RNA–Protein interactions for RNA: ENST00000427943.1

PSPC1-202, Transcript of paraspeckle component 1, humanhuman

TSL 5

Gene PSPC1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-202ENST00000427943 HEG1Q9ULI3 1381 aa24.54■■□□□ 1.52
PSPC1-202ENST00000427943 SCN7AQ01118 1682 aa24.53■■□□□ 1.52
PSPC1-202ENST00000427943 USPL1Q5W0Q7 1092 aa24.53■■□□□ 1.52
PSPC1-202ENST00000427943 MCM10Q7L590 875 aa24.53■■□□□ 1.52
PSPC1-202ENST00000427943 CANXP27824 592 aaKnown RBP24.52■■□□□ 1.52
PSPC1-202ENST00000427943 BTBD11A6QL63 1104 aa24.51■■□□□ 1.51
PSPC1-202ENST00000427943 KCNQ3O43525 872 aa24.51■■□□□ 1.51
PSPC1-202ENST00000427943 ZPR1O75312 459 aa24.51■■□□□ 1.51
PSPC1-202ENST00000427943 DDR1Q08345 913 aa24.51■■□□□ 1.51
PSPC1-202ENST00000427943 DCTN1Q14203 1278 aa24.51■■□□□ 1.51
PSPC1-202ENST00000427943 RTF1Q92541 710 aaKnown RBP24.51■■□□□ 1.51
PSPC1-202ENST00000427943 DDX10Q13206 875 aaKnown RBP24.5■■□□□ 1.51
PSPC1-202ENST00000427943 NRXN2Q9P2S2 1712 aa24.49■■□□□ 1.51
PSPC1-202ENST00000427943 STARD3NLO95772 234 aa24.49■■□□□ 1.51
PSPC1-202ENST00000427943 FMNL2Q96PY5 1086 aa24.49■■□□□ 1.51
PSPC1-202ENST00000427943 A0A0G2JLW4 131 aa24.48■■□□□ 1.51
PSPC1-202ENST00000427943 NARFQ9UHQ1 456 aa24.48■■□□□ 1.51
PSPC1-202ENST00000427943 ARFGEF1Q9Y6D6 1849 aa24.48■■□□□ 1.51
PSPC1-202ENST00000427943 LAMB4A4D0S4 1761 aa24.47■■□□□ 1.51
PSPC1-202ENST00000427943 BCORQ6W2J9 1755 aa24.47■■□□□ 1.51
PSPC1-202ENST00000427943 KDM3BQ7LBC6 1761 aa24.47■■□□□ 1.51
PSPC1-202ENST00000427943 TGFB2P61812 414 aa24.47■■□□□ 1.51
PSPC1-202ENST00000427943 POLRMTO00411 1230 aaKnown RBP24.46■■□□□ 1.51
PSPC1-202ENST00000427943 NEFMP07197 916 aa24.45■■□□□ 1.5
PSPC1-202ENST00000427943 DPEP1P16444 411 aa24.45■■□□□ 1.5
PSPC1-202ENST00000427943 BCL2L12Q9HB09 334 aa24.45■■□□□ 1.5
PSPC1-202ENST00000427943 ZNF330Q9Y3S2 320 aaPredicted RBP24.45■■□□□ 1.5
PSPC1-202ENST00000427943 TM4SF1P30408 202 aa24.44■■□□□ 1.5
PSPC1-202ENST00000427943 EIF5P55010 431 aaKnown RBP24.44■■□□□ 1.5
PSPC1-202ENST00000427943 TEX13AQ9BXU3 409 aaPredicted RBP24.44■■□□□ 1.5
PSPC1-202ENST00000427943 DLEC1Q9Y238 1755 aa24.44■■□□□ 1.5
PSPC1-202ENST00000427943 HTATSF1O43719 755 aaKnown RBP24.43■■□□□ 1.5
PSPC1-202ENST00000427943 NFIXQ14938 502 aa24.43■■□□□ 1.5
PSPC1-202ENST00000427943 RALBP1Q15311 655 aa24.43■■□□□ 1.5
PSPC1-202ENST00000427943 PLEKHF1Q96S99 279 aa24.43■■□□□ 1.5
PSPC1-202ENST00000427943 BCS1LQ9Y276 419 aa24.43■■□□□ 1.5
PSPC1-202ENST00000427943 PRAMEF22A3QJZ6 481 aa24.42■■□□□ 1.5
PSPC1-202ENST00000427943 A1BGP04217 495 aa24.42■■□□□ 1.5
PSPC1-202ENST00000427943 ATP10DQ9P241 1426 aa24.41■■□□□ 1.5
PSPC1-202ENST00000427943 ANKRD31Q8N7Z5 1873 aa24.41■■□□□ 1.5
PSPC1-202ENST00000427943 A0A087WZG4 1122 aa24.4■■□□□ 1.5
PSPC1-202ENST00000427943 USP16Q9Y5T5 823 aa24.4■■□□□ 1.5
PSPC1-202ENST00000427943 MAPK8IP3Q9UPT6 1336 aa24.39■■□□□ 1.5
PSPC1-202ENST00000427943 IL6STP40189 918 aaPredicted RBP24.39■■□□□ 1.49
PSPC1-202ENST00000427943 PIP4K2AP48426 406 aaPredicted RBP24.39■■□□□ 1.49
PSPC1-202ENST00000427943 NFE2L2Q16236 605 aa24.39■■□□□ 1.49
PSPC1-202ENST00000427943 TBC1D2BQ9UPU7 963 aa24.39■■□□□ 1.49
PSPC1-202ENST00000427943 ADCY9O60503 1353 aa24.39■■□□□ 1.49
PSPC1-202ENST00000427943 MYBBP1AQ9BQG0 1328 aaKnown RBP24.38■■□□□ 1.49
PSPC1-202ENST00000427943 KCNA3P22001 575 aa24.38■■□□□ 1.49
PSPC1-202ENST00000427943 CHRNA5P30532 468 aa24.38■■□□□ 1.49
PSPC1-202ENST00000427943 BICDL1Q6ZP65 573 aa24.38■■□□□ 1.49
PSPC1-202ENST00000427943 MIS18AQ9NYP9 233 aa24.38■■□□□ 1.49
PSPC1-202ENST00000427943 TAF7Q15545 349 aaPredicted RBP24.37■■□□□ 1.49
PSPC1-202ENST00000427943 THUMPD2Q9BTF0 503 aaKnown RBP24.37■■□□□ 1.49
PSPC1-202ENST00000427943 SERPINB2P05120 415 aa24.36■■□□□ 1.49
PSPC1-202ENST00000427943 SNRPA1P09661 255 aaKnown RBP24.36■■□□□ 1.49
PSPC1-202ENST00000427943 CARMIL3Q8ND23 1372 aa24.36■■□□□ 1.49
PSPC1-202ENST00000427943 TBC1D9BQ66K14 1250 aa24.35■■□□□ 1.49
PSPC1-202ENST00000427943 PNNQ9H307 717 aaKnown RBP24.35■■□□□ 1.49
PSPC1-202ENST00000427943 COL11A2P13942 1736 aaPredicted RBP24.35■■□□□ 1.49
PSPC1-202ENST00000427943 NPM2Q86SE8 214 aaKnown RBP24.34■■□□□ 1.49
PSPC1-202ENST00000427943 PIM2Q9P1W9 311 aa24.34■■□□□ 1.49
PSPC1-202ENST00000427943 CACNA1SQ13698 1873 aa24.34■■□□□ 1.49
PSPC1-202ENST00000427943 GIGYF1O75420 1035 aaPredicted RBP24.33■■□□□ 1.49
PSPC1-202ENST00000427943 DZIP3Q86Y13 1208 aaKnown RBP24.33■■□□□ 1.49
PSPC1-202ENST00000427943 CAMTA2O94983 1202 aa24.32■■□□□ 1.48
PSPC1-202ENST00000427943 ARHGAP27Q6ZUM4 889 aa24.32■■□□□ 1.48
PSPC1-202ENST00000427943 ZNF526Q8TF50 670 aaPredicted RBP24.32■■□□□ 1.48
PSPC1-202ENST00000427943 SBF1O95248 1867 aa24.31■■□□□ 1.48
PSPC1-202ENST00000427943 DALRD3Q5D0E6 543 aaKnown RBP24.3■■□□□ 1.48
PSPC1-202ENST00000427943 PNISRQ8TF01 805 aaKnown RBP24.29■■□□□ 1.48
PSPC1-202ENST00000427943 NBPF26B4DH59 902 aa24.28■■□□□ 1.48
PSPC1-202ENST00000427943 C1QTNF8P60827 252 aa24.28■■□□□ 1.48
PSPC1-202ENST00000427943 NBPF10Q6P3W6 841 aaKnown RBP24.28■■□□□ 1.48
PSPC1-202ENST00000427943 CCDC24Q8N4L8 307 aa24.28■■□□□ 1.48
PSPC1-202ENST00000427943 NBPF15Q8N660 670 aa24.28■■□□□ 1.48
PSPC1-202ENST00000427943 NUP98P52948 1817 aa24.27■■□□□ 1.48
PSPC1-202ENST00000427943 CCDC146Q8IYE0 955 aa24.27■■□□□ 1.48
PSPC1-202ENST00000427943 GPBP1L1Q9HC44 474 aaPredicted RBP24.27■■□□□ 1.48
PSPC1-202ENST00000427943 CCDC88AQ3V6T2 1871 aa24.27■■□□□ 1.48
PSPC1-202ENST00000427943 RIPK4P57078 832 aa24.26■■□□□ 1.47
PSPC1-202ENST00000427943 C2CD5Q86YS7 1000 aa24.26■■□□□ 1.47
PSPC1-202ENST00000427943 TMPOP42166 694 aaKnown RBP24.25■■□□□ 1.47
PSPC1-202ENST00000427943 EIF4A1P60842 406 aaKnown RBP24.25■■□□□ 1.47
PSPC1-202ENST00000427943 PRR5LQ6MZQ0 368 aa24.25■■□□□ 1.47
PSPC1-202ENST00000427943 RRP7AQ9Y3A4 280 aaKnown RBP24.25■■□□□ 1.47
PSPC1-202ENST00000427943 WDR43Q15061 677 aaKnown RBP eCLIP24.24■■□□□ 1.47
PSPC1-202ENST00000427943 SETDB2Q96T68 719 aa24.24■■□□□ 1.47
PSPC1-202ENST00000427943 PRKRIP1Q9H875 184 aaPredicted RBP24.24■■□□□ 1.47
PSPC1-202ENST00000427943 ARFGEF2Q9Y6D5 1785 aa24.24■■□□□ 1.47
PSPC1-202ENST00000427943 H0YIN7 160 aa24.22■■□□□ 1.47
PSPC1-202ENST00000427943 NPHP1O15259 732 aa24.22■■□□□ 1.47
PSPC1-202ENST00000427943 CNBD1Q8NA66 436 aa24.22■■□□□ 1.47
PSPC1-202ENST00000427943 TSPYL4Q9UJ04 414 aa24.22■■□□□ 1.47
PSPC1-202ENST00000427943 NEUROD2Q15784 382 aa24.21■■□□□ 1.47
PSPC1-202ENST00000427943 NGEFQ8N5V2 710 aa24.21■■□□□ 1.47
PSPC1-202ENST00000427943 ZNF652Q9Y2D9 606 aa24.21■■□□□ 1.47
PSPC1-202ENST00000427943 TIAM2Q8IVF5 1701 aa24.21■■□□□ 1.47
PSPC1-202ENST00000427943 LMOD3Q0VAK6 560 aa24.2■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms