RNA–Protein interactions for RNA: ENST00000430071.6

UBE3D-204, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 5

Gene UBE3D, Length 1,352 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-204ENST00000430071 ZNF784Q8NCA9 323 aaPredicted RBP22.57■■□□□ 1.2
UBE3D-204ENST00000430071 TTC5Q8N0Z6 440 aa22.56■■□□□ 1.2
UBE3D-204ENST00000430071 PXDNLA1KZ92 1463 aa22.56■■□□□ 1.2
UBE3D-204ENST00000430071 DDR1Q08345 913 aa22.55■■□□□ 1.2
UBE3D-204ENST00000430071 USPL1Q5W0Q7 1092 aa22.55■■□□□ 1.2
UBE3D-204ENST00000430071 VSIG10Q8N0Z9 540 aa22.55■■□□□ 1.2
UBE3D-204ENST00000430071 HEG1Q9ULI3 1381 aa22.54■■□□□ 1.2
UBE3D-204ENST00000430071 CANXP27824 592 aaKnown RBP22.54■■□□□ 1.2
UBE3D-204ENST00000430071 C10orf71Q711Q0 1435 aa22.54■■□□□ 1.2
UBE3D-204ENST00000430071 COL15A1P39059 1388 aa22.54■■□□□ 1.2
UBE3D-204ENST00000430071 MYBBP1AQ9BQG0 1328 aaKnown RBP22.53■■□□□ 1.2
UBE3D-204ENST00000430071 A0A0G2JLW4 131 aa22.52■■□□□ 1.2
UBE3D-204ENST00000430071 PRAMEF22A3QJZ6 481 aa22.52■■□□□ 1.2
UBE3D-204ENST00000430071 BTBD11A6QL63 1104 aa22.52■■□□□ 1.2
UBE3D-204ENST00000430071 PLEKHF1Q96S99 279 aa22.52■■□□□ 1.2
UBE3D-204ENST00000430071 BCL2L12Q9HB09 334 aa22.52■■□□□ 1.2
UBE3D-204ENST00000430071 TM4SF1P30408 202 aa22.51■■□□□ 1.19
UBE3D-204ENST00000430071 PARP3Q9Y6F1 533 aa22.51■■□□□ 1.19
UBE3D-204ENST00000430071 GRIN3BO60391 1043 aa22.5■■□□□ 1.19
UBE3D-204ENST00000430071 ANP32CO43423 234 aa22.5■■□□□ 1.19
UBE3D-204ENST00000430071 A1BGP04217 495 aa22.5■■□□□ 1.19
UBE3D-204ENST00000430071 NARFQ9UHQ1 456 aa22.5■■□□□ 1.19
UBE3D-204ENST00000430071 NRXN2Q9P2S2 1712 aa22.49■■□□□ 1.19
UBE3D-204ENST00000430071 KDM3BQ7LBC6 1761 aa22.49■■□□□ 1.19
UBE3D-204ENST00000430071 POLRMTO00411 1230 aaKnown RBP22.49■■□□□ 1.19
UBE3D-204ENST00000430071 ZPR1O75312 459 aa22.49■■□□□ 1.19
UBE3D-204ENST00000430071 DPEP1P16444 411 aa22.49■■□□□ 1.19
UBE3D-204ENST00000430071 PIP4K2AP48426 406 aaPredicted RBP22.49■■□□□ 1.19
UBE3D-204ENST00000430071 EIF5P55010 431 aaKnown RBP22.49■■□□□ 1.19
UBE3D-204ENST00000430071 RTF1Q92541 710 aaKnown RBP22.49■■□□□ 1.19
UBE3D-204ENST00000430071 FMNL2Q96PY5 1086 aa22.49■■□□□ 1.19
UBE3D-204ENST00000430071 MIS18AQ9NYP9 233 aa22.49■■□□□ 1.19
UBE3D-204ENST00000430071 USP16Q9Y5T5 823 aa22.49■■□□□ 1.19
UBE3D-204ENST00000430071 ARFGEF1Q9Y6D6 1849 aa22.49■■□□□ 1.19
UBE3D-204ENST00000430071 THUMPD2Q9BTF0 503 aaKnown RBP22.48■■□□□ 1.19
UBE3D-204ENST00000430071 SCN7AQ01118 1682 aa22.47■■□□□ 1.19
UBE3D-204ENST00000430071 STARD3NLO95772 234 aa22.47■■□□□ 1.19
UBE3D-204ENST00000430071 KCNA3P22001 575 aa22.47■■□□□ 1.19
UBE3D-204ENST00000430071 NFIXQ14938 502 aa22.47■■□□□ 1.19
UBE3D-204ENST00000430071 ANKRD31Q8N7Z5 1873 aa22.47■■□□□ 1.19
UBE3D-204ENST00000430071 BCORQ6W2J9 1755 aa22.46■■□□□ 1.19
UBE3D-204ENST00000430071 HTATSF1O43719 755 aaKnown RBP22.45■■□□□ 1.18
UBE3D-204ENST00000430071 TGFB2P61812 414 aa22.45■■□□□ 1.18
UBE3D-204ENST00000430071 TBC1D2BQ9UPU7 963 aa22.45■■□□□ 1.18
UBE3D-204ENST00000430071 ZNF330Q9Y3S2 320 aaPredicted RBP22.45■■□□□ 1.18
UBE3D-204ENST00000430071 LAMB4A4D0S4 1761 aa22.43■■□□□ 1.18
UBE3D-204ENST00000430071 CHRNA5P30532 468 aa22.43■■□□□ 1.18
UBE3D-204ENST00000430071 NFE2L2Q16236 605 aa22.43■■□□□ 1.18
UBE3D-204ENST00000430071 TEX13AQ9BXU3 409 aaPredicted RBP22.43■■□□□ 1.18
UBE3D-204ENST00000430071 BCS1LQ9Y276 419 aa22.43■■□□□ 1.18
UBE3D-204ENST00000430071 TAF7Q15545 349 aaPredicted RBP22.42■■□□□ 1.18
UBE3D-204ENST00000430071 BICDL1Q6ZP65 573 aa22.42■■□□□ 1.18
UBE3D-204ENST00000430071 DLEC1Q9Y238 1755 aa22.42■■□□□ 1.18
UBE3D-204ENST00000430071 SBF1O95248 1867 aa22.42■■□□□ 1.18
UBE3D-204ENST00000430071 DIEXFQ68CQ4 756 aaKnown RBP22.41■■□□□ 1.18
UBE3D-204ENST00000430071 CCDC88AQ3V6T2 1871 aa22.41■■□□□ 1.18
UBE3D-204ENST00000430071 CCDC184Q52MB2 194 aa22.4■■□□□ 1.18
UBE3D-204ENST00000430071 TBC1D9BQ66K14 1250 aa22.4■■□□□ 1.18
UBE3D-204ENST00000430071 CARMIL3Q8ND23 1372 aa22.4■■□□□ 1.18
UBE3D-204ENST00000430071 CACNA1SQ13698 1873 aa22.4■■□□□ 1.18
UBE3D-204ENST00000430071 SERPINB2P05120 415 aa22.39■■□□□ 1.18
UBE3D-204ENST00000430071 IL6STP40189 918 aaPredicted RBP22.39■■□□□ 1.18
UBE3D-204ENST00000430071 NBPF26B4DH59 902 aa22.38■■□□□ 1.17
UBE3D-204ENST00000430071 SNRPA1P09661 255 aaKnown RBP22.38■■□□□ 1.17
UBE3D-204ENST00000430071 NBPF10Q6P3W6 841 aaKnown RBP22.38■■□□□ 1.17
UBE3D-204ENST00000430071 NBPF15Q8N660 670 aa22.38■■□□□ 1.17
UBE3D-204ENST00000430071 NEFMP07197 916 aa22.38■■□□□ 1.17
UBE3D-204ENST00000430071 NUP98P52948 1817 aa22.37■■□□□ 1.17
UBE3D-204ENST00000430071 ATP10DQ9P241 1426 aa22.37■■□□□ 1.17
UBE3D-204ENST00000430071 A0A087WZG4 1122 aa22.37■■□□□ 1.17
UBE3D-204ENST00000430071 CAMTA2O94983 1202 aa22.37■■□□□ 1.17
UBE3D-204ENST00000430071 CCDC146Q8IYE0 955 aa22.37■■□□□ 1.17
UBE3D-204ENST00000430071 CCDC24Q8N4L8 307 aa22.37■■□□□ 1.17
UBE3D-204ENST00000430071 ADCY9O60503 1353 aa22.36■■□□□ 1.17
UBE3D-204ENST00000430071 COL11A2P13942 1736 aaPredicted RBP22.36■■□□□ 1.17
UBE3D-204ENST00000430071 MAPK8IP3Q9UPT6 1336 aa22.36■■□□□ 1.17
UBE3D-204ENST00000430071 RRP7AQ9Y3A4 280 aaKnown RBP22.36■■□□□ 1.17
UBE3D-204ENST00000430071 DZIP3Q86Y13 1208 aaKnown RBP22.35■■□□□ 1.17
UBE3D-204ENST00000430071 RIPK4P57078 832 aa22.34■■□□□ 1.17
UBE3D-204ENST00000430071 ARHGAP27Q6ZUM4 889 aa22.34■■□□□ 1.17
UBE3D-204ENST00000430071 PIM2Q9P1W9 311 aa22.34■■□□□ 1.17
UBE3D-204ENST00000430071 TMPOP42166 694 aaKnown RBP22.33■■□□□ 1.17
UBE3D-204ENST00000430071 EIF4A1P60842 406 aaKnown RBP22.33■■□□□ 1.17
UBE3D-204ENST00000430071 ZNF526Q8TF50 670 aaPredicted RBP22.32■■□□□ 1.16
UBE3D-204ENST00000430071 PNNQ9H307 717 aaKnown RBP22.32■■□□□ 1.16
UBE3D-204ENST00000430071 GIGYF1O75420 1035 aaPredicted RBP22.31■■□□□ 1.16
UBE3D-204ENST00000430071 ADAMTS8Q9UP79 889 aa22.31■■□□□ 1.16
UBE3D-204ENST00000430071 NEUROD2Q15784 382 aa22.3■■□□□ 1.16
UBE3D-204ENST00000430071 DALRD3Q5D0E6 543 aaKnown RBP22.3■■□□□ 1.16
UBE3D-204ENST00000430071 MRS2Q9HD23 443 aa22.3■■□□□ 1.16
UBE3D-204ENST00000430071 PRR5LQ6MZQ0 368 aa22.29■■□□□ 1.16
UBE3D-204ENST00000430071 SLX4Q8IY92 1834 aa22.29■■□□□ 1.16
UBE3D-204ENST00000430071 PNISRQ8TF01 805 aaKnown RBP22.28■■□□□ 1.16
UBE3D-204ENST00000430071 HLFQ16534 295 aa22.27■■□□□ 1.16
UBE3D-204ENST00000430071 C2CD5Q86YS7 1000 aa22.27■■□□□ 1.16
UBE3D-204ENST00000430071 NGEFQ8N5V2 710 aa22.27■■□□□ 1.16
UBE3D-204ENST00000430071 C1QTNF8P60827 252 aa22.26■■□□□ 1.15
UBE3D-204ENST00000430071 WDR43Q15061 677 aaKnown RBP eCLIP22.26■■□□□ 1.15
UBE3D-204ENST00000430071 NPM2Q86SE8 214 aaKnown RBP22.26■■□□□ 1.15
UBE3D-204ENST00000430071 MIER1Q8N108 512 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms