RNA–Protein interactions for RNA: ENST00000430454.5

HDAC9-211, Transcript of histone deacetylase 9, humanhuman

TSL 4

Gene HDAC9, Length 545 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-211ENST00000430454 TJP1Q07157 1748 aa12.08□□□□□ -0.48
HDAC9-211ENST00000430454 GOLGB1Q14789 3259 aaKnown RBP12.08□□□□□ -0.48
HDAC9-211ENST00000430454 UTRNP46939 3433 aa12.07□□□□□ -0.48
HDAC9-211ENST00000430454 SNRPA1P09661 255 aaKnown RBP12.07□□□□□ -0.48
HDAC9-211ENST00000430454 C4AP0C0L4 1744 aa12.07□□□□□ -0.48
HDAC9-211ENST00000430454 IL6STP40189 918 aaPredicted RBP12.07□□□□□ -0.48
HDAC9-211ENST00000430454 C10orf71Q711Q0 1435 aa12.07□□□□□ -0.48
HDAC9-211ENST00000430454 ZNF496Q96IT1 587 aaPredicted RBP12.07□□□□□ -0.48
HDAC9-211ENST00000430454 PIM2Q9P1W9 311 aa12.07□□□□□ -0.48
HDAC9-211ENST00000430454 ZBTB1Q9Y2K1 713 aa12.07□□□□□ -0.48
HDAC9-211ENST00000430454 A0A0G2JLW4 131 aa12.06□□□□□ -0.48
HDAC9-211ENST00000430454 GIGYF1O75420 1035 aaPredicted RBP12.06□□□□□ -0.48
HDAC9-211ENST00000430454 TM4SF1P30408 202 aa12.06□□□□□ -0.48
HDAC9-211ENST00000430454 TAF7Q15545 349 aaPredicted RBP12.06□□□□□ -0.48
HDAC9-211ENST00000430454 DALRD3Q5D0E6 543 aaKnown RBP12.06□□□□□ -0.48
HDAC9-211ENST00000430454 PDZRN3Q9UPQ7 1066 aa12.06□□□□□ -0.48
HDAC9-211ENST00000430454 BCS1LQ9Y276 419 aa12.06□□□□□ -0.48
HDAC9-211ENST00000430454 MYH14Q7Z406 1995 aaKnown RBP12.05□□□□□ -0.48
HDAC9-211ENST00000430454 DPEP1P16444 411 aa12.05□□□□□ -0.48
HDAC9-211ENST00000430454 ZEB1P37275 1124 aaPredicted RBP12.05□□□□□ -0.48
HDAC9-211ENST00000430454 EIF5P55010 431 aaKnown RBP12.05□□□□□ -0.48
HDAC9-211ENST00000430454 MCM10Q7L590 875 aa12.05□□□□□ -0.48
HDAC9-211ENST00000430454 ZNF330Q9Y3S2 320 aaPredicted RBP12.05□□□□□ -0.48
HDAC9-211ENST00000430454 VIRMAQ69YN4 1812 aaKnown RBP12.04□□□□□ -0.48
HDAC9-211ENST00000430454 PXDNLA1KZ92 1463 aa12.04□□□□□ -0.48
HDAC9-211ENST00000430454 POLRMTO00411 1230 aaKnown RBP12.04□□□□□ -0.48
HDAC9-211ENST00000430454 NPHP1O15259 732 aa12.04□□□□□ -0.48
HDAC9-211ENST00000430454 LMOD3Q0VAK6 560 aa12.04□□□□□ -0.48
HDAC9-211ENST00000430454 DDX10Q13206 875 aaKnown RBP12.04□□□□□ -0.48
HDAC9-211ENST00000430454 NFE2L2Q16236 605 aa12.04□□□□□ -0.48
HDAC9-211ENST00000430454 ARHGAP27Q6ZUM4 889 aa12.04□□□□□ -0.48
HDAC9-211ENST00000430454 ZNF652Q9Y2D9 606 aa12.04□□□□□ -0.48
HDAC9-211ENST00000430454 UBR2Q8IWV8 1755 aa12.04□□□□□ -0.48
HDAC9-211ENST00000430454 SERPINB2P05120 415 aa12.03□□□□□ -0.48
HDAC9-211ENST00000430454 DDR1Q08345 913 aa12.03□□□□□ -0.48
HDAC9-211ENST00000430454 NFIXQ14938 502 aa12.03□□□□□ -0.48
HDAC9-211ENST00000430454 GPBP1L1Q9HC44 474 aaPredicted RBP12.03□□□□□ -0.48
HDAC9-211ENST00000430454 MYBBP1AQ9BQG0 1328 aaKnown RBP12.03□□□□□ -0.48
HDAC9-211ENST00000430454 KIF13BQ9NQT8 1826 aa12.02□□□□□ -0.48
HDAC9-211ENST00000430454 H0YIN7 160 aa12.02□□□□□ -0.49
HDAC9-211ENST00000430454 RGL2O15211 777 aa12.02□□□□□ -0.49
HDAC9-211ENST00000430454 WDR43Q15061 677 aaKnown RBP eCLIP12.02□□□□□ -0.49
HDAC9-211ENST00000430454 SETDB2Q96T68 719 aa12.02□□□□□ -0.49
HDAC9-211ENST00000430454 WWC3Q9ULE0 1092 aa12.02□□□□□ -0.49
HDAC9-211ENST00000430454 SIPA1L3O60292 1781 aaPredicted RBP12.01□□□□□ -0.49
HDAC9-211ENST00000430454 PDE6BP35913 854 aa12.01□□□□□ -0.49
HDAC9-211ENST00000430454 C1QTNF8P60827 252 aa12.01□□□□□ -0.49
HDAC9-211ENST00000430454 CLEC4GQ6UXB4 293 aa12.01□□□□□ -0.49
HDAC9-211ENST00000430454 DZIP3Q86Y13 1208 aaKnown RBP12.01□□□□□ -0.49
HDAC9-211ENST00000430454 TBC1D2BQ9UPU7 963 aa12.01□□□□□ -0.49
HDAC9-211ENST00000430454 CARMIL3Q8ND23 1372 aa12.01□□□□□ -0.49
HDAC9-211ENST00000430454 ATP10DQ9P241 1426 aa12.01□□□□□ -0.49
HDAC9-211ENST00000430454 A1BGP04217 495 aa12□□□□□ -0.49
HDAC9-211ENST00000430454 ST5P78524 1137 aa12□□□□□ -0.49
HDAC9-211ENST00000430454 DCTN1Q14203 1278 aa12□□□□□ -0.49
HDAC9-211ENST00000430454 BICDL1Q6ZP65 573 aa12□□□□□ -0.49
HDAC9-211ENST00000430454 PLEKHF1Q96S99 279 aa12□□□□□ -0.49
HDAC9-211ENST00000430454 BABAM1Q9NWV8 329 aa12□□□□□ -0.49
HDAC9-211ENST00000430454 KCNQ3O43525 872 aa11.99□□□□□ -0.49
HDAC9-211ENST00000430454 C2CD5Q86YS7 1000 aa11.99□□□□□ -0.49
HDAC9-211ENST00000430454 BRIP1Q9BX63 1249 aa11.99□□□□□ -0.49
HDAC9-211ENST00000430454 BCL2L12Q9HB09 334 aa11.99□□□□□ -0.49
HDAC9-211ENST00000430454 USP16Q9Y5T5 823 aa11.99□□□□□ -0.49
HDAC9-211ENST00000430454 KCNA3P22001 575 aa11.98□□□□□ -0.49
HDAC9-211ENST00000430454 CHRNA5P30532 468 aa11.98□□□□□ -0.49
HDAC9-211ENST00000430454 RIPK4P57078 832 aa11.98□□□□□ -0.49
HDAC9-211ENST00000430454 TBC1D9BQ66K14 1250 aa11.98□□□□□ -0.49
HDAC9-211ENST00000430454 TTLL6Q8N841 843 aa11.98□□□□□ -0.49
HDAC9-211ENST00000430454 CNBD1Q8NA66 436 aa11.98□□□□□ -0.49
HDAC9-211ENST00000430454 ADCY9O60503 1353 aa11.97□□□□□ -0.49
HDAC9-211ENST00000430454 CAMTA2O94983 1202 aa11.97□□□□□ -0.49
HDAC9-211ENST00000430454 KIF6Q6ZMV9 814 aa11.97□□□□□ -0.49
HDAC9-211ENST00000430454 NBPF5PQ86XG9 351 aaPredicted RBP11.97□□□□□ -0.49
HDAC9-211ENST00000430454 N4BP2Q86UW6 1770 aaPredicted RBP11.97□□□□□ -0.49
HDAC9-211ENST00000430454 ERBB4Q15303 1308 aa11.96□□□□□ -0.49
HDAC9-211ENST00000430454 SOGA3Q5TF21 947 aa11.96□□□□□ -0.49
HDAC9-211ENST00000430454 TPTE2Q6XPS3 522 aa11.96□□□□□ -0.49
HDAC9-211ENST00000430454 ZNF526Q8TF50 670 aaPredicted RBP11.96□□□□□ -0.49
HDAC9-211ENST00000430454 MIS18AQ9NYP9 233 aa11.96□□□□□ -0.49
HDAC9-211ENST00000430454 TSPYL4Q9UJ04 414 aa11.96□□□□□ -0.49
HDAC9-211ENST00000430454 KDM2BQ8NHM5 1336 aa11.95□□□□□ -0.5
HDAC9-211ENST00000430454 SENP3-EIF4A1A0A087X0R7 540 aa11.95□□□□□ -0.5
HDAC9-211ENST00000430454 GTF2E1P29083 439 aaPredicted RBP11.95□□□□□ -0.5
HDAC9-211ENST00000430454 TMPOP42166 694 aaKnown RBP11.95□□□□□ -0.5
HDAC9-211ENST00000430454 EIF4A1P60842 406 aaKnown RBP11.95□□□□□ -0.5
HDAC9-211ENST00000430454 C9orf131Q5VYM1 1079 aa11.95□□□□□ -0.5
HDAC9-211ENST00000430454 CNKSR1Q969H4 720 aa11.95□□□□□ -0.5
HDAC9-211ENST00000430454 ZNF622Q969S3 477 aaKnown RBP eCLIP11.95□□□□□ -0.5
HDAC9-211ENST00000430454 RUNDC1Q96C34 613 aa11.95□□□□□ -0.5
HDAC9-211ENST00000430454 KIAA1551Q9HCM1 1747 aa11.94□□□□□ -0.5
HDAC9-211ENST00000430454 ZC3H4Q9UPT8 1303 aaKnown RBP11.94□□□□□ -0.5
HDAC9-211ENST00000430454 ERVV-1B6SEH8 477 aa11.94□□□□□ -0.5
HDAC9-211ENST00000430454 PRR5LQ6MZQ0 368 aa11.94□□□□□ -0.5
HDAC9-211ENST00000430454 C16orf71Q8IYS4 520 aaPredicted RBP11.94□□□□□ -0.5
HDAC9-211ENST00000430454 NYXQ9GZU5 481 aa11.94□□□□□ -0.5
HDAC9-211ENST00000430454 RNF181Q9P0P0 153 aa11.94□□□□□ -0.5
HDAC9-211ENST00000430454 NIP7Q9Y221 180 aaKnown RBP eCLIP11.94□□□□□ -0.5
HDAC9-211ENST00000430454 SCN7AQ01118 1682 aa11.94□□□□□ -0.5
HDAC9-211ENST00000430454 PRAMEF22A3QJZ6 481 aa11.93□□□□□ -0.5
HDAC9-211ENST00000430454 LMNB1P20700 586 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms