1770 aaPredicted RBP22.35■■□□□ 1.17
LIME1-202ENST00000444951 PXDNLA1KZ92 1463 aa22.35■■□□□ 1.17
LIME1-202ENST00000444951 IL16Q14005 1332 aa22.35■■□□□ 1.17
LIME1-202ENST00000444951 GYS1P13807 737 aa22.35■■□□□ 1.17
LIME1-202ENST00000444951 TTC5Q8N0Z6 440 aa22.35■■□□□ 1.17
LIME1-202ENST00000444951 MBIPQ9NS73 344 aa22.35■■□□□ 1.17
LIME1-202ENST00000444951 ADCY9O60503 1353 aa22.35■■□□□ 1.17
LIME1-202ENST00000444951 CHL1O00533 1208 aa22.34■■□□□ 1.17
LIME1-202ENST00000444951 GIGYF1O75420 1035 aaPredicted RBP22.34■■□□□ 1.17
LIME1-202ENST00000444951 ZNF853P0CG23 659 aa22.33■■□□□ 1.17
LIME1-202ENST00000444951 CRKLP46109 303 aaKnown RBP22.33■■□□□ 1.17
LIME1-202ENST00000444951 ZNF790Q6PG37 636 aa22.33■■□□□ 1.17
LIME1-202ENST00000444951 MYH16Q9H6N6 1097 aa22.33■■□□□ 1.17
LIME1-202ENST00000444951 C10orf71Q711Q0 1435 aa22.32■■□□□ 1.16
LIME1-202ENST00000444951 E9PSI1 815 aa22.32■■□□□ 1.16
LIME1-202ENST00000444951 ADRA2BP18089 450 aa22.32■■□□□ 1.16
LIME1-202ENST00000444951 SLFN5Q08AF3 891 aa22.32■■□□□ 1.16
LIME1-202ENST00000444951 SRP68Q9UHB9 627 aaKnown RBP22.32■■□□□ 1.16
LIME1-202ENST00000444951 FANCIQ9NVI1 1328 aa22.31■■□□□ 1.16
LIME1-202ENST00000444951 NLGN1Q8N2Q7 840 aa22.31■■□□□ 1.16
LIME1-202ENST00000444951 KDM3BQ7LBC6 1761 aa22.3■■□□□ 1.16
LIME1-202ENST00000444951 RFC4P35249 363 aa22.3■■□□□ 1.16
LIME1-202ENST00000444951 BABAM1Q9NWV8 329 aa22.3■■□□□ 1.16
LIME1-202ENST00000444951 INTS5Q6P9B9 1019 aaKnown RBP22.29■■□□□ 1.16
LIME1-202ENST00000444951 ZNF496Q96IT1 587 aaPredicted RBP22.29■■□□□ 1.16
LIME1-202ENST00000444951 KCPQ6ZWJ8 1503 aa22.28■■□□□ 1.16
LIME1-202ENST00000444951 A0A0G2JLW4 131 aa22.28■■□□□ 1.16
LIME1-202ENST00000444951 KRT24Q2M2I5 525 aa22.28■■□□□ 1.16
LIME1-202ENST00000444951 DNAJC10Q8IXB1 793 aa22.28■■□□□ 1.16
LIME1-202ENST00000444951 ELL2O00472 640 aaPredicted RBP22.27■■□□□ 1.16
LIME1-202ENST00000444951 BRCA1P38398 1863 aaKnown RBP22.27■■□□□ 1.16
LIME1-202ENST00000444951 EIF4A1P60842 406 aaKnown RBP22.27■■□□□ 1.16
LIME1-202ENST00000444951 FMNL2Q96PY5 1086 aa22.27■■□□□ 1.16
LIME1-202ENST00000444951 CEP350Q5VT06 3117 aa22.27■■□□□ 1.16
LIME1-202ENST00000444951 EXOSC9Q06265 439 aaKnown RBP22.26■■□□□ 1.15
LIME1-202ENST00000444951 FKBP8Q14318 412 aa22.26■■□□□ 1.15
LIME1-202ENST00000444951 ZNF526Q8TF50 670 aaPredicted RBP22.26■■□□□ 1.15
LIME1-202ENST00000444951 USP42Q9H9J4 1324 aaKnown RBP22.26■■□□□ 1.15
LIME1-202ENST00000444951 DPEP1P16444 411 aa22.25■■□□□ 1.15
LIME1-202ENST00000444951 DDR1Q08345 913 aa22.25■■□□□ 1.15
LIME1-202ENST00000444951 TGFB2P61812 414 aa22.24■■□□□ 1.15
LIME1-202ENST00000444951 DUSP27Q5VZP5 1158 aa22.24■■□□□ 1.15
LIME1-202ENST00000444951 C8orf58Q8NAV2 365 aa22.24■■□□□ 1.15
LIME1-202ENST00000444951 CCDC87Q9NVE4 849 aa22.24■■□□□ 1.15
LIME1-202ENST00000444951 PARP3Q9Y6F1 533 aa22.24■■□□□ 1.15
LIME1-202ENST00000444951 UBR2Q8IWV8 1755 aa22.24■■□□□ 1.15
LIME1-202ENST00000444951 PRAMEF22A3QJZ6 481 aa22.23■■□□□ 1.15
LIME1-202ENST00000444951 TRMT2AQ8IZ69 625 aaKnown RBP22.23■■□□□ 1.15
LIME1-202ENST00000444951 BCS1LQ9Y276 419 aa22.23■■□□□ 1.15
LIME1-202ENST00000444951 HEG1Q9ULI3 1381 aa22.23■■□□□ 1.15
LIME1-202ENST00000444951 CYP19A1P11511 503 aaPredicted RBP22.22■■□□□ 1.15
LIME1-202ENST00000444951 TSPYL6Q8N831 410 aa22.22■■□□□ 1.15
LIME1-202ENST00000444951 GPBP1L1Q9HC44 474 aaPredicted RBP22.22■■□□□ 1.15
LIME1-202ENST00000444951 SOS1Q07889 1333 aaPredicted RBP22.22■■□□□ 1.15
LIME1-202ENST00000444951 KCNA3P22001 575 aa22.21■■□□□ 1.15
LIME1-202ENST00000444951 NECTIN2Q92692 538 aa22.21■■□□□ 1.15
LIME1-202ENST00000444951 SNRPA1P09661 255 aaKnown RBP22.2■■□□□ 1.14
LIME1-202ENST00000444951 ZBTB1Q9Y2K1 713 aa22.2■■□□□ 1.14
LIME1-202ENST00000444951 EIF2S2P20042 333 aaKnown RBP22.19■■□□□ 1.14
LIME1-202ENST00000444951 TWISTNBQ3B726 338 aaPredicted RBP22.19■■□□□ 1.14
LIME1-202ENST00000444951 POLRMTO00411 1230 aaKnown RBP22.18■■□□□ 1.14
LIME1-202ENST00000444951 USPL1Q5W0Q7 1092 aa22.18■■□□□ 1.14
LIME1-202ENST00000444951 ARFGEF1Q9Y6D6 1849 aa22.17■■□□□ 1.14
LIME1-202ENST00000444951 TM4SF1P30408 202 aa22.17■■□□□ 1.14
LIME1-202ENST00000444951 VSIG10Q8N0Z9 540 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms