RNA–Protein interactions for RNA: ENST00000435455.5

SMPD4-207, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 5

Gene SMPD4, Length 842 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-207ENST00000435455 SOS1Q07889 1333 aaPredicted RBP21.4■■□□□ 1.02
SMPD4-207ENST00000435455 NLGN1Q8N2Q7 840 aa21.4■■□□□ 1.02
SMPD4-207ENST00000435455 KDM3BQ7LBC6 1761 aa21.4■■□□□ 1.02
SMPD4-207ENST00000435455 DCAF8L1A6NGE4 600 aa21.39■■□□□ 1.01
SMPD4-207ENST00000435455 ZBTB1Q9Y2K1 713 aa21.39■■□□□ 1.01
SMPD4-207ENST00000435455 KLHL34Q8N239 644 aa21.38■■□□□ 1.01
SMPD4-207ENST00000435455 THUMPD2Q9BTF0 503 aaKnown RBP21.38■■□□□ 1.01
SMPD4-207ENST00000435455 COL15A1P39059 1388 aa21.37■■□□□ 1.01
SMPD4-207ENST00000435455 USP42Q9H9J4 1324 aaKnown RBP21.37■■□□□ 1.01
SMPD4-207ENST00000435455 SNRPA1P09661 255 aaKnown RBP21.37■■□□□ 1.01
SMPD4-207ENST00000435455 GYS1P13807 737 aa21.37■■□□□ 1.01
SMPD4-207ENST00000435455 ZPR1O75312 459 aa21.36■■□□□ 1.01
SMPD4-207ENST00000435455 CANXP27824 592 aaKnown RBP21.36■■□□□ 1.01
SMPD4-207ENST00000435455 MIS18AQ9NYP9 233 aa21.36■■□□□ 1.01
SMPD4-207ENST00000435455 MMP10P09238 476 aa21.35■■□□□ 1.01
SMPD4-207ENST00000435455 NEUROD2Q15784 382 aa21.35■■□□□ 1.01
SMPD4-207ENST00000435455 SRP68Q9UHB9 627 aaKnown RBP21.35■■□□□ 1.01
SMPD4-207ENST00000435455 RRP7AQ9Y3A4 280 aaKnown RBP21.35■■□□□ 1.01
SMPD4-207ENST00000435455 A0A087WZG4 1122 aa21.34■■□□□ 1.01
SMPD4-207ENST00000435455 BABAM1Q9NWV8 329 aa21.34■■□□□ 1.01
SMPD4-207ENST00000435455 CD2APQ9Y5K6 639 aa21.34■■□□□ 1.01
SMPD4-207ENST00000435455 EIF5P55010 431 aaKnown RBP21.33■■□□□ 1.01
SMPD4-207ENST00000435455 CCDC184Q52MB2 194 aa21.33■■□□□ 1.01
SMPD4-207ENST00000435455 NPM2Q86SE8 214 aaKnown RBP21.33■■□□□ 1.01
SMPD4-207ENST00000435455 NARFQ9UHQ1 456 aa21.33■■□□□ 1.01
SMPD4-207ENST00000435455 USP16Q9Y5T5 823 aa21.33■■□□□ 1.01
SMPD4-207ENST00000435455 LAMB4A4D0S4 1761 aa21.33■■□□□ 1
SMPD4-207ENST00000435455 A1BGP04217 495 aa21.32■■□□□ 1
SMPD4-207ENST00000435455 IL6STP40189 918 aaPredicted RBP21.32■■□□□ 1
SMPD4-207ENST00000435455 MRS2Q9HD23 443 aa21.32■■□□□ 1
SMPD4-207ENST00000435455 EIF4A1P60842 406 aaKnown RBP21.31■■□□□ 1
SMPD4-207ENST00000435455 TSPYL4Q9UJ04 414 aa21.31■■□□□ 1
SMPD4-207ENST00000435455 TRIM35Q9UPQ4 493 aa21.31■■□□□ 1
SMPD4-207ENST00000435455 PARP3Q9Y6F1 533 aa21.31■■□□□ 1
SMPD4-207ENST00000435455 PRAMEF22A3QJZ6 481 aa21.3■■□□□ 1
SMPD4-207ENST00000435455 FKBP8Q14318 412 aa21.3■■□□□ 1
SMPD4-207ENST00000435455 USPL1Q5W0Q7 1092 aa21.3■■□□□ 1
SMPD4-207ENST00000435455 NLGN2Q8NFZ4 835 aa21.3■■□□□ 1
SMPD4-207ENST00000435455 APAF1O14727 1248 aa21.29■■□□□ 1
SMPD4-207ENST00000435455 KIF13BQ9NQT8 1826 aa21.28■■□□□ 1
SMPD4-207ENST00000435455 GIGYF1O75420 1035 aaPredicted RBP21.28■■□□□ 1
SMPD4-207ENST00000435455 ZNF330Q9Y3S2 320 aaPredicted RBP21.28■■□□□ 1
SMPD4-207ENST00000435455 SCN7AQ01118 1682 aa21.27■■□□□ 1
SMPD4-207ENST00000435455 TM4SF1P30408 202 aa21.26■□□□□ 0.99
SMPD4-207ENST00000435455 CHL1O00533 1208 aa21.25■□□□□ 0.99
SMPD4-207ENST00000435455 C10orf71Q711Q0 1435 aa21.24■□□□□ 0.99
SMPD4-207ENST00000435455 CALD1Q05682 793 aaKnown RBP21.24■□□□□ 0.99
SMPD4-207ENST00000435455 GPR162Q16538 588 aa21.24■□□□□ 0.99
SMPD4-207ENST00000435455 BCL2L12Q9HB09 334 aa21.24■□□□□ 0.99
SMPD4-207ENST00000435455 TBC1D2BQ9UPU7 963 aa21.24■□□□□ 0.99
SMPD4-207ENST00000435455 BCORQ6W2J9 1755 aa21.23■□□□□ 0.99
SMPD4-207ENST00000435455 POLRMTO00411 1230 aaKnown RBP21.23■□□□□ 0.99
SMPD4-207ENST00000435455 PIP4K2AP48426 406 aaPredicted RBP21.23■□□□□ 0.99
SMPD4-207ENST00000435455 DDR1Q08345 913 aa21.23■□□□□ 0.99
SMPD4-207ENST00000435455 DZIP3Q86Y13 1208 aaKnown RBP21.23■□□□□ 0.99
SMPD4-207ENST00000435455 LAS1LQ9Y4W2 734 aaKnown RBP21.23■□□□□ 0.99
SMPD4-207ENST00000435455 NBPF26B4DH59 902 aa21.22■□□□□ 0.99
SMPD4-207ENST00000435455 NFIXQ14938 502 aa21.22■□□□□ 0.99
SMPD4-207ENST00000435455 NBPF10Q6P3W6 841 aaKnown RBP21.22■□□□□ 0.99
SMPD4-207ENST00000435455 NBPF15Q8N660 670 aa21.22■□□□□ 0.99
SMPD4-207ENST00000435455 AFDNP55196 1824 aaKnown RBP21.21■□□□□ 0.99
SMPD4-207ENST00000435455 CAMTA2O94983 1202 aa21.21■□□□□ 0.99
SMPD4-207ENST00000435455 TGFB2P61812 414 aa21.21■□□□□ 0.99
SMPD4-207ENST00000435455 PELP1Q8IZL8 1130 aaKnown RBP21.21■□□□□ 0.99
SMPD4-207ENST00000435455 CFAP44Q96MT7 982 aa21.21■□□□□ 0.99
SMPD4-207ENST00000435455 ERBB4Q15303 1308 aa21.21■□□□□ 0.99
SMPD4-207ENST00000435455 NRXN2Q9P2S2 1712 aa21.2■□□□□ 0.98
SMPD4-207ENST00000435455 GOLGB1Q14789 3259 aaKnown RBP21.19■□□□□ 0.98
SMPD4-207ENST00000435455 CHD4Q14839 1912 aa21.19■□□□□ 0.98
SMPD4-207ENST00000435455 KIAA1551Q9HCM1 1747 aa21.18■□□□□ 0.98
SMPD4-207ENST00000435455 RGL2O15211 777 aa21.18■□□□□ 0.98
SMPD4-207ENST00000435455 GNAI1P63096 354 aa21.18■□□□□ 0.98
SMPD4-207ENST00000435455 CLEC4GQ6UXB4 293 aa21.18■□□□□ 0.98
SMPD4-207ENST00000435455 IFT57Q9NWB7 429 aa21.18■□□□□ 0.98
SMPD4-207ENST00000435455 ZNF652Q9Y2D9 606 aa21.18■□□□□ 0.98
SMPD4-207ENST00000435455 PXDNLA1KZ92 1463 aa21.18■□□□□ 0.98
SMPD4-207ENST00000435455 N4BP2Q86UW6 1770 aaPredicted RBP21.18■□□□□ 0.98
SMPD4-207ENST00000435455 SERPINB2P05120 415 aa21.17■□□□□ 0.98
SMPD4-207ENST00000435455 ZNF853P0CG23 659 aa21.17■□□□□ 0.98
SMPD4-207ENST00000435455 CCDC27Q2M243 656 aa21.17■□□□□ 0.98
SMPD4-207ENST00000435455 NCBP3Q53F19 620 aaKnown RBP21.17■□□□□ 0.98
SMPD4-207ENST00000435455 TBC1D9BQ66K14 1250 aa21.17■□□□□ 0.98
SMPD4-207ENST00000435455 CARMIL3Q8ND23 1372 aa21.16■□□□□ 0.98
SMPD4-207ENST00000435455 GRIN3BO60391 1043 aa21.16■□□□□ 0.98
SMPD4-207ENST00000435455 BICDL1Q6ZP65 573 aa21.16■□□□□ 0.98
SMPD4-207ENST00000435455 HOXB7P09629 217 aa21.15■□□□□ 0.98
SMPD4-207ENST00000435455 MYL6BP14649 208 aa21.15■□□□□ 0.98
SMPD4-207ENST00000435455 YBX3P16989 372 aaKnown RBP eCLIP21.15■□□□□ 0.984e-12■■□□□ 11.6
SMPD4-207ENST00000435455 EIF2S2P20042 333 aaKnown RBP21.15■□□□□ 0.98
SMPD4-207ENST00000435455 SETDB2Q96T68 719 aa21.15■□□□□ 0.98
SMPD4-207ENST00000435455 UTRNP46939 3433 aa21.15■□□□□ 0.98
SMPD4-207ENST00000435455 FAM9BQ8IZU0 186 aa21.14■□□□□ 0.97
SMPD4-207ENST00000435455 MBIPQ9NS73 344 aa21.14■□□□□ 0.97
SMPD4-207ENST00000435455 A0A0G2JLW4 131 aa21.13■□□□□ 0.97
SMPD4-207ENST00000435455 ERVV-1B6SEH8 477 aa21.13■□□□□ 0.97
SMPD4-207ENST00000435455 KIF6Q6ZMV9 814 aa21.13■□□□□ 0.97
SMPD4-207ENST00000435455 NGEFQ8N5V2 710 aa21.13■□□□□ 0.97
SMPD4-207ENST00000435455 BRCA1P38398 1863 aaKnown RBP21.12■□□□□ 0.97
SMPD4-207ENST00000435455 DPEP1P16444 411 aa21.12■□□□□ 0.97
SMPD4-207ENST00000435455 YY1P25490 414 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms