RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 PTPRCP08575 1304 aa8.8□□□□□ -1
COL28A1-202ENST00000430711 IFFO2Q5TF58 517 aa8.8□□□□□ -1
COL28A1-202ENST00000430711 PPP1R9BQ96SB3 815 aa8.8□□□□□ -1
COL28A1-202ENST00000430711 USP44Q9H0E7 712 aa8.8□□□□□ -1
COL28A1-202ENST00000430711 KDRP35968 1356 aa8.79□□□□□ -1
COL28A1-202ENST00000430711 IGSF1Q8N6C5 1336 aa8.79□□□□□ -1
COL28A1-202ENST00000430711 PLEKHG3A1L390 1219 aa8.79□□□□□ -1
COL28A1-202ENST00000430711 CHMLP26374 656 aa8.79□□□□□ -1
COL28A1-202ENST00000430711 UBE2Q2Q8WVN8 375 aa8.79□□□□□ -1
COL28A1-202ENST00000430711 ANO2Q9NQ90 1003 aa8.79□□□□□ -1
COL28A1-202ENST00000430711 STRCP1A6NGW2 1772 aa8.79□□□□□ -1
COL28A1-202ENST00000430711 SOS1Q07889 1333 aaPredicted RBP8.79□□□□□ -1
COL28A1-202ENST00000430711 LARGE1O95461 756 aa8.79□□□□□ -1
COL28A1-202ENST00000430711 NBPF7P0C2Y1 421 aaPredicted RBP8.79□□□□□ -1
COL28A1-202ENST00000430711 MX1P20591 662 aa8.79□□□□□ -1
COL28A1-202ENST00000430711 ZNF445P59923 1031 aa8.79□□□□□ -1
COL28A1-202ENST00000430711 XPCQ01831 940 aaPredicted RBP8.79□□□□□ -1
COL28A1-202ENST00000430711 ARHGEF10O15013 1369 aa8.78□□□□□ -1
COL28A1-202ENST00000430711 IBTKQ9P2D0 1353 aaPredicted RBP8.78□□□□□ -1
COL28A1-202ENST00000430711 PRAMEF22A3QJZ6 481 aa8.78□□□□□ -1
COL28A1-202ENST00000430711 SPDYE4A6NLX3 237 aa8.78□□□□□ -1
COL28A1-202ENST00000430711 TRIM6-TRIM34B2RNG4 842 aa8.78□□□□□ -1
COL28A1-202ENST00000430711 RASEFQ8IZ41 740 aa8.78□□□□□ -1
COL28A1-202ENST00000430711 LGR6Q9HBX8 967 aa8.78□□□□□ -1
COL28A1-202ENST00000430711 DIP2AQ14689 1571 aa8.78□□□□□ -1
COL28A1-202ENST00000430711 GNAI2P04899 355 aa8.77□□□□□ -1
COL28A1-202ENST00000430711 SKOR2Q2VWA4 1001 aaPredicted RBP8.77□□□□□ -1
COL28A1-202ENST00000430711 OSBPL3Q9H4L5 887 aa8.77□□□□□ -1
COL28A1-202ENST00000430711 AMOTL2Q9Y2J4 779 aa8.77□□□□□ -1
COL28A1-202ENST00000430711 AMPHP49418 695 aa8.77□□□□□ -1.01
COL28A1-202ENST00000430711 TRIM44Q96DX7 344 aaPredicted RBP8.77□□□□□ -1.01
COL28A1-202ENST00000430711 CHMP4BQ9H444 224 aaKnown RBP8.77□□□□□ -1.01
COL28A1-202ENST00000430711 SBNO1A3KN83 1393 aa8.77□□□□□ -1.01
COL28A1-202ENST00000430711 FLT4P35916 1363 aa8.77□□□□□ -1.01
COL28A1-202ENST00000430711 RPAP1Q9BWH6 1393 aaPredicted RBP8.77□□□□□ -1.01
COL28A1-202ENST00000430711 EIF2S2P20042 333 aaKnown RBP8.76□□□□□ -1.01
COL28A1-202ENST00000430711 HOXC9P31274 260 aa8.76□□□□□ -1.01
COL28A1-202ENST00000430711 KIAA1211Q6ZU35 1233 aa8.76□□□□□ -1.01
COL28A1-202ENST00000430711 LRRCC1Q9C099 1032 aa8.76□□□□□ -1.01
COL28A1-202ENST00000430711 ST18O60284 1047 aa8.76□□□□□ -1.01
COL28A1-202ENST00000430711 BRD1O95696 1058 aa8.76□□□□□ -1.01
COL28A1-202ENST00000430711 NLRP6P59044 892 aa8.76□□□□□ -1.01
COL28A1-202ENST00000430711 NUCB2P80303 420 aa8.76□□□□□ -1.01
COL28A1-202ENST00000430711 RBM10P98175 930 aaKnown RBP8.76□□□□□ -1.01
COL28A1-202ENST00000430711 PROSER3Q2NL68 480 aa8.76□□□□□ -1.01
COL28A1-202ENST00000430711 C17orf53Q8N3J3 647 aaPredicted RBP8.76□□□□□ -1.01
COL28A1-202ENST00000430711 NGDNQ8NEJ9 315 aaKnown RBP8.76□□□□□ -1.01
COL28A1-202ENST00000430711 PI4K2BQ8TCG2 481 aa8.76□□□□□ -1.01
COL28A1-202ENST00000430711 RTF1Q92541 710 aaKnown RBP8.76□□□□□ -1.01
COL28A1-202ENST00000430711 TAF6LQ9Y6J9 622 aa8.76□□□□□ -1.01
COL28A1-202ENST00000430711 N4BP2Q86UW6 1770 aaPredicted RBP8.75□□□□□ -1.01
COL28A1-202ENST00000430711 CCT4P50991 539 aaKnown RBP8.75□□□□□ -1.01
COL28A1-202ENST00000430711 ATP8B2P98198 1209 aa8.75□□□□□ -1.01
COL28A1-202ENST00000430711 CCDC173Q0VFZ6 552 aa8.75□□□□□ -1.01
COL28A1-202ENST00000430711 PPP1R42Q7Z4L9 355 aa8.75□□□□□ -1.01
COL28A1-202ENST00000430711 LRRC59Q96AG4 307 aaKnown RBP8.75□□□□□ -1.01
COL28A1-202ENST00000430711 PDLIM2Q96JY6 352 aa8.75□□□□□ -1.01
COL28A1-202ENST00000430711 SPG7Q9UQ90 795 aa8.75□□□□□ -1.01
COL28A1-202ENST00000430711 LRP5O75197 1615 aa8.75□□□□□ -1.01
COL28A1-202ENST00000430711 REC8O95072 547 aa8.75□□□□□ -1.01
COL28A1-202ENST00000430711 CHGBP05060 677 aa8.75□□□□□ -1.01
COL28A1-202ENST00000430711 ST3GAL1Q11201 340 aa8.75□□□□□ -1.01
COL28A1-202ENST00000430711 CUL4AQ13619 759 aa8.75□□□□□ -1.01
COL28A1-202ENST00000430711 ZSCAN30Q86W11 494 aa8.75□□□□□ -1.01
COL28A1-202ENST00000430711 SIRT1Q96EB6 747 aa8.75□□□□□ -1.01
COL28A1-202ENST00000430711 ZNF830Q96NB3 372 aaPredicted RBP8.75□□□□□ -1.01
COL28A1-202ENST00000430711 CHPF2Q9P2E5 772 aa8.75□□□□□ -1.01
COL28A1-202ENST00000430711 GOLGA6L22H0YM25 854 aa8.74□□□□□ -1.01
COL28A1-202ENST00000430711 ARID3AQ99856 593 aa8.74□□□□□ -1.01
COL28A1-202ENST00000430711 PA2G4Q9UQ80 394 aaKnown RBP8.74□□□□□ -1.01
COL28A1-202ENST00000430711 PXDNQ92626 1479 aa8.74□□□□□ -1.01
COL28A1-202ENST00000430711 LTN1O94822 1766 aa8.74□□□□□ -1.01
COL28A1-202ENST00000430711 PLEKHG1Q9ULL1 1385 aa8.74□□□□□ -1.01
COL28A1-202ENST00000430711 GNAT3A8MTJ3 354 aa8.74□□□□□ -1.01
COL28A1-202ENST00000430711 KCNA6P17658 529 aa8.74□□□□□ -1.01
COL28A1-202ENST00000430711 ADCK5Q3MIX3 580 aa8.74□□□□□ -1.01
COL28A1-202ENST00000430711 NBPF6Q5VWK0 638 aa8.74□□□□□ -1.01
COL28A1-202ENST00000430711 TSC1Q92574 1164 aa8.74□□□□□ -1.01
COL28A1-202ENST00000430711 NBPF4Q96M43 638 aa8.74□□□□□ -1.01
COL28A1-202ENST00000430711 ISY1Q9ULR0 285 aaKnown RBP8.74□□□□□ -1.01
COL28A1-202ENST00000430711 CNPY2Q9Y2B0 182 aa8.74□□□□□ -1.01
COL28A1-202ENST00000430711 XIRP1Q702N8 1843 aaKnown RBP8.74□□□□□ -1.01
COL28A1-202ENST00000430711 HMMRO75330 724 aa8.73□□□□□ -1.01
COL28A1-202ENST00000430711 PTH1RQ03431 593 aa8.73□□□□□ -1.01
COL28A1-202ENST00000430711 HDGFL1Q5TGJ6 251 aa8.73□□□□□ -1.01
COL28A1-202ENST00000430711 LRSAM1Q6UWE0 723 aa8.73□□□□□ -1.01
COL28A1-202ENST00000430711 RUFY3Q7L099 469 aa8.73□□□□□ -1.01
COL28A1-202ENST00000430711 USP48Q86UV5 1035 aa8.73□□□□□ -1.01
COL28A1-202ENST00000430711 STK31Q9BXU1 1019 aa8.73□□□□□ -1.01
COL28A1-202ENST00000430711 SRCIN1Q9C0H9 1055 aa8.73□□□□□ -1.01
COL28A1-202ENST00000430711 ADCY9O60503 1353 aa8.73□□□□□ -1.01
COL28A1-202ENST00000430711 MAP3K5Q99683 1374 aa8.73□□□□□ -1.01
COL28A1-202ENST00000430711 AP5Z1O43299 807 aa8.72□□□□□ -1.01
COL28A1-202ENST00000430711 SURF6O75683 361 aaKnown RBP8.72□□□□□ -1.01
COL28A1-202ENST00000430711 CASC1Q6TDU7 716 aa8.72□□□□□ -1.01
COL28A1-202ENST00000430711 CWC27Q6UX04 472 aaKnown RBP8.72□□□□□ -1.01
COL28A1-202ENST00000430711 C14orf37Q86TY3 774 aa8.72□□□□□ -1.01
COL28A1-202ENST00000430711 STAP2Q9UGK3 403 aa8.72□□□□□ -1.01
COL28A1-202ENST00000430711 R3HCC1Q9Y3T6 440 aaKnown RBP8.72□□□□□ -1.01
COL28A1-202ENST00000430711 SNX14Q9Y5W7 946 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms